Wall clock time and date at job start Mon Mar 30 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00397 * 2 1 4 4 C 1.53239 * 109.33938 * 187.25237 * 3 2 1 5 5 N 1.47071 * 108.52579 * 306.17009 * 4 3 2 6 6 C 1.34778 * 120.88557 * 231.21016 * 5 4 3 7 7 O 1.21430 * 120.00445 * 171.84285 * 6 5 4 8 8 C 1.48832 * 119.99354 * 351.84507 * 6 5 4 9 9 O 1.21497 * 120.00348 * 353.24271 * 8 6 5 10 10 N 1.34782 * 119.99947 * 173.24511 * 8 6 5 11 11 C 1.36117 * 120.00044 * 179.97438 * 10 8 6 12 12 H 1.07996 * 119.99889 * 359.97438 * 11 10 8 13 13 C 1.39586 * 119.99562 * 180.02562 * 11 10 8 14 14 N 1.31013 * 120.00374 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47145 * 59.99396 * 15 13 11 17 17 H 1.48502 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46932 * 299.99569 * 15 13 11 19 19 C 1.47085 * 118.23576 * 51.18290 * 5 4 3 20 20 C 1.46901 * 110.99982 * 124.29991 * 2 1 3 21 21 C 1.52992 * 109.49575 * 292.70802 * 20 2 1 22 22 C 1.53004 * 109.49181 * 52.76013 * 20 2 1 23 23 H 1.09010 * 109.47219 * 295.69874 * 1 2 3 24 24 H 1.09000 * 109.47534 * 55.69525 * 1 2 3 25 25 H 1.09000 * 109.47558 * 175.70190 * 1 2 3 26 26 H 1.08995 * 109.48766 * 307.21557 * 3 2 1 27 27 H 1.08994 * 109.49311 * 67.29397 * 3 2 1 28 28 H 1.09002 * 109.62379 * 186.45944 * 4 3 2 29 29 H 1.09002 * 109.62561 * 65.88390 * 4 3 2 30 30 H 0.97004 * 119.99430 * 359.97438 * 10 8 6 31 31 H 0.97006 * 119.99890 * 180.02562 * 14 13 11 32 32 H 1.09003 * 109.62556 * 189.10583 * 19 5 4 33 33 H 1.08997 * 109.62711 * 68.52847 * 19 5 4 34 34 H 1.08996 * 109.47533 * 59.99690 * 21 20 2 35 35 H 1.09004 * 109.47184 * 180.02562 * 21 20 2 36 36 H 1.09001 * 109.46979 * 299.99526 * 21 20 2 37 37 H 1.09002 * 109.47349 * 59.99776 * 22 20 2 38 38 H 1.09002 * 109.47174 * 179.97438 * 22 20 2 39 39 H 1.08997 * 109.46875 * 300.00067 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0869 0.4459 0.8441 6 6 5.1053 0.8583 1.6248 7 8 5.4664 0.1762 2.5623 8 6 5.7871 2.1497 1.3378 9 8 5.5105 2.7724 0.3318 10 7 6.7115 2.6286 2.1938 11 6 7.3355 3.8094 1.9311 12 1 7.0901 4.3624 1.0365 13 6 8.2932 4.3049 2.8174 14 7 8.5912 3.6338 3.9024 15 14 9.1491 5.9259 2.4572 16 1 8.1392 7.0116 2.3763 17 1 10.1144 6.2283 3.5445 18 1 9.8737 5.8265 1.1648 19 6 3.5163 -0.9011 0.9968 20 6 1.9954 -0.7728 1.1329 21 6 1.6586 -0.0548 2.4413 22 6 1.3635 -2.1663 1.1380 23 1 -0.3634 0.4457 0.9261 24 1 -0.3634 0.5792 -0.8489 25 1 -0.3634 -1.0247 -0.0770 26 1 1.5456 1.9336 -0.8183 27 1 1.7556 1.8531 0.9478 28 1 3.9255 2.3350 -0.0689 29 1 3.7561 0.9449 -1.1733 30 1 6.9321 2.1316 2.9971 31 1 9.2566 3.9784 4.5185 32 1 3.9255 -1.3730 1.8901 33 1 3.7560 -1.5018 0.1194 34 1 0.5768 0.0383 2.5366 35 1 2.0498 -0.6284 3.2816 36 1 2.1098 0.9374 2.4377 37 1 1.6044 -2.6779 0.2062 38 1 1.7546 -2.7396 1.9785 39 1 0.2815 -2.0742 1.2327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110749073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:46 Heat of formation + Delta-G solvation = -64.218373 kcal Electronic energy + Delta-G solvation = -21739.817113 eV Core-core repulsion = 18489.476893 eV Total energy + Delta-G solvation = -3250.340219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88732 -40.30464 -38.91089 -36.72902 -35.54453 -34.05167 -33.46332 -30.07392 -28.69539 -28.29862 -27.52524 -25.68567 -24.03684 -23.48641 -21.00236 -20.14793 -19.37228 -18.31244 -17.90632 -17.10420 -16.79905 -16.76213 -15.97959 -15.96228 -15.57945 -15.42359 -15.25618 -14.82482 -14.51694 -14.15301 -13.71646 -13.65416 -13.20993 -13.04260 -12.95373 -12.88723 -12.63895 -12.56651 -12.31274 -12.15181 -12.12409 -12.09866 -11.87814 -11.79683 -11.56737 -10.29538 -9.85761 -9.79950 -9.20737 -8.66495 -6.11256 0.57227 1.40804 1.49148 1.53419 1.71098 2.26723 2.32816 2.87165 3.07243 3.15491 3.64800 3.85507 3.91908 4.01487 4.05241 4.26152 4.37857 4.51509 4.54419 4.64714 4.68166 4.72855 4.79908 4.84163 4.92828 4.99719 5.06453 5.12015 5.22013 5.26016 5.33907 5.45302 5.67406 6.01752 6.07525 6.22121 6.33180 6.76407 6.95583 7.26642 7.78883 8.48922 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.004584 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.471359 B = 6106.983864 C = 6480.352989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.044 3.956 4 C 0.081 3.919 5 N -0.582 5.582 6 C 0.515 3.485 7 O -0.571 6.571 8 C 0.389 3.611 9 O -0.597 6.597 10 N -0.509 5.509 11 C -0.344 4.344 12 H 0.103 0.897 13 C -0.004 4.004 14 N -0.896 5.896 15 Si 1.011 2.989 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.264 1.264 19 C 0.119 3.881 20 C 0.096 3.904 21 C -0.173 4.173 22 C -0.133 4.133 23 H 0.027 0.973 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.030 0.970 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.399 0.601 31 H 0.289 0.711 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 -7.217 -5.200 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.084 4.084 4 C -0.041 4.041 5 N -0.314 5.314 6 C 0.300 3.700 7 O -0.451 6.451 8 C 0.175 3.825 9 O -0.487 6.487 10 N -0.142 5.142 11 C -0.474 4.474 12 H 0.120 0.880 13 C -0.209 4.209 14 N -0.534 5.534 15 Si 0.831 3.169 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.188 1.188 19 C -0.003 4.003 20 C 0.005 3.995 21 C -0.231 4.231 22 C -0.190 4.190 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.048 0.952 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.233 0.767 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.441 -7.403 -5.616 17.172 hybrid contribution 0.540 0.795 1.270 1.592 sum -13.901 -6.608 -4.346 15.994 Atomic orbital electron populations 1.22545 0.85791 1.03584 1.00929 1.62251 1.09181 1.12800 1.41650 1.22537 0.94238 0.90238 1.01413 1.22854 0.92875 0.98025 0.90314 1.47913 1.32083 1.16091 1.35306 1.20165 0.81074 0.86701 0.82068 1.90649 1.66144 1.58100 1.30182 1.19515 0.87096 0.88763 0.87151 1.90300 1.67146 1.62156 1.29146 1.41690 1.31703 1.19859 1.20906 1.19981 1.19709 0.98316 1.09355 0.87957 1.26558 0.96739 1.03514 0.94043 1.69553 1.31813 1.40587 1.11446 0.84744 0.77835 0.75740 0.78567 1.18706 1.19253 1.18822 1.21996 0.92714 0.82614 1.02985 1.21417 0.93137 0.96068 0.88873 1.22358 1.01990 1.00319 0.98455 1.21851 1.01342 0.92642 1.03204 0.95484 0.90418 0.89342 0.87642 0.95154 0.85863 0.90906 0.76653 0.90097 0.89940 0.89738 0.90745 0.92253 0.94888 0.90893 0.91304 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.76 127.69 1.12 1.42 16 2 N -0.53 -11.99 4.68 -871.69 -4.08 -16.07 16 3 C 0.04 1.16 5.25 86.38 0.45 1.61 16 4 C 0.08 2.71 6.09 86.35 0.53 3.24 16 5 N -0.58 -21.46 2.48 -820.23 -2.03 -23.49 16 6 C 0.51 23.57 7.72 87.08 0.67 24.24 16 7 O -0.57 -28.00 15.95 -3.50 -0.06 -28.06 16 8 C 0.39 20.09 7.67 87.08 0.67 20.76 16 9 O -0.60 -31.45 12.76 -3.71 -0.05 -31.50 16 10 N -0.51 -28.05 5.24 -308.87 -1.62 -29.67 16 11 C -0.34 -19.19 9.67 84.35 0.82 -18.38 16 12 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 13 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 14 N -0.90 -48.28 13.03 21.76 0.28 -47.99 16 15 Si 1.01 40.46 29.56 68.60 2.03 42.48 16 16 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 19 C 0.12 3.53 5.29 86.35 0.46 3.99 16 20 C 0.10 2.24 0.69 3.61 0.00 2.24 16 21 C -0.17 -4.39 7.68 71.98 0.55 -3.84 16 22 C -0.13 -2.20 8.00 71.98 0.58 -1.62 16 23 H 0.03 0.45 6.52 -2.38 -0.02 0.43 16 24 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 25 H 0.09 1.16 6.20 -2.39 -0.01 1.14 16 26 H 0.11 2.30 8.06 -2.39 -0.02 2.28 16 27 H 0.03 0.87 6.10 -2.39 -0.01 0.86 16 28 H 0.12 4.97 4.45 -38.75 -0.17 4.80 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.40 22.47 7.37 -92.71 -0.68 21.79 16 31 H 0.29 14.28 8.30 -92.70 -0.77 13.51 16 32 H 0.08 2.64 7.05 -2.39 -0.02 2.62 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 1.57 6.59 -2.39 -0.02 1.55 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 1.03 5.93 -2.39 -0.01 1.02 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.05 6.32 -2.39 -0.02 1.03 16 Total: -1.00 -63.74 306.18 1.03 -62.71 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.23 Total: 37.67 kcal Atomic # 6 Polarization: 27.61 SS G_CDS: 6.31 Total: 33.92 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.44 Total: -117.23 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -0.10 Total: -59.56 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -63.74 1.03 -62.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110749073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -63.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds