Wall clock time and date at job start Mon Mar 30 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00397 * 2 1 4 4 C 1.53239 * 109.33938 * 187.25237 * 3 2 1 5 5 N 1.47071 * 108.52579 * 306.17009 * 4 3 2 6 6 C 1.34778 * 120.88557 * 231.21016 * 5 4 3 7 7 O 1.21430 * 120.00445 * 171.84285 * 6 5 4 8 8 C 1.48832 * 119.99354 * 351.84507 * 6 5 4 9 9 O 1.21497 * 120.00348 * 353.24271 * 8 6 5 10 10 N 1.34782 * 119.99947 * 173.24511 * 8 6 5 11 11 C 1.36117 * 120.00044 * 179.97438 * 10 8 6 12 12 H 1.07996 * 119.99889 * 359.97438 * 11 10 8 13 13 C 1.39586 * 119.99562 * 180.02562 * 11 10 8 14 14 N 1.31013 * 120.00374 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47145 * 59.99396 * 15 13 11 17 17 H 1.48502 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46932 * 299.99569 * 15 13 11 19 19 C 1.47085 * 118.23576 * 51.18290 * 5 4 3 20 20 C 1.46901 * 110.99982 * 124.29991 * 2 1 3 21 21 C 1.52992 * 109.49575 * 292.70802 * 20 2 1 22 22 C 1.53004 * 109.49181 * 52.76013 * 20 2 1 23 23 H 1.09010 * 109.47219 * 295.69874 * 1 2 3 24 24 H 1.09000 * 109.47534 * 55.69525 * 1 2 3 25 25 H 1.09000 * 109.47558 * 175.70190 * 1 2 3 26 26 H 1.08995 * 109.48766 * 307.21557 * 3 2 1 27 27 H 1.08994 * 109.49311 * 67.29397 * 3 2 1 28 28 H 1.09002 * 109.62379 * 186.45944 * 4 3 2 29 29 H 1.09002 * 109.62561 * 65.88390 * 4 3 2 30 30 H 0.97004 * 119.99430 * 359.97438 * 10 8 6 31 31 H 0.97006 * 119.99890 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.62556 * 189.10583 * 19 5 4 33 33 H 1.08997 * 109.62711 * 68.52847 * 19 5 4 34 34 H 1.08996 * 109.47533 * 59.99690 * 21 20 2 35 35 H 1.09004 * 109.47184 * 180.02562 * 21 20 2 36 36 H 1.09001 * 109.46979 * 299.99526 * 21 20 2 37 37 H 1.09002 * 109.47349 * 59.99776 * 22 20 2 38 38 H 1.09002 * 109.47174 * 179.97438 * 22 20 2 39 39 H 1.08997 * 109.46875 * 300.00067 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0869 0.4459 0.8441 6 6 5.1053 0.8583 1.6248 7 8 5.4664 0.1762 2.5623 8 6 5.7871 2.1497 1.3378 9 8 5.5105 2.7724 0.3318 10 7 6.7115 2.6286 2.1938 11 6 7.3355 3.8094 1.9311 12 1 7.0901 4.3624 1.0365 13 6 8.2932 4.3049 2.8174 14 7 8.5912 3.6338 3.9024 15 14 9.1491 5.9259 2.4572 16 1 8.1392 7.0116 2.3763 17 1 10.1144 6.2283 3.5445 18 1 9.8737 5.8265 1.1648 19 6 3.5163 -0.9011 0.9968 20 6 1.9954 -0.7728 1.1329 21 6 1.6586 -0.0548 2.4413 22 6 1.3635 -2.1663 1.1380 23 1 -0.3634 0.4457 0.9261 24 1 -0.3634 0.5792 -0.8489 25 1 -0.3634 -1.0247 -0.0770 26 1 1.5456 1.9336 -0.8183 27 1 1.7556 1.8531 0.9478 28 1 3.9255 2.3350 -0.0689 29 1 3.7561 0.9449 -1.1733 30 1 6.9321 2.1316 2.9971 31 1 9.2566 3.9784 4.5185 32 1 3.9255 -1.3730 1.8901 33 1 3.7560 -1.5018 0.1194 34 1 0.5768 0.0383 2.5366 35 1 2.0498 -0.6284 3.2816 36 1 2.1098 0.9374 2.4377 37 1 1.6044 -2.6779 0.2062 38 1 1.7546 -2.7396 1.9785 39 1 0.2815 -2.0742 1.2327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110749073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:46 Heat of formation + Delta-G solvation = -42.870677 kcal Electronic energy + Delta-G solvation = -21738.891407 eV Core-core repulsion = 18489.476893 eV Total energy + Delta-G solvation = -3249.414514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40224 -38.76651 -37.07324 -34.98659 -33.83776 -32.97081 -31.45940 -28.88188 -27.33346 -27.27929 -25.77949 -24.39933 -22.69290 -21.94919 -19.22651 -18.44404 -17.97917 -16.55963 -16.33646 -15.74610 -15.30377 -15.03883 -14.68057 -14.46097 -14.32141 -13.89165 -13.79912 -13.24584 -13.09460 -12.68669 -12.43632 -12.20544 -11.99015 -11.88728 -11.73266 -11.47343 -11.29150 -11.17861 -11.11229 -10.94170 -10.64771 -10.54290 -10.44288 -10.13144 -9.71198 -8.49488 -8.28814 -8.04455 -7.94493 -6.71207 -4.03756 2.42191 3.12792 3.15254 3.15697 3.30339 3.88644 4.02324 4.23035 4.66534 4.85057 4.91185 5.06836 5.11897 5.16269 5.28780 5.47963 5.53319 5.54017 5.59804 5.72996 5.74486 5.79427 5.81517 5.83235 5.98564 6.01104 6.07692 6.19585 6.37863 6.59542 6.90086 7.05244 7.13722 7.27394 7.68261 7.82307 8.29895 8.58796 8.91875 9.27300 9.80629 10.43184 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.004584 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.471359 B = 6106.983864 C = 6480.352989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.035 3.965 4 C 0.082 3.918 5 N -0.594 5.594 6 C 0.515 3.485 7 O -0.549 6.549 8 C 0.392 3.608 9 O -0.587 6.587 10 N -0.494 5.494 11 C -0.307 4.307 12 H 0.114 0.886 13 C 0.032 3.968 14 N -0.867 5.867 15 Si 0.940 3.060 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.125 3.875 20 C 0.093 3.907 21 C -0.177 4.177 22 C -0.139 4.139 23 H 0.026 0.974 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.154 0.846 29 H 0.064 0.936 30 H 0.405 0.595 31 H 0.282 0.718 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -6.731 -4.309 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.093 4.093 4 C -0.040 4.040 5 N -0.328 5.328 6 C 0.302 3.698 7 O -0.426 6.426 8 C 0.177 3.823 9 O -0.477 6.477 10 N -0.127 5.127 11 C -0.438 4.438 12 H 0.131 0.869 13 C -0.175 4.175 14 N -0.505 5.505 15 Si 0.765 3.235 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.002 3.998 20 C 0.002 3.998 21 C -0.235 4.235 22 C -0.197 4.197 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.170 0.830 29 H 0.083 0.917 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.731 -6.897 -4.694 15.221 hybrid contribution 0.136 0.726 1.061 1.293 sum -12.595 -6.171 -3.633 14.489 Atomic orbital electron populations 1.22446 0.88029 1.02089 1.00319 1.62250 1.07290 1.14073 1.42019 1.22677 0.96702 0.88906 1.01031 1.22945 0.90579 0.99909 0.90553 1.47819 1.33742 1.14734 1.36458 1.20614 0.80085 0.87670 0.81444 1.90668 1.65029 1.57829 1.29115 1.18933 0.87676 0.88025 0.87659 1.90284 1.67006 1.61481 1.28974 1.41588 1.30855 1.19574 1.20671 1.19856 1.17837 0.97414 1.08661 0.86872 1.25605 0.96929 1.00193 0.94767 1.69478 1.31303 1.38963 1.10710 0.85770 0.78893 0.80395 0.78398 1.19338 1.20577 1.19305 1.21695 0.90705 0.84628 1.02790 1.21408 0.95059 0.94191 0.89112 1.22392 1.00958 1.02101 0.98093 1.21880 1.00482 0.94872 1.02477 0.95590 0.91621 0.91166 0.89903 0.94085 0.83002 0.91737 0.75967 0.90781 0.88937 0.91194 0.92779 0.91837 0.91842 0.91626 0.91903 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.76 60.06 0.53 0.72 16 2 N -0.53 -6.72 4.68 -226.87 -1.06 -7.78 16 3 C 0.04 0.49 5.25 -3.70 -0.02 0.47 16 4 C 0.08 1.39 6.09 -3.61 -0.02 1.37 16 5 N -0.59 -10.92 2.48 -173.21 -0.43 -11.35 16 6 C 0.52 11.46 7.72 -11.87 -0.09 11.37 16 7 O -0.55 -13.05 15.95 5.43 0.09 -12.97 16 8 C 0.39 9.73 7.67 -11.87 -0.09 9.64 16 9 O -0.59 -14.94 12.76 5.37 0.07 -14.88 16 10 N -0.49 -13.04 5.24 -11.59 -0.06 -13.10 16 11 C -0.31 -8.28 9.67 -15.15 -0.15 -8.43 16 12 H 0.11 3.08 7.15 -52.49 -0.38 2.71 16 13 C 0.03 0.83 5.51 -17.40 -0.10 0.73 16 14 N -0.87 -22.95 13.03 55.53 0.72 -22.23 16 15 Si 0.94 19.74 29.56 -169.99 -5.02 14.72 16 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C 0.13 1.93 5.29 -3.60 -0.02 1.91 16 20 C 0.09 1.19 0.69 -131.48 -0.09 1.10 16 21 C -0.18 -2.37 7.68 37.15 0.29 -2.08 16 22 C -0.14 -1.40 8.00 37.16 0.30 -1.10 16 23 H 0.03 0.26 6.52 -51.92 -0.34 -0.08 16 24 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.07 0.62 6.20 -51.93 -0.32 0.30 16 26 H 0.08 1.00 8.06 -51.93 -0.42 0.59 16 27 H 0.04 0.60 6.10 -51.93 -0.32 0.29 16 28 H 0.15 3.00 4.45 -54.22 -0.24 2.75 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.40 10.85 7.37 -40.82 -0.30 10.55 16 31 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 32 H 0.09 1.50 7.05 -51.93 -0.37 1.13 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.53 6.32 -51.93 -0.33 0.21 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -28.83 306.18 -5.87 -34.71 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.33 Total: 12.59 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 0.53 Total: 15.68 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.83 Total: -54.47 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.16 Total: -27.84 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.83 -5.87 -34.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110749073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.162 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds