Wall clock time and date at job start Mon Mar 30 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47108 * 2 1 4 4 H 1.09001 * 109.49537 * 304.84850 * 3 2 1 5 5 C 1.53238 * 109.49626 * 64.93116 * 3 2 1 6 6 N 1.47079 * 108.52293 * 173.78653 * 5 3 2 7 7 C 1.34774 * 120.88007 * 128.79210 * 6 5 3 8 8 O 1.21443 * 120.00055 * 351.90447 * 7 6 5 9 9 C 1.48830 * 120.00013 * 171.90399 * 7 6 5 10 10 O 1.21496 * 119.99967 * 353.33598 * 9 7 6 11 11 N 1.34778 * 120.00131 * 173.34005 * 9 7 6 12 12 C 1.36116 * 120.00122 * 179.97438 * 11 9 7 13 13 H 1.07999 * 120.00159 * 359.97438 * 12 11 9 14 14 C 1.39589 * 119.99931 * 179.97438 * 12 11 9 15 15 N 1.31009 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99849 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46826 * 90.00186 * 16 14 12 18 18 H 1.48495 * 109.47011 * 210.00226 * 16 14 12 19 19 H 1.48494 * 109.47128 * 330.00318 * 16 14 12 20 20 C 1.47075 * 118.23979 * 308.81715 * 6 5 3 21 21 C 1.53245 * 108.52195 * 51.17924 * 20 6 5 22 22 N 1.46895 * 109.33905 * 306.17406 * 21 20 6 23 23 C 1.46905 * 110.99680 * 187.25119 * 22 21 20 24 24 H 1.09001 * 109.47381 * 302.16849 * 1 2 3 25 25 H 1.09009 * 109.46999 * 62.16513 * 1 2 3 26 26 H 1.09003 * 109.47514 * 182.16830 * 1 2 3 27 27 H 1.09004 * 109.46669 * 239.99849 * 2 1 3 28 28 H 1.09002 * 109.46527 * 120.00123 * 2 1 3 29 29 H 1.09004 * 109.62899 * 293.49950 * 5 3 2 30 30 H 1.08997 * 109.62786 * 54.07750 * 5 3 2 31 31 H 0.97003 * 119.99720 * 359.97438 * 11 9 7 32 32 H 0.96998 * 120.00536 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.62309 * 291.47614 * 20 6 5 34 34 H 1.09000 * 109.79055 * 170.98977 * 20 6 5 35 35 H 1.08994 * 109.49076 * 186.21036 * 21 20 6 36 36 H 1.08999 * 109.50874 * 66.14806 * 21 20 6 37 37 H 1.09005 * 109.46731 * 287.90179 * 23 22 21 38 38 H 1.08997 * 109.46995 * 47.89978 * 23 22 21 39 39 H 1.08999 * 109.47321 * 167.90313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9811 -0.8432 5 6 1.6334 2.1287 1.3084 6 7 2.2588 3.4591 1.3522 7 6 1.5252 4.5602 1.6089 8 8 0.3143 4.4843 1.6621 9 6 2.1990 5.8691 1.8272 10 8 3.4108 5.9248 1.8946 11 7 1.4650 6.9928 1.9502 12 6 2.0812 8.1898 2.1504 13 1 3.1584 8.2392 2.2110 14 6 1.3210 9.3536 2.2772 15 7 0.0143 9.2937 2.2041 16 14 2.1667 10.9963 2.5526 17 1 2.4603 11.6279 1.2410 18 1 1.2766 11.8851 3.3419 19 1 3.4354 10.7817 3.2937 20 6 3.7059 3.5563 1.1079 21 6 4.0309 2.8138 -0.1926 22 7 3.5044 1.4446 -0.1157 23 6 3.9425 0.6467 -1.2688 24 1 -0.3634 0.5471 0.8699 25 1 -0.3633 0.4799 -0.9088 26 1 -0.3634 -1.0269 0.0389 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 0.5490 2.2324 1.3459 30 1 1.9767 1.5347 2.1554 31 1 0.4975 6.9483 1.8961 32 1 -0.5141 10.1023 2.2926 33 1 4.2483 3.0994 1.9357 34 1 3.9949 4.6030 1.0141 35 1 5.1114 2.7808 -0.3322 36 1 3.5713 3.3336 -1.0332 37 1 3.4122 0.9772 -2.1619 38 1 5.0149 0.7765 -1.4141 39 1 3.7255 -0.4057 -1.0859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110748878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:42 Heat of formation + Delta-G solvation = -73.376992 kcal Electronic energy + Delta-G solvation = -21359.764909 eV Core-core repulsion = 18109.027543 eV Total energy + Delta-G solvation = -3250.737367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74534 -40.01619 -38.88071 -36.72433 -35.57087 -34.79091 -33.47483 -30.62512 -29.69574 -27.81460 -26.00290 -25.49868 -23.93068 -22.78934 -21.25570 -20.68039 -19.94300 -18.31596 -17.94190 -17.03621 -16.81226 -16.51906 -16.30902 -15.98957 -15.64476 -15.46082 -15.05813 -14.90246 -14.66139 -14.15295 -13.95427 -13.68626 -13.54008 -13.04163 -12.95504 -12.81333 -12.62575 -12.57089 -12.41766 -12.11762 -12.09371 -11.95583 -11.74632 -11.60732 -11.50726 -10.30224 -9.90358 -9.82460 -9.32237 -8.67131 -6.11787 0.54807 1.40906 1.47035 1.55216 1.69410 2.26434 2.31178 2.82428 3.05329 3.14468 3.70186 3.81619 3.90990 4.04558 4.12627 4.23156 4.34384 4.38039 4.50352 4.59403 4.62531 4.73274 4.75419 4.84288 4.96379 5.02333 5.10289 5.14892 5.24562 5.26831 5.37734 5.43063 5.66797 5.96684 6.00100 6.17649 6.32059 6.74621 6.94101 7.25598 7.77971 8.48557 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.004409 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.130356 B = 6349.717945 C = 6944.131398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.077 3.923 4 H 0.027 0.973 5 C 0.114 3.886 6 N -0.587 5.587 7 C 0.514 3.486 8 O -0.571 6.571 9 C 0.389 3.611 10 O -0.596 6.596 11 N -0.508 5.508 12 C -0.343 4.343 13 H 0.103 0.897 14 C -0.004 4.004 15 N -0.896 5.896 16 Si 1.011 2.989 17 H -0.264 1.264 18 H -0.268 1.268 19 H -0.262 1.262 20 C 0.080 3.920 21 C 0.048 3.952 22 N -0.543 5.543 23 C 0.023 3.977 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.289 0.711 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.079 0.921 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -15.667 -5.827 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.032 4.032 4 H 0.045 0.955 5 C -0.008 4.008 6 N -0.320 5.320 7 C 0.299 3.701 8 O -0.451 6.451 9 C 0.175 3.825 10 O -0.487 6.487 11 N -0.141 5.141 12 C -0.473 4.473 13 H 0.121 0.879 14 C -0.209 4.209 15 N -0.534 5.534 16 Si 0.832 3.168 17 H -0.189 1.189 18 H -0.193 1.193 19 H -0.186 1.186 20 C -0.042 4.042 21 C -0.080 4.080 22 N -0.268 5.268 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.234 0.766 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.966 -15.766 -5.323 17.365 hybrid contribution -0.838 1.236 -0.553 1.592 sum 4.128 -14.530 -5.876 16.207 Atomic orbital electron populations 1.21828 0.95112 1.02739 1.01598 1.21573 0.95955 0.92976 1.04004 1.22026 0.88022 0.97833 0.95355 0.95505 1.22023 0.98853 0.81167 0.98715 1.47996 1.10352 1.05859 1.67759 1.20223 0.86524 0.86094 0.77246 1.90653 1.14737 1.86553 1.53168 1.19460 0.87642 0.85247 0.90141 1.90296 1.13521 1.85535 1.59349 1.41694 1.10131 1.05978 1.56279 1.20030 0.94458 0.83740 1.49078 0.87902 1.26569 0.95883 1.03875 0.94540 1.69552 1.06293 1.32629 1.44895 0.84678 0.78156 0.74938 0.79058 1.18896 1.19278 1.18609 1.22881 0.78191 1.05592 0.97522 1.22527 1.01649 0.88157 0.95674 1.62046 1.09257 1.12428 1.43050 1.22508 1.01246 0.98830 0.89890 0.93287 0.93303 0.90502 0.89728 0.90118 0.89698 0.89616 0.76636 0.90076 0.90700 0.85666 0.87127 0.95946 0.95861 0.90180 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.72 71.98 0.70 -2.02 16 2 C -0.11 -1.88 5.10 30.59 0.16 -1.73 16 3 C 0.08 1.89 2.05 44.99 0.09 1.99 16 4 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 5 C 0.11 3.46 5.48 86.35 0.47 3.93 16 6 N -0.59 -22.05 3.01 -820.22 -2.47 -24.51 16 7 C 0.51 23.75 7.73 87.08 0.67 24.42 16 8 O -0.57 -28.27 15.95 -3.54 -0.06 -28.33 16 9 C 0.39 20.15 7.67 87.08 0.67 20.82 16 10 O -0.60 -31.42 12.75 -3.70 -0.05 -31.47 16 11 N -0.51 -28.02 5.24 -308.88 -1.62 -29.64 16 12 C -0.34 -19.14 9.67 84.35 0.82 -18.33 16 13 H 0.10 5.82 7.15 -2.91 -0.02 5.80 16 14 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 15 N -0.90 -48.19 13.03 21.77 0.28 -47.90 16 16 Si 1.01 40.37 29.56 68.60 2.03 42.40 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 20 C 0.08 2.68 6.09 86.35 0.53 3.21 16 21 C 0.05 1.28 5.61 86.39 0.48 1.77 16 22 N -0.54 -12.54 4.73 -896.09 -4.24 -16.78 16 23 C 0.02 0.38 8.81 127.69 1.13 1.50 16 24 H 0.05 0.98 6.61 -2.39 -0.02 0.97 16 25 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.23 6.21 -2.38 -0.01 1.21 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.76 5.76 -2.39 -0.01 2.75 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.40 22.47 7.37 -92.71 -0.68 21.79 16 32 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.13 5.04 4.46 -38.83 -0.17 4.87 16 35 H 0.11 2.37 7.97 -2.39 -0.02 2.35 16 36 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.02 0.40 8.10 -2.38 -0.02 0.38 16 38 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 39 H 0.09 1.18 6.60 -2.39 -0.02 1.16 16 Total: -1.00 -63.97 312.49 0.29 -63.69 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.22 Total: 36.73 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 6.18 Total: 35.81 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -8.04 Total: -118.83 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -0.10 Total: -59.79 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -63.97 0.29 -63.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110748878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.688 kcal (2) G-P(sol) polarization free energy of solvation -63.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds