Wall clock time and date at job start Mon Mar 30 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21274 * 120.00423 * 2 1 4 4 N 1.34783 * 119.99922 * 180.02562 * 2 1 3 5 5 C 1.46928 * 120.62874 * 0.02562 * 4 2 1 6 6 C 1.53191 * 108.77343 * 126.37163 * 5 4 2 7 7 C 1.53039 * 109.31416 * 54.63452 * 6 5 4 8 8 C 1.53070 * 109.65812 * 298.69913 * 7 6 5 9 9 H 1.08997 * 109.38860 * 301.27396 * 8 7 6 10 10 C 1.50703 * 109.62238 * 181.16791 * 8 7 6 11 11 O 1.20829 * 119.99656 * 0.10829 * 10 8 7 12 12 O 1.34220 * 119.99767 * 180.10676 * 10 8 7 13 13 C 1.45208 * 116.99618 * 179.97438 * 12 10 8 14 14 H 1.08992 * 109.47298 * 330.00045 * 13 12 10 15 15 C 1.53002 * 109.47048 * 90.00309 * 13 12 10 16 16 C 1.50699 * 109.47108 * 209.99706 * 13 12 10 17 17 H 1.08008 * 120.00113 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00336 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99494 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00431 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47012 * 89.99948 * 20 18 16 22 22 H 1.48496 * 109.47109 * 210.00193 * 20 18 16 23 23 H 1.48504 * 109.47057 * 330.00047 * 20 18 16 24 24 C 1.46919 * 120.63144 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.47457 * 239.99632 * 1 2 3 26 26 H 1.09003 * 109.47041 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47385 * 119.99781 * 1 2 3 28 28 H 1.08998 * 109.58787 * 246.16207 * 5 4 2 29 29 H 1.09007 * 109.58600 * 6.44520 * 5 4 2 30 30 H 1.09002 * 109.49529 * 174.58688 * 6 5 4 31 31 H 1.09001 * 109.49774 * 294.68244 * 6 5 4 32 32 H 1.09007 * 109.45640 * 58.65727 * 7 6 5 33 33 H 1.09000 * 109.45893 * 178.62518 * 7 6 5 34 34 H 1.08993 * 109.47425 * 180.02562 * 15 13 12 35 35 H 1.09005 * 109.46666 * 300.00168 * 15 13 12 36 36 H 1.09006 * 109.47442 * 59.99723 * 15 13 12 37 37 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.58751 * 353.41659 * 24 4 2 39 39 H 1.08996 * 109.58750 * 113.69843 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4602 -2.4477 -0.0017 6 6 1.9684 -3.2984 -1.1699 7 6 3.4898 -3.4335 -1.0734 8 6 4.1366 -2.0493 -1.1668 9 1 3.8548 -1.5810 -2.1098 10 6 5.6360 -2.1858 -1.1005 11 8 6.1388 -3.2791 -0.9918 12 8 6.4127 -1.0929 -1.1623 13 6 7.8483 -1.2997 -1.0920 14 1 8.0588 -2.1868 -0.4948 15 6 8.4057 -1.4913 -2.5039 16 6 8.4981 -0.0989 -0.4542 17 1 7.8927 0.7360 -0.1333 18 6 9.8653 -0.0665 -0.2793 19 7 10.6024 -1.0833 -0.6695 20 14 10.6708 1.4217 0.5120 21 1 10.7369 1.2253 1.9825 22 1 12.0443 1.5865 -0.0277 23 1 9.8713 2.6362 0.2102 24 6 3.6500 -1.1835 -0.0011 25 1 -0.3634 -0.5139 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6423 -2.9703 0.9374 29 1 0.3917 -2.2655 -0.1172 30 1 1.5118 -4.2872 -1.1255 31 1 1.7049 -2.8174 -2.1119 32 1 3.7539 -3.8921 -0.1205 33 1 3.8513 -4.0587 -1.8898 34 1 9.4831 -1.6470 -2.4512 35 1 7.9356 -2.3598 -2.9653 36 1 8.1951 -0.6041 -3.1012 37 1 11.5644 -1.0604 -0.5468 38 1 4.0266 -0.1674 -0.1188 39 1 4.0112 -1.6004 0.9390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:05 Heat of formation + Delta-G solvation = -158.545968 kcal Electronic energy + Delta-G solvation = -21210.159870 eV Core-core repulsion = 17923.436548 eV Total energy + Delta-G solvation = -3286.723322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79427 -40.82306 -38.50771 -37.50409 -35.38778 -34.24353 -32.71327 -31.61915 -30.40624 -27.50694 -26.33741 -25.60951 -23.63961 -22.32220 -21.06618 -20.03907 -18.91416 -18.49023 -18.08120 -17.37481 -17.19725 -16.63917 -16.37348 -16.14798 -15.43205 -15.02559 -14.93867 -14.45793 -14.23666 -14.15964 -13.88924 -13.64789 -13.32358 -13.17916 -13.02169 -12.98382 -12.87427 -12.56234 -12.42649 -12.19168 -12.02801 -11.93965 -11.69190 -11.63593 -11.40472 -11.03187 -10.85438 -10.63470 -9.76471 -8.32587 -6.49336 1.17523 1.38683 1.40558 1.52433 1.62328 1.82962 2.11205 2.39590 2.97849 3.48946 3.64125 3.70527 3.84447 4.00615 4.10706 4.16244 4.42971 4.49290 4.52911 4.60017 4.65266 4.71315 4.72943 4.76918 4.79475 4.87052 4.99582 5.09801 5.11879 5.19067 5.35950 5.41966 5.45689 5.58433 5.87195 6.04045 6.42160 6.54881 6.89487 7.15618 7.22430 8.75201 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023502 B = 0.004809 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.099341 B = 5821.115491 C = 6735.801055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.499 3.501 3 O -0.604 6.604 4 N -0.610 5.610 5 C 0.097 3.903 6 C -0.124 4.124 7 C -0.103 4.103 8 C -0.082 4.082 9 H 0.115 0.885 10 C 0.451 3.549 11 O -0.544 6.544 12 O -0.365 6.365 13 C 0.216 3.784 14 H 0.010 0.990 15 C -0.142 4.142 16 C -0.551 4.551 17 H 0.062 0.938 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.981 3.019 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.267 1.267 24 C 0.126 3.874 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.043 0.957 37 H 0.272 0.728 38 H 0.073 0.927 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.121 -4.535 0.118 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.291 3.709 3 O -0.486 6.486 4 N -0.343 5.343 5 C -0.023 4.023 6 C -0.161 4.161 7 C -0.140 4.140 8 C -0.102 4.102 9 H 0.133 0.867 10 C 0.295 3.705 11 O -0.435 6.435 12 O -0.281 6.281 13 C 0.163 3.837 14 H 0.028 0.972 15 C -0.199 4.199 16 C -0.588 4.588 17 H 0.080 0.920 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.804 3.196 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.191 1.191 24 C 0.002 3.998 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.447 -4.362 0.142 22.867 hybrid contribution 1.454 0.456 0.256 1.545 sum -20.994 -3.906 0.398 21.358 Atomic orbital electron populations 1.21973 0.86890 1.06242 1.06827 1.21950 0.92820 0.82071 0.74060 1.90737 1.72300 1.33285 1.52242 1.48304 1.05130 1.07920 1.72921 1.22236 0.98419 0.81944 0.99743 1.21950 0.92420 1.02471 0.99295 1.21484 0.96882 0.92130 1.03534 1.21454 0.85054 1.01277 1.02434 0.86717 1.24263 0.92053 0.82436 0.71712 1.90571 1.77017 1.28929 1.46980 1.86515 1.23011 1.36971 1.81635 1.20365 0.71374 0.97051 0.94897 0.97195 1.21982 1.03464 0.98237 0.96255 1.21275 0.92899 1.03105 1.41536 0.91987 1.25793 0.96860 0.99979 0.95434 1.70006 1.06675 1.31971 1.46622 0.85210 0.77623 0.78250 0.78510 1.19575 1.19596 1.19123 1.21137 0.81812 1.00303 0.96556 0.86420 0.89432 0.86258 0.89901 0.85142 0.86679 0.90408 0.91472 0.91114 0.89876 0.95599 0.93745 0.91866 0.90877 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.67 71.24 0.62 -1.07 16 2 C 0.50 11.84 7.81 87.66 0.68 12.53 16 3 O -0.60 -21.96 16.50 -3.01 -0.05 -22.00 16 4 N -0.61 -13.10 2.98 -819.01 -2.44 -15.54 16 5 C 0.10 1.06 6.34 86.36 0.55 1.61 16 6 C -0.12 -1.45 6.08 30.67 0.19 -1.27 16 7 C -0.10 -2.29 4.47 30.63 0.14 -2.16 16 8 C -0.08 -2.49 2.78 -11.47 -0.03 -2.52 16 9 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 10 C 0.45 19.51 7.23 71.24 0.52 20.03 16 11 O -0.54 -26.19 15.21 21.96 0.33 -25.86 16 12 O -0.37 -18.60 9.79 -51.32 -0.50 -19.10 16 13 C 0.22 12.38 2.56 29.85 0.08 12.45 16 14 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 15 C -0.14 -7.56 9.33 71.98 0.67 -6.89 16 16 C -0.55 -32.69 8.90 25.60 0.23 -32.46 16 17 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 18 C 0.02 1.09 5.30 84.65 0.45 1.54 16 19 N -0.91 -53.58 11.32 21.45 0.24 -53.34 16 20 Si 0.98 44.45 29.54 68.60 2.03 46.48 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.13 3.82 5.64 86.35 0.49 4.30 16 25 H 0.12 0.57 7.94 -2.39 -0.02 0.55 16 26 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.12 0.55 7.69 -2.39 -0.02 0.53 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.13 0.39 5.93 -2.38 -0.01 0.38 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.61 8.13 -2.38 -0.02 1.59 16 33 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 34 H 0.08 4.71 6.07 -2.39 -0.01 4.70 16 35 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 38 H 0.07 2.76 7.00 -2.39 -0.02 2.74 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -79.16 320.99 5.22 -73.94 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.32 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 4.57 Total: 6.10 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -2.19 Total: -68.88 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -0.22 Total: -66.96 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -79.16 5.22 -73.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.604 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds