Wall clock time and date at job start Mon Mar 30 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21274 * 120.00423 * 2 1 4 4 N 1.34783 * 119.99922 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62874 * 0.02562 * 4 2 1 6 6 C 1.53191 * 108.77343 * 126.37163 * 5 4 2 7 7 C 1.53039 * 109.31416 * 54.63452 * 6 5 4 8 8 C 1.53070 * 109.65812 * 298.69913 * 7 6 5 9 9 H 1.08997 * 109.38860 * 301.27396 * 8 7 6 10 10 C 1.50703 * 109.62238 * 181.16791 * 8 7 6 11 11 O 1.20829 * 119.99656 * 0.10829 * 10 8 7 12 12 O 1.34220 * 119.99767 * 180.10676 * 10 8 7 13 13 C 1.45208 * 116.99618 * 179.97438 * 12 10 8 14 14 H 1.08992 * 109.47298 * 330.00045 * 13 12 10 15 15 C 1.53002 * 109.47048 * 90.00309 * 13 12 10 16 16 C 1.50699 * 109.47108 * 209.99706 * 13 12 10 17 17 H 1.08008 * 120.00113 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00336 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99494 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00431 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47012 * 89.99948 * 20 18 16 22 22 H 1.48496 * 109.47109 * 210.00193 * 20 18 16 23 23 H 1.48504 * 109.47057 * 330.00047 * 20 18 16 24 24 C 1.46919 * 120.63144 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.47457 * 239.99632 * 1 2 3 26 26 H 1.09003 * 109.47041 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47385 * 119.99781 * 1 2 3 28 28 H 1.08998 * 109.58787 * 246.16207 * 5 4 2 29 29 H 1.09007 * 109.58600 * 6.44520 * 5 4 2 30 30 H 1.09002 * 109.49529 * 174.58688 * 6 5 4 31 31 H 1.09001 * 109.49774 * 294.68244 * 6 5 4 32 32 H 1.09007 * 109.45640 * 58.65727 * 7 6 5 33 33 H 1.09000 * 109.45893 * 178.62518 * 7 6 5 34 34 H 1.08993 * 109.47425 * 180.02562 * 15 13 12 35 35 H 1.09005 * 109.46666 * 300.00168 * 15 13 12 36 36 H 1.09006 * 109.47442 * 59.99723 * 15 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.58751 * 353.41659 * 24 4 2 39 39 H 1.08996 * 109.58750 * 113.69843 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4602 -2.4477 -0.0017 6 6 1.9684 -3.2984 -1.1699 7 6 3.4898 -3.4335 -1.0734 8 6 4.1366 -2.0493 -1.1668 9 1 3.8548 -1.5810 -2.1098 10 6 5.6360 -2.1858 -1.1005 11 8 6.1388 -3.2791 -0.9918 12 8 6.4127 -1.0929 -1.1623 13 6 7.8483 -1.2997 -1.0920 14 1 8.0588 -2.1868 -0.4948 15 6 8.4057 -1.4913 -2.5039 16 6 8.4981 -0.0989 -0.4542 17 1 7.8927 0.7360 -0.1333 18 6 9.8653 -0.0665 -0.2793 19 7 10.6024 -1.0833 -0.6695 20 14 10.6708 1.4217 0.5120 21 1 10.7369 1.2253 1.9825 22 1 12.0443 1.5865 -0.0277 23 1 9.8713 2.6362 0.2102 24 6 3.6500 -1.1835 -0.0011 25 1 -0.3634 -0.5139 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6423 -2.9703 0.9374 29 1 0.3917 -2.2655 -0.1172 30 1 1.5118 -4.2872 -1.1255 31 1 1.7049 -2.8174 -2.1119 32 1 3.7539 -3.8921 -0.1205 33 1 3.8513 -4.0587 -1.8898 34 1 9.4831 -1.6470 -2.4512 35 1 7.9356 -2.3598 -2.9653 36 1 8.1951 -0.6041 -3.1012 37 1 11.5644 -1.0604 -0.5468 38 1 4.0266 -0.1674 -0.1188 39 1 4.0112 -1.6004 0.9390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:05 Heat of formation + Delta-G solvation = -136.482078 kcal Electronic energy + Delta-G solvation = -21209.203108 eV Core-core repulsion = 17923.436548 eV Total energy + Delta-G solvation = -3285.766560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47499 -39.40103 -37.31665 -35.69752 -33.32103 -33.09678 -31.73815 -29.87148 -29.33618 -25.43363 -25.28329 -24.32602 -22.25987 -20.84983 -19.41198 -19.11831 -17.34801 -16.76030 -16.57318 -16.14369 -15.65253 -15.27979 -14.99786 -14.52593 -14.31898 -13.92140 -13.38764 -13.37168 -13.16362 -12.84453 -12.54511 -12.29826 -12.11936 -11.96764 -11.49908 -11.25524 -11.13480 -11.05752 -11.00399 -10.82564 -10.67732 -10.34525 -10.26316 -9.94894 -9.60276 -9.52100 -8.89089 -8.78103 -8.47266 -6.16543 -4.23081 2.52362 2.74634 3.04224 3.27288 3.32559 3.37291 3.63913 4.34987 4.38943 4.61196 4.70940 4.72517 4.90735 5.00429 5.12936 5.14694 5.16706 5.21740 5.36391 5.52680 5.63706 5.65011 5.77454 5.79612 5.91792 6.12962 6.22263 6.34471 6.64408 6.89053 6.91885 7.16879 7.28550 7.61649 7.73303 7.94134 8.08242 8.15497 8.63221 8.90005 9.42453 10.90938 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.004809 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.099341 B = 5821.115491 C = 6735.801055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.539 6.539 4 N -0.614 5.614 5 C 0.104 3.896 6 C -0.134 4.134 7 C -0.105 4.105 8 C -0.096 4.096 9 H 0.105 0.895 10 C 0.459 3.541 11 O -0.518 6.518 12 O -0.353 6.353 13 C 0.215 3.785 14 H 0.047 0.953 15 C -0.155 4.155 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.911 3.089 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.121 3.879 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.015 0.985 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.472 -4.144 0.012 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.416 6.416 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.172 4.172 7 C -0.142 4.142 8 C -0.116 4.116 9 H 0.123 0.877 10 C 0.300 3.700 11 O -0.408 6.408 12 O -0.269 6.269 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.212 4.212 16 C -0.558 4.558 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.738 3.262 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.001 4.001 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.753 -3.917 0.043 20.137 hybrid contribution 0.653 0.428 0.283 0.830 sum -19.100 -3.490 0.325 19.419 Atomic orbital electron populations 1.21935 0.91860 1.05383 1.03959 1.20826 0.90576 0.83053 0.75732 1.90762 1.70638 1.30931 1.49243 1.48169 1.06805 1.06122 1.73727 1.21829 0.96630 0.84156 0.99295 1.21940 0.96131 1.00378 0.98734 1.21414 0.93773 0.94897 1.04166 1.21343 0.89673 0.98675 1.01905 0.87737 1.23052 0.90022 0.83676 0.73213 1.90597 1.76042 1.28241 1.45936 1.86511 1.24229 1.35149 1.80964 1.20654 0.69415 0.98861 0.94843 0.93568 1.22162 1.04647 0.97588 0.96840 1.21044 0.91993 1.02766 1.39991 0.91229 1.24882 0.96675 0.96950 0.95440 1.69904 1.06136 1.30296 1.46494 0.86275 0.78402 0.82187 0.79319 1.20397 1.20959 1.19517 1.21480 0.78909 1.02683 0.97037 0.89473 0.89039 0.89432 0.90968 0.89433 0.90037 0.91225 0.90693 0.90489 0.88212 0.96601 0.94392 0.92436 0.87215 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.67 36.00 0.31 -0.92 16 2 C 0.51 6.39 7.81 -10.98 -0.09 6.30 16 3 O -0.54 -9.52 16.50 5.56 0.09 -9.43 16 4 N -0.61 -7.12 2.98 -172.80 -0.51 -7.63 16 5 C 0.10 0.79 6.34 -3.71 -0.02 0.76 16 6 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 7 C -0.10 -1.25 4.47 -26.67 -0.12 -1.37 16 8 C -0.10 -1.44 2.78 -91.66 -0.25 -1.69 16 9 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 10 C 0.46 9.51 7.23 36.01 0.26 9.77 16 11 O -0.52 -11.99 15.21 -18.75 -0.29 -12.28 16 12 O -0.35 -8.54 9.79 -39.23 -0.38 -8.93 16 13 C 0.21 5.86 2.56 -27.88 -0.07 5.79 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -4.00 9.33 37.16 0.35 -3.65 16 16 C -0.52 -14.91 8.90 -34.44 -0.31 -15.21 16 17 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 20 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.12 1.79 5.64 -3.74 -0.02 1.77 16 25 H 0.09 0.44 7.94 -51.93 -0.41 0.03 16 26 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 27 H 0.09 0.45 7.69 -51.93 -0.40 0.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.41 5.93 -51.92 -0.31 0.11 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 33 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 1.93 7.00 -51.93 -0.36 1.56 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -33.93 320.99 -6.80 -40.73 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.94 Total: -0.82 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.22 Total: 1.98 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.11 Total: -32.62 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.58 Total: -30.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.93 -6.80 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.749 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds