Wall clock time and date at job start Mon Mar 30 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 119.99964 * 2 1 4 4 N 1.34776 * 120.00425 * 180.02562 * 2 1 3 5 5 C 1.46937 * 120.62599 * 354.41203 * 4 2 1 6 6 C 1.53187 * 108.77332 * 233.58506 * 5 4 2 7 7 C 1.53041 * 109.31554 * 305.36881 * 6 5 4 8 8 C 1.53034 * 109.54172 * 61.36591 * 7 6 5 9 9 H 1.09005 * 109.49631 * 58.58228 * 8 7 6 10 10 C 1.50691 * 109.50189 * 178.68423 * 8 7 6 11 11 O 1.20829 * 119.99904 * 359.83548 * 10 8 7 12 12 O 1.34229 * 120.00287 * 179.83566 * 10 8 7 13 13 C 1.45205 * 117.00036 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.46939 * 29.99926 * 13 12 10 15 15 C 1.52996 * 109.47059 * 270.00238 * 13 12 10 16 16 C 1.50699 * 109.46839 * 150.00135 * 13 12 10 17 17 H 1.07999 * 120.00531 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99756 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99671 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46682 * 90.00236 * 20 18 16 22 22 H 1.48496 * 109.47108 * 210.00276 * 20 18 16 23 23 H 1.48503 * 109.47221 * 330.00643 * 20 18 16 24 24 C 1.46922 * 120.63380 * 174.39012 * 4 2 1 25 25 H 1.09004 * 109.47470 * 184.87773 * 1 2 3 26 26 H 1.09003 * 109.47465 * 304.87845 * 1 2 3 27 27 H 1.09003 * 109.47714 * 64.88125 * 1 2 3 28 28 H 1.08997 * 109.58663 * 353.37666 * 5 4 2 29 29 H 1.08999 * 109.58276 * 113.79990 * 5 4 2 30 30 H 1.09007 * 109.49671 * 65.31769 * 6 5 4 31 31 H 1.09003 * 109.49888 * 185.38005 * 6 5 4 32 32 H 1.09007 * 109.45875 * 181.38828 * 7 6 5 33 33 H 1.09001 * 109.45664 * 301.35631 * 7 6 5 34 34 H 1.08997 * 109.47454 * 60.00123 * 15 13 12 35 35 H 1.09003 * 109.47086 * 180.02562 * 15 13 12 36 36 H 1.09004 * 109.47059 * 299.99567 * 15 13 12 37 37 H 0.97006 * 119.99795 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.58771 * 246.19861 * 24 4 2 39 39 H 1.08995 * 109.58568 * 6.62510 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4654 -2.4447 0.1220 6 6 2.0723 -3.2403 1.2819 7 6 3.5804 -3.3828 1.0637 8 6 4.2273 -1.9961 1.0386 9 1 4.0230 -1.4824 1.9781 10 6 5.7162 -2.1388 0.8560 11 8 6.2105 -3.2371 0.7590 12 8 6.4935 -1.0458 0.8011 13 6 7.9188 -1.2588 0.6230 14 1 8.0811 -2.1741 0.0539 15 6 8.5907 -1.3836 1.9919 16 6 8.5117 -0.0915 -0.1231 17 1 7.8807 0.7287 -0.4322 18 6 9.8602 -0.0699 -0.4103 19 7 10.6287 -1.0684 -0.0334 20 14 10.5951 1.3767 -1.3358 21 1 11.0381 2.4108 -0.3665 22 1 11.7594 0.9143 -2.1330 23 1 9.5719 1.9550 -2.2435 24 6 3.6448 -1.1863 -0.1241 25 1 -0.3634 -1.0240 0.0874 26 1 -0.3634 0.5877 0.8431 27 1 -0.3635 0.4362 -0.9305 28 1 0.4107 -2.2552 0.3212 29 1 1.5686 -3.0114 -0.8033 30 1 1.8884 -2.7148 2.2191 31 1 1.6152 -4.2290 1.3234 32 1 4.0109 -3.9697 1.8751 33 1 3.7639 -3.8861 0.1144 34 1 8.1618 -2.2279 2.5316 35 1 9.6607 -1.5430 1.8583 36 1 8.4284 -0.4682 2.5611 37 1 11.5773 -1.0535 -0.2357 38 1 3.9257 -1.6505 -1.0695 39 1 4.0279 -0.1665 -0.0873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:03 Heat of formation + Delta-G solvation = -130.326012 kcal Electronic energy + Delta-G solvation = -21211.846667 eV Core-core repulsion = 17926.347055 eV Total energy + Delta-G solvation = -3285.499613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48847 -39.40239 -37.31093 -35.69618 -33.33164 -33.11637 -31.75854 -29.86169 -29.31664 -25.46024 -25.28778 -24.31538 -22.26384 -20.84496 -19.40522 -19.08875 -17.42199 -16.81259 -16.57135 -16.14822 -15.65113 -15.29179 -14.98402 -14.55603 -14.31671 -13.91999 -13.45344 -13.38176 -13.16369 -12.93891 -12.42825 -12.23991 -12.11322 -11.95013 -11.49540 -11.21050 -11.10359 -11.03831 -10.98905 -10.79737 -10.68087 -10.36759 -10.25648 -9.92137 -9.59410 -9.51198 -8.89139 -8.77577 -8.47141 -6.16467 -4.23012 2.52748 2.74375 3.04276 3.27460 3.32592 3.36897 3.64621 4.34733 4.39294 4.50649 4.70773 4.73279 4.90136 4.95879 5.14826 5.16771 5.19805 5.25759 5.36348 5.53467 5.65446 5.67610 5.77478 5.79857 5.92185 6.13052 6.22778 6.34144 6.64697 6.89346 6.92179 7.17148 7.28742 7.61765 7.73559 7.94340 8.08348 8.15697 8.63502 8.90177 9.42490 10.90991 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.004809 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.822591 B = 5821.488320 C = 6733.817718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.540 6.540 4 N -0.613 5.613 5 C 0.099 3.901 6 C -0.134 4.134 7 C -0.105 4.105 8 C -0.096 4.096 9 H 0.105 0.895 10 C 0.458 3.542 11 O -0.518 6.518 12 O -0.353 6.353 13 C 0.215 3.785 14 H 0.047 0.953 15 C -0.155 4.155 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.911 3.089 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.122 3.878 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.015 0.985 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.439 -4.088 1.499 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.299 3.701 3 O -0.417 6.417 4 N -0.348 5.348 5 C -0.024 4.024 6 C -0.172 4.172 7 C -0.142 4.142 8 C -0.116 4.116 9 H 0.123 0.877 10 C 0.300 3.700 11 O -0.408 6.408 12 O -0.269 6.269 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.213 4.213 16 C -0.558 4.558 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.738 3.262 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.001 4.001 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.722 -3.869 1.444 20.150 hybrid contribution 0.641 0.451 -0.345 0.856 sum -19.082 -3.418 1.099 19.417 Atomic orbital electron populations 1.22033 0.91949 1.04443 1.05294 1.20812 0.90559 0.83103 0.75634 1.90764 1.70509 1.30956 1.49445 1.48196 1.07249 1.06291 1.73041 1.21961 0.96714 0.84412 0.99273 1.21948 0.95960 1.00667 0.98629 1.21412 0.93921 0.94851 1.04057 1.21356 0.89517 0.98886 1.01844 0.87702 1.23067 0.89800 0.83740 0.73378 1.90596 1.76018 1.27942 1.46277 1.86512 1.24823 1.35012 1.80511 1.20652 0.69659 0.98901 0.94561 0.93561 1.22164 1.04588 0.97756 0.96752 1.21045 0.93474 1.05066 1.36205 0.91232 1.24884 0.96461 0.96790 0.95814 1.69903 1.05937 1.30877 1.46110 0.86274 0.78599 0.81648 0.79649 1.20337 1.20987 1.19567 1.21509 0.78737 1.03108 0.96745 0.89926 0.88843 0.88723 0.88941 0.90950 0.91220 0.90032 0.90490 0.90685 0.96593 0.88205 0.94408 0.92436 0.90738 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 10.11 36.00 0.36 -0.93 16 2 C 0.51 6.41 7.79 -10.99 -0.09 6.33 16 3 O -0.54 -9.55 16.52 5.56 0.09 -9.46 16 4 N -0.61 -7.14 2.97 -172.76 -0.51 -7.65 16 5 C 0.10 0.75 6.31 -3.71 -0.02 0.73 16 6 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 7 C -0.10 -1.26 4.46 -26.69 -0.12 -1.38 16 8 C -0.10 -1.45 2.78 -91.65 -0.25 -1.70 16 9 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 10 C 0.46 9.53 7.23 36.00 0.26 9.79 16 11 O -0.52 -12.01 15.20 -18.75 -0.29 -12.30 16 12 O -0.35 -8.56 9.79 -39.26 -0.38 -8.95 16 13 C 0.21 5.87 2.56 -27.89 -0.07 5.80 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 16 C -0.52 -14.91 8.90 -34.44 -0.31 -15.22 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 20 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.12 1.79 5.65 -3.71 -0.02 1.77 16 25 H 0.08 0.37 5.14 -51.93 -0.27 0.10 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.44 5.14 -51.93 -0.27 0.17 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.97 8.07 -51.92 -0.42 0.55 16 33 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.11 1.93 7.00 -51.93 -0.36 1.57 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -33.97 319.25 -6.62 -40.59 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.77 Total: -0.53 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.17 Total: 1.95 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.11 Total: -32.64 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.58 Total: -30.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.97 -6.62 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.741 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds