Wall clock time and date at job start Mon Mar 30 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47108 * 2 1 4 4 H 1.09001 * 109.49537 * 304.84850 * 3 2 1 5 5 C 1.53238 * 109.49626 * 64.93116 * 3 2 1 6 6 N 1.47079 * 108.52293 * 173.78653 * 5 3 2 7 7 C 1.34774 * 120.88007 * 128.79210 * 6 5 3 8 8 O 1.21443 * 120.00055 * 351.90447 * 7 6 5 9 9 C 1.48830 * 120.00013 * 171.90399 * 7 6 5 10 10 O 1.21496 * 119.99967 * 353.33598 * 9 7 6 11 11 N 1.34778 * 120.00131 * 173.34005 * 9 7 6 12 12 C 1.36116 * 120.00122 * 179.97438 * 11 9 7 13 13 H 1.07999 * 120.00159 * 359.97438 * 12 11 9 14 14 C 1.39589 * 119.99931 * 179.97438 * 12 11 9 15 15 N 1.31009 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99849 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46826 * 90.00186 * 16 14 12 18 18 H 1.48495 * 109.47011 * 210.00226 * 16 14 12 19 19 H 1.48494 * 109.47128 * 330.00318 * 16 14 12 20 20 C 1.47075 * 118.23979 * 308.81715 * 6 5 3 21 21 C 1.53245 * 108.52195 * 51.17924 * 20 6 5 22 22 N 1.46895 * 109.33905 * 306.17406 * 21 20 6 23 23 C 1.46905 * 110.99680 * 187.25119 * 22 21 20 24 24 H 1.09001 * 109.47381 * 302.16849 * 1 2 3 25 25 H 1.09009 * 109.46999 * 62.16513 * 1 2 3 26 26 H 1.09003 * 109.47514 * 182.16830 * 1 2 3 27 27 H 1.09004 * 109.46669 * 239.99849 * 2 1 3 28 28 H 1.09002 * 109.46527 * 120.00123 * 2 1 3 29 29 H 1.09004 * 109.62899 * 293.49950 * 5 3 2 30 30 H 1.08997 * 109.62786 * 54.07750 * 5 3 2 31 31 H 0.97003 * 119.99720 * 359.97438 * 11 9 7 32 32 H 0.96998 * 120.00536 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.62309 * 291.47614 * 20 6 5 34 34 H 1.09000 * 109.79055 * 170.98977 * 20 6 5 35 35 H 1.08994 * 109.49076 * 186.21036 * 21 20 6 36 36 H 1.08999 * 109.50874 * 66.14806 * 21 20 6 37 37 H 1.09005 * 109.46731 * 287.90179 * 23 22 21 38 38 H 1.08997 * 109.46995 * 47.89978 * 23 22 21 39 39 H 1.08999 * 109.47321 * 167.90313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9811 -0.8432 5 6 1.6334 2.1287 1.3084 6 7 2.2588 3.4591 1.3522 7 6 1.5252 4.5602 1.6089 8 8 0.3143 4.4843 1.6621 9 6 2.1990 5.8691 1.8272 10 8 3.4108 5.9248 1.8946 11 7 1.4650 6.9928 1.9502 12 6 2.0812 8.1898 2.1504 13 1 3.1584 8.2392 2.2110 14 6 1.3210 9.3536 2.2772 15 7 0.0143 9.2937 2.2041 16 14 2.1667 10.9963 2.5526 17 1 2.4603 11.6279 1.2410 18 1 1.2766 11.8851 3.3419 19 1 3.4354 10.7817 3.2937 20 6 3.7059 3.5563 1.1079 21 6 4.0309 2.8138 -0.1926 22 7 3.5044 1.4446 -0.1157 23 6 3.9425 0.6467 -1.2688 24 1 -0.3634 0.5471 0.8699 25 1 -0.3633 0.4799 -0.9088 26 1 -0.3634 -1.0269 0.0389 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 0.5490 2.2324 1.3459 30 1 1.9767 1.5347 2.1554 31 1 0.4975 6.9483 1.8961 32 1 -0.5141 10.1023 2.2926 33 1 4.2483 3.0994 1.9357 34 1 3.9949 4.6030 1.0141 35 1 5.1114 2.7808 -0.3322 36 1 3.5713 3.3336 -1.0332 37 1 3.4122 0.9772 -2.1619 38 1 5.0149 0.7765 -1.4141 39 1 3.7255 -0.4057 -1.0859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110748878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:43 Heat of formation + Delta-G solvation = -51.788171 kcal Electronic energy + Delta-G solvation = -21358.828748 eV Core-core repulsion = 18109.027543 eV Total energy + Delta-G solvation = -3249.801205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13666 -38.53583 -37.06191 -35.01356 -33.92265 -33.73183 -31.46746 -29.48913 -28.42750 -25.99497 -24.70838 -24.32740 -22.40329 -21.55686 -19.96714 -18.95640 -18.09078 -16.54843 -16.33810 -15.48257 -15.38969 -15.08506 -14.89095 -14.48841 -14.37028 -13.89954 -13.71512 -13.41784 -13.27993 -12.77807 -12.56441 -12.47791 -11.92530 -11.84965 -11.82926 -11.56451 -11.27265 -11.13704 -10.96333 -10.81261 -10.57280 -10.50448 -10.44438 -10.14424 -9.72851 -8.54691 -8.29680 -8.10796 -7.95435 -6.71647 -4.04099 2.40921 3.12237 3.13049 3.18071 3.29674 3.84933 4.01790 4.22319 4.68164 4.83733 4.85217 5.08121 5.15084 5.16830 5.30610 5.31912 5.37958 5.41407 5.60318 5.65131 5.71790 5.73103 5.83619 5.87060 5.89827 5.98440 6.13872 6.14799 6.30285 6.58517 6.87391 6.99492 7.10098 7.27180 7.67698 7.81102 8.29305 8.57709 8.91501 9.26892 9.80178 10.42844 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.004409 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.130356 B = 6349.717945 C = 6944.131398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.072 3.928 4 H 0.045 0.955 5 C 0.119 3.881 6 N -0.597 5.597 7 C 0.515 3.485 8 O -0.549 6.549 9 C 0.392 3.608 10 O -0.587 6.587 11 N -0.494 5.494 12 C -0.307 4.307 13 H 0.114 0.886 14 C 0.032 3.968 15 N -0.867 5.867 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.264 1.264 20 C 0.081 3.919 21 C 0.040 3.960 22 N -0.540 5.540 23 C 0.023 3.977 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.405 0.595 32 H 0.281 0.719 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 -14.244 -5.278 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.037 4.037 4 H 0.063 0.937 5 C -0.005 4.005 6 N -0.331 5.331 7 C 0.302 3.698 8 O -0.427 6.427 9 C 0.177 3.823 10 O -0.477 6.477 11 N -0.127 5.127 12 C -0.437 4.437 13 H 0.132 0.868 14 C -0.175 4.175 15 N -0.504 5.504 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.188 1.188 20 C -0.041 4.041 21 C -0.088 4.088 22 N -0.265 5.265 23 C -0.125 4.125 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.240 0.760 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.874 -14.292 -4.756 15.553 hybrid contribution -0.549 0.937 -0.703 1.294 sum 3.325 -13.355 -5.459 14.806 Atomic orbital electron populations 1.21826 0.95304 1.01715 1.02457 1.21607 0.95890 0.95220 1.02743 1.22062 0.87533 0.96320 0.97779 0.93730 1.21753 0.99429 0.82836 0.96432 1.47861 1.09659 1.05602 1.69945 1.20639 0.86719 0.85941 0.76527 1.90670 1.14108 1.86269 1.51632 1.18912 0.87592 0.84478 0.91270 1.90281 1.13125 1.84842 1.59489 1.41593 1.10434 1.05408 1.55243 1.19910 0.94628 0.82688 1.46500 0.86803 1.25611 0.95327 1.00723 0.95860 1.69480 1.05013 1.31198 1.44731 0.85711 0.79215 0.79787 0.78798 1.19863 1.20487 1.18814 1.22954 0.79301 1.06560 0.95247 1.22641 1.00138 0.87686 0.98368 1.62030 1.09812 1.13290 1.41411 1.22404 1.00433 0.98474 0.91178 0.92003 0.92762 0.92518 0.91551 0.90961 0.88735 0.91158 0.75960 0.90822 0.91676 0.82919 0.89702 0.94693 0.95835 0.91552 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.72 37.16 0.36 -1.15 16 2 C -0.12 -1.19 5.10 -26.73 -0.14 -1.33 16 3 C 0.07 0.95 2.05 -67.59 -0.14 0.81 16 4 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 5 C 0.12 1.84 5.48 -3.60 -0.02 1.82 16 6 N -0.60 -11.18 3.01 -173.20 -0.52 -11.70 16 7 C 0.52 11.59 7.73 -11.88 -0.09 11.50 16 8 O -0.55 -13.18 15.95 5.42 0.09 -13.10 16 9 C 0.39 9.79 7.67 -11.88 -0.09 9.70 16 10 O -0.59 -15.00 12.75 5.37 0.07 -14.93 16 11 N -0.49 -13.08 5.24 -11.59 -0.06 -13.14 16 12 C -0.31 -8.28 9.67 -15.15 -0.15 -8.43 16 13 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 14 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 15 N -0.87 -22.96 13.03 55.53 0.72 -22.24 16 16 Si 0.94 19.74 29.56 -169.99 -5.02 14.71 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 C 0.08 1.39 6.09 -3.60 -0.02 1.36 16 21 C 0.04 0.56 5.61 -3.70 -0.02 0.54 16 22 N -0.54 -6.95 4.73 -234.58 -1.11 -8.06 16 23 C 0.02 0.23 8.81 60.07 0.53 0.76 16 24 H 0.06 0.65 6.61 -51.93 -0.34 0.31 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.61 6.21 -51.93 -0.32 0.29 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.54 5.76 -51.93 -0.30 1.24 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.40 10.88 7.37 -40.82 -0.30 10.58 16 32 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.15 3.03 4.46 -54.23 -0.24 2.78 16 35 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.24 8.10 -51.93 -0.42 -0.18 16 38 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 39 H 0.07 0.62 6.60 -51.93 -0.34 0.27 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -29.10 312.49 -6.57 -35.66 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.57 Total: 11.76 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 0.13 Total: 16.31 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.97 Total: -55.13 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: 0.15 Total: -28.02 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.10 -6.57 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110748878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.127 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds