Wall clock time and date at job start Mon Mar 30 2020 04:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3 5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1 6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1 7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2 8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2 9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4 10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4 11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4 12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3 13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1 14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2 16 16 C 1.53011 * 109.46570 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46552 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.46825 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00156 * 179.97438 * 18 17 16 20 20 O 1.21287 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00179 * 179.97438 * 19 18 17 22 22 C 1.52996 * 117.50095 * 248.62275 * 21 19 18 23 23 C 1.53003 * 117.49669 * 179.97438 * 21 19 18 24 24 H 1.08999 * 109.47350 * 173.55599 * 1 2 3 25 25 H 1.09002 * 109.47000 * 293.56035 * 1 2 3 26 26 H 1.09003 * 109.47267 * 53.55672 * 1 2 3 27 27 H 0.96995 * 119.99950 * 355.18999 * 7 6 4 28 28 H 1.09001 * 109.46960 * 299.99017 * 15 13 12 29 29 H 1.08993 * 109.47469 * 59.99580 * 15 13 12 30 30 H 1.09001 * 109.47072 * 299.99433 * 16 15 13 31 31 H 1.08993 * 109.47172 * 59.99883 * 16 15 13 32 32 H 1.09001 * 109.47067 * 299.99556 * 17 16 15 33 33 H 1.08993 * 109.47380 * 60.00130 * 17 16 15 34 34 H 0.97001 * 119.99948 * 0.02562 * 18 17 16 35 35 H 1.08998 * 115.55006 * 34.33742 * 21 19 18 36 36 H 1.09000 * 117.49979 * 0.02562 * 22 21 19 37 37 H 1.08999 * 117.49832 * 145.02471 * 22 21 19 38 38 H 1.09000 * 117.49957 * 214.97748 * 23 21 19 39 39 H 1.08989 * 117.50219 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5778 -1.6375 1.1338 6 6 1.7957 -0.1767 2.4795 7 7 1.9545 -0.9199 3.5529 8 14 1.2421 1.5995 2.6466 9 1 2.4318 2.4788 2.7761 10 1 0.4656 1.9913 1.4431 11 1 0.3887 1.7405 3.8538 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9974 1.2518 -2.2506 15 6 2.7181 -0.5772 -3.5496 16 6 2.8623 0.4890 -4.6375 17 6 3.3716 -0.1620 -5.9251 18 7 3.5090 0.8587 -6.9670 19 6 3.9461 0.5141 -8.1944 20 8 4.2252 -0.6411 -8.4367 21 6 4.0870 1.5640 -9.2664 22 6 3.1204 1.4988 -10.4505 23 6 4.5886 1.1096 -10.6386 24 1 -0.3634 -1.0211 -0.1153 25 1 -0.3633 0.4108 0.9420 26 1 -0.3634 0.6105 -0.8267 27 1 2.1699 -1.8614 3.4634 28 1 3.6870 -1.0408 -3.3641 29 1 2.0086 -1.3369 -3.8775 30 1 1.8932 0.9523 -4.8229 31 1 3.5716 1.2489 -4.3098 32 1 4.3407 -0.6250 -5.7394 33 1 2.6626 -0.9221 -6.2530 34 1 3.2862 1.7827 -6.7732 35 1 4.3936 2.5510 -8.9203 36 1 2.3822 0.6968 -10.4540 37 1 2.7906 2.4431 -10.8836 38 1 5.2243 1.7981 -11.1953 39 1 4.8171 0.0516 -10.7659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:57 Heat of formation + Delta-G solvation = -118.166184 kcal Electronic energy + Delta-G solvation = -19721.034176 eV Core-core repulsion = 16436.061853 eV Total energy + Delta-G solvation = -3284.972323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23233 -39.76081 -36.91826 -36.18630 -35.44535 -33.31243 -32.82918 -30.47621 -27.81213 -25.00858 -24.49103 -22.84116 -22.40234 -21.23615 -20.25701 -19.54283 -17.79711 -17.75413 -17.00447 -16.34094 -16.25802 -15.59839 -15.36946 -15.09577 -14.38678 -14.20361 -13.78440 -13.05491 -12.95213 -12.86309 -12.76489 -12.30389 -12.12145 -11.95571 -11.80066 -11.63439 -11.38832 -11.08472 -11.02851 -10.90876 -10.67012 -10.18591 -10.16248 -10.00712 -9.77634 -9.65994 -9.35313 -8.90920 -8.45474 -6.65544 -4.27481 2.20135 2.77254 2.79360 3.33248 3.36847 3.45735 3.49207 3.54351 4.30080 4.36078 4.39943 4.47687 4.69419 4.79995 4.82559 4.85153 5.09378 5.18568 5.33374 5.35164 5.37066 5.52597 5.55688 5.64397 5.72374 5.90676 6.00112 6.15193 6.18941 6.40887 6.45623 6.66845 7.10542 7.20261 7.35844 7.78984 7.94026 8.22271 8.44420 8.81128 9.40318 10.76153 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051211 B = 0.002696 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.621654 B =10381.524318 C =10609.471844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.195 3.805 3 H 0.040 0.960 4 C -0.608 4.608 5 H 0.069 0.931 6 C 0.040 3.960 7 N -0.894 5.894 8 Si 1.036 2.964 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.280 1.280 12 O -0.346 6.346 13 C 0.451 3.549 14 O -0.526 6.526 15 C -0.113 4.113 16 C -0.120 4.120 17 C 0.118 3.882 18 N -0.725 5.725 19 C 0.541 3.459 20 O -0.542 6.542 21 C -0.197 4.197 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 5.893 -24.525 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.645 4.645 5 H 0.087 0.913 6 C -0.166 4.166 7 N -0.527 5.527 8 Si 0.863 3.137 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.205 1.205 12 O -0.261 6.261 13 C 0.294 3.706 14 O -0.417 6.417 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.005 4.005 18 N -0.376 5.376 19 C 0.327 3.673 20 O -0.419 6.419 21 C -0.218 4.218 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.238 0.762 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.678 6.539 -23.478 24.429 hybrid contribution 0.240 -0.639 -0.767 1.027 sum 1.918 5.900 -24.245 25.026 Atomic orbital electron populations 1.22510 0.98121 1.00796 1.00606 1.20933 0.90882 0.94067 0.80037 0.94279 1.21943 1.41283 1.11677 0.89607 0.91329 1.25686 0.94172 1.05547 0.91239 1.70809 1.43058 1.08537 1.30313 0.84217 0.77738 0.75274 0.76490 1.20732 1.19416 1.20528 1.86547 1.75566 1.43067 1.20921 1.23416 0.74771 0.86031 0.86340 1.90585 1.49159 1.17021 1.84900 1.21194 1.04238 0.99277 0.90416 1.21578 1.03361 0.98237 0.92586 1.21391 1.01931 0.90780 0.86417 1.45923 1.67805 1.12540 1.11377 1.19676 0.76289 0.88764 0.82535 1.90708 1.49844 1.20245 1.81122 1.22210 1.09263 1.00246 0.90052 1.22954 0.93626 1.03870 0.98584 1.22964 0.96702 1.03489 0.95404 0.92746 0.91478 0.95060 0.91751 0.87704 0.87833 0.90259 0.90182 0.91010 0.91104 0.76198 0.85765 0.88209 0.87708 0.87874 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.83 37.16 0.33 -3.38 16 2 C 0.19 4.91 2.11 -27.89 -0.06 4.85 16 3 H 0.04 1.02 5.79 -51.93 -0.30 0.72 16 4 C -0.61 -17.37 9.18 -34.44 -0.32 -17.68 16 5 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16 6 C 0.04 1.14 5.33 -17.82 -0.09 1.04 16 7 N -0.89 -26.96 13.70 55.43 0.76 -26.20 16 8 Si 1.04 24.80 26.17 -169.99 -4.45 20.35 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.27 -6.01 5.53 56.52 0.31 -5.70 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 O -0.35 -7.86 9.86 -39.25 -0.39 -8.24 16 13 C 0.45 8.52 7.93 36.01 0.29 8.81 16 14 O -0.53 -11.07 15.20 -18.75 -0.29 -11.36 16 15 C -0.11 -1.42 5.81 -27.88 -0.16 -1.58 16 16 C -0.12 -1.26 4.62 -26.73 -0.12 -1.38 16 17 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16 18 N -0.73 -6.43 5.56 -60.29 -0.33 -6.77 16 19 C 0.54 5.68 7.61 -10.99 -0.08 5.60 16 20 O -0.54 -7.82 16.26 5.55 0.09 -7.73 16 21 C -0.20 -1.43 6.19 -91.77 -0.57 -2.00 16 22 C -0.15 -0.94 10.24 -26.71 -0.27 -1.21 16 23 C -0.15 -1.01 10.05 -26.70 -0.27 -1.28 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.52 5.06 -51.93 -0.26 1.26 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.40 2.62 8.47 -40.82 -0.35 2.28 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.92 7.67 -51.94 -0.40 0.52 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -34.31 331.44 -7.01 -41.32 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.04 Total: 0.74 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.36 Total: -7.10 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.42 Total: -32.97 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.58 Total: -27.33 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.45 Total: 20.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.31 -7.01 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.850 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds