Wall clock time and date at job start Mon Mar 30 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 119.99964 * 2 1 4 4 N 1.34776 * 120.00425 * 180.02562 * 2 1 3 5 5 C 1.46937 * 120.62599 * 354.41203 * 4 2 1 6 6 C 1.53187 * 108.77332 * 233.58506 * 5 4 2 7 7 C 1.53041 * 109.31554 * 305.36881 * 6 5 4 8 8 C 1.53034 * 109.54172 * 61.36591 * 7 6 5 9 9 H 1.09005 * 109.49631 * 58.58228 * 8 7 6 10 10 C 1.50691 * 109.50189 * 178.68423 * 8 7 6 11 11 O 1.20829 * 119.99904 * 359.83548 * 10 8 7 12 12 O 1.34229 * 120.00287 * 179.83566 * 10 8 7 13 13 C 1.45205 * 117.00036 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.46939 * 29.99926 * 13 12 10 15 15 C 1.52996 * 109.47059 * 270.00238 * 13 12 10 16 16 C 1.50699 * 109.46839 * 150.00135 * 13 12 10 17 17 H 1.07999 * 120.00531 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99756 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99671 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46682 * 90.00236 * 20 18 16 22 22 H 1.48496 * 109.47108 * 210.00276 * 20 18 16 23 23 H 1.48503 * 109.47221 * 330.00643 * 20 18 16 24 24 C 1.46922 * 120.63380 * 174.39012 * 4 2 1 25 25 H 1.09004 * 109.47470 * 184.87773 * 1 2 3 26 26 H 1.09003 * 109.47465 * 304.87845 * 1 2 3 27 27 H 1.09003 * 109.47714 * 64.88125 * 1 2 3 28 28 H 1.08997 * 109.58663 * 353.37666 * 5 4 2 29 29 H 1.08999 * 109.58276 * 113.79990 * 5 4 2 30 30 H 1.09007 * 109.49671 * 65.31769 * 6 5 4 31 31 H 1.09003 * 109.49888 * 185.38005 * 6 5 4 32 32 H 1.09007 * 109.45875 * 181.38828 * 7 6 5 33 33 H 1.09001 * 109.45664 * 301.35631 * 7 6 5 34 34 H 1.08997 * 109.47454 * 60.00123 * 15 13 12 35 35 H 1.09003 * 109.47086 * 180.02562 * 15 13 12 36 36 H 1.09004 * 109.47059 * 299.99567 * 15 13 12 37 37 H 0.97006 * 119.99795 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.58771 * 246.19861 * 24 4 2 39 39 H 1.08995 * 109.58568 * 6.62510 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4654 -2.4447 0.1220 6 6 2.0723 -3.2403 1.2819 7 6 3.5804 -3.3828 1.0637 8 6 4.2273 -1.9961 1.0386 9 1 4.0230 -1.4824 1.9781 10 6 5.7162 -2.1388 0.8560 11 8 6.2105 -3.2371 0.7590 12 8 6.4935 -1.0458 0.8011 13 6 7.9188 -1.2588 0.6230 14 1 8.0811 -2.1741 0.0539 15 6 8.5907 -1.3836 1.9919 16 6 8.5117 -0.0915 -0.1231 17 1 7.8807 0.7287 -0.4322 18 6 9.8602 -0.0699 -0.4103 19 7 10.6287 -1.0684 -0.0334 20 14 10.5951 1.3767 -1.3358 21 1 11.0381 2.4108 -0.3665 22 1 11.7594 0.9143 -2.1330 23 1 9.5719 1.9550 -2.2435 24 6 3.6448 -1.1863 -0.1241 25 1 -0.3634 -1.0240 0.0874 26 1 -0.3634 0.5877 0.8431 27 1 -0.3635 0.4362 -0.9305 28 1 0.4107 -2.2552 0.3212 29 1 1.5686 -3.0114 -0.8033 30 1 1.8884 -2.7148 2.2191 31 1 1.6152 -4.2290 1.3234 32 1 4.0109 -3.9697 1.8751 33 1 3.7639 -3.8861 0.1144 34 1 8.1618 -2.2279 2.5316 35 1 9.6607 -1.5430 1.8583 36 1 8.4284 -0.4682 2.5611 37 1 11.5773 -1.0535 -0.2357 38 1 3.9257 -1.6505 -1.0695 39 1 4.0279 -0.1665 -0.0873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:03 Heat of formation + Delta-G solvation = -152.459850 kcal Electronic energy + Delta-G solvation = -21212.806463 eV Core-core repulsion = 17926.347055 eV Total energy + Delta-G solvation = -3286.459408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80323 -40.83777 -38.50831 -37.50588 -35.38804 -34.28100 -32.73256 -31.63016 -30.38935 -27.50714 -26.37647 -25.60337 -23.64902 -22.32755 -21.06580 -20.01592 -18.91229 -18.49240 -18.17438 -17.38258 -17.21719 -16.65287 -16.38241 -16.14621 -15.44195 -15.05370 -14.93989 -14.47202 -14.27391 -14.21517 -13.89417 -13.71545 -13.31161 -13.16579 -12.98963 -12.96690 -12.84174 -12.56589 -12.44355 -12.19710 -12.02609 -11.82125 -11.70597 -11.62754 -11.40438 -11.03776 -10.80600 -10.63078 -9.76510 -8.32518 -6.49307 1.17722 1.38797 1.40890 1.52110 1.60604 1.82441 2.11088 2.39603 2.97854 3.48433 3.63129 3.69920 3.85180 3.99307 4.02624 4.15167 4.38902 4.49268 4.49977 4.61174 4.63808 4.71491 4.72917 4.78034 4.82056 4.86977 4.98622 5.09364 5.11641 5.22649 5.35506 5.41117 5.45410 5.58381 5.87157 6.04063 6.41701 6.54911 6.89488 7.14814 7.22447 8.75243 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.004809 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.822591 B = 5821.488320 C = 6733.817718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.500 3.500 3 O -0.604 6.604 4 N -0.609 5.609 5 C 0.093 3.907 6 C -0.124 4.124 7 C -0.102 4.102 8 C -0.083 4.083 9 H 0.114 0.886 10 C 0.451 3.549 11 O -0.544 6.544 12 O -0.365 6.365 13 C 0.216 3.784 14 H 0.011 0.989 15 C -0.142 4.142 16 C -0.551 4.551 17 H 0.062 0.938 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.269 1.269 24 C 0.126 3.874 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.034 -4.435 1.499 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.343 5.343 5 C -0.028 4.028 6 C -0.162 4.162 7 C -0.140 4.140 8 C -0.103 4.103 9 H 0.131 0.869 10 C 0.295 3.705 11 O -0.435 6.435 12 O -0.281 6.281 13 C 0.163 3.837 14 H 0.028 0.972 15 C -0.200 4.200 16 C -0.588 4.588 17 H 0.080 0.920 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.804 3.196 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.193 1.193 24 C 0.002 3.998 25 H 0.137 0.863 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.362 -4.268 1.457 22.812 hybrid contribution 1.428 0.467 -0.341 1.540 sum -20.934 -3.801 1.116 21.306 Atomic orbital electron populations 1.22067 0.87025 1.07086 1.06229 1.21919 0.92773 0.82144 0.73990 1.90738 1.72162 1.33277 1.52357 1.48337 1.05611 1.08075 1.72234 1.22367 0.98281 0.82287 0.99839 1.21960 0.92404 1.02802 0.99028 1.21479 0.96910 0.92081 1.03546 1.21472 0.85041 1.01519 1.02229 0.86851 1.24267 0.91752 0.82520 0.71929 1.90570 1.76969 1.28619 1.47322 1.86517 1.23669 1.36817 1.81140 1.20364 0.71631 0.97012 0.94676 0.97166 1.21985 1.03365 0.98382 0.96236 1.21275 0.94341 1.05453 1.37748 0.91980 1.25797 0.96469 0.99601 0.96203 1.70005 1.06439 1.32460 1.46372 0.85207 0.77803 0.78116 0.78443 1.19161 1.19809 1.19324 1.21175 0.81532 1.00723 0.96379 0.86333 0.87912 0.87675 0.84821 0.89669 0.90597 0.86607 0.91150 0.91340 0.95609 0.89853 0.93786 0.91866 0.91099 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.11 71.23 0.72 -1.06 16 2 C 0.50 11.92 7.79 87.65 0.68 12.60 16 3 O -0.60 -21.91 16.52 -3.04 -0.05 -21.96 16 4 N -0.61 -13.17 2.97 -818.89 -2.43 -15.61 16 5 C 0.09 1.02 6.31 86.36 0.54 1.56 16 6 C -0.12 -1.50 6.08 30.67 0.19 -1.31 16 7 C -0.10 -2.31 4.46 30.62 0.14 -2.17 16 8 C -0.08 -2.52 2.78 -11.46 -0.03 -2.55 16 9 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 10 C 0.45 19.56 7.23 71.23 0.52 20.07 16 11 O -0.54 -26.21 15.20 21.95 0.33 -25.87 16 12 O -0.37 -18.64 9.79 -51.41 -0.50 -19.14 16 13 C 0.22 12.39 2.56 29.85 0.08 12.46 16 14 H 0.01 0.67 7.16 -2.39 -0.02 0.65 16 15 C -0.14 -7.59 9.33 71.98 0.67 -6.92 16 16 C -0.55 -32.68 8.90 25.60 0.23 -32.46 16 17 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 18 C 0.02 1.09 5.30 84.66 0.45 1.54 16 19 N -0.91 -53.58 11.32 21.45 0.24 -53.34 16 20 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.13 3.81 5.65 86.37 0.49 4.30 16 25 H 0.12 0.36 5.14 -2.38 -0.01 0.35 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.13 0.42 5.14 -2.39 -0.01 0.40 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.69 8.07 -2.38 -0.02 1.67 16 33 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 34 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 4.73 6.07 -2.39 -0.01 4.71 16 36 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.07 2.77 7.00 -2.39 -0.02 2.76 16 Total: -1.00 -78.95 319.25 5.32 -73.62 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.04 Total: 9.78 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 4.67 Total: 6.07 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -2.19 Total: -68.94 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -0.22 Total: -66.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -78.95 5.32 -73.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.837 kcal (2) G-P(sol) polarization free energy of solvation -78.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds