Wall clock time and date at job start Mon Mar 30 2020 04:35:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47124 * 2 1
4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3
5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1
6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1
7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2
8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2
9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4
10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4
11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4
12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3
13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1
14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2
15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2
16 16 C 1.53011 * 109.46570 * 179.97438 * 15 13 12
17 17 C 1.52999 * 109.46552 * 179.97438 * 16 15 13
18 18 N 1.46504 * 109.46825 * 179.97438 * 17 16 15
19 19 C 1.34774 * 120.00156 * 179.97438 * 18 17 16
20 20 O 1.21287 * 120.00162 * 0.02562 * 19 18 17
21 21 C 1.50700 * 120.00179 * 179.97438 * 19 18 17
22 22 C 1.52996 * 117.50095 * 248.62275 * 21 19 18
23 23 C 1.53003 * 117.49669 * 179.97438 * 21 19 18
24 24 H 1.08999 * 109.47350 * 173.55599 * 1 2 3
25 25 H 1.09002 * 109.47000 * 293.56035 * 1 2 3
26 26 H 1.09003 * 109.47267 * 53.55672 * 1 2 3
27 27 H 0.96995 * 119.99950 * 355.18999 * 7 6 4
28 28 H 1.09001 * 109.46960 * 299.99017 * 15 13 12
29 29 H 1.08993 * 109.47469 * 59.99580 * 15 13 12
30 30 H 1.09001 * 109.47072 * 299.99433 * 16 15 13
31 31 H 1.08993 * 109.47172 * 59.99883 * 16 15 13
32 32 H 1.09001 * 109.47067 * 299.99556 * 17 16 15
33 33 H 1.08993 * 109.47380 * 60.00130 * 17 16 15
34 34 H 0.97001 * 119.99948 * 0.02562 * 18 17 16
35 35 H 1.08998 * 115.55006 * 34.33742 * 21 19 18
36 36 H 1.09000 * 117.49979 * 0.02562 * 22 21 19
37 37 H 1.08999 * 117.49832 * 145.02471 * 22 21 19
38 38 H 1.09000 * 117.49957 * 214.97748 * 23 21 19
39 39 H 1.08989 * 117.50219 * 359.97438 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2303
5 1 2.5778 -1.6375 1.1338
6 6 1.7957 -0.1767 2.4795
7 7 1.9545 -0.9199 3.5529
8 14 1.2421 1.5995 2.6466
9 1 2.4318 2.4788 2.7761
10 1 0.4656 1.9913 1.4431
11 1 0.3887 1.7405 3.8538
12 8 2.0139 -0.6845 -1.1856
13 6 2.2171 0.0641 -2.2812
14 8 1.9974 1.2518 -2.2506
15 6 2.7181 -0.5772 -3.5496
16 6 2.8623 0.4890 -4.6375
17 6 3.3716 -0.1620 -5.9251
18 7 3.5090 0.8587 -6.9670
19 6 3.9461 0.5141 -8.1944
20 8 4.2252 -0.6411 -8.4367
21 6 4.0870 1.5640 -9.2664
22 6 3.1204 1.4988 -10.4505
23 6 4.5886 1.1096 -10.6386
24 1 -0.3634 -1.0211 -0.1153
25 1 -0.3633 0.4108 0.9420
26 1 -0.3634 0.6105 -0.8267
27 1 2.1699 -1.8614 3.4634
28 1 3.6870 -1.0408 -3.3641
29 1 2.0086 -1.3369 -3.8775
30 1 1.8932 0.9523 -4.8229
31 1 3.5716 1.2489 -4.3098
32 1 4.3407 -0.6250 -5.7394
33 1 2.6626 -0.9221 -6.2530
34 1 3.2862 1.7827 -6.7732
35 1 4.3936 2.5510 -8.9203
36 1 2.3822 0.6968 -10.4540
37 1 2.7906 2.4431 -10.8836
38 1 5.2243 1.7981 -11.1953
39 1 4.8171 0.0516 -10.7659
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000113693601.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:57
Heat of formation + Delta-G solvation = -118.166184 kcal
Electronic energy + Delta-G solvation = -19721.034176 eV
Core-core repulsion = 16436.061853 eV
Total energy + Delta-G solvation = -3284.972323 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.23233 -39.76081 -36.91826 -36.18630 -35.44535 -33.31243 -32.82918 -30.47621
-27.81213 -25.00858 -24.49103 -22.84116 -22.40234 -21.23615 -20.25701 -19.54283
-17.79711 -17.75413 -17.00447 -16.34094 -16.25802 -15.59839 -15.36946 -15.09577
-14.38678 -14.20361 -13.78440 -13.05491 -12.95213 -12.86309 -12.76489 -12.30389
-12.12145 -11.95571 -11.80066 -11.63439 -11.38832 -11.08472 -11.02851 -10.90876
-10.67012 -10.18591 -10.16248 -10.00712 -9.77634 -9.65994 -9.35313 -8.90920
-8.45474 -6.65544 -4.27481 2.20135 2.77254 2.79360 3.33248 3.36847
3.45735 3.49207 3.54351 4.30080 4.36078 4.39943 4.47687 4.69419
4.79995 4.82559 4.85153 5.09378 5.18568 5.33374 5.35164 5.37066
5.52597 5.55688 5.64397 5.72374 5.90676 6.00112 6.15193 6.18941
6.40887 6.45623 6.66845 7.10542 7.20261 7.35844 7.78984 7.94026
8.22271 8.44420 8.81128 9.40318 10.76153
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.051211 B = 0.002696 C = 0.002639
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 546.621654 B =10381.524318 C =10609.471844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.195 3.805
3 H 0.040 0.960
4 C -0.608 4.608
5 H 0.069 0.931
6 C 0.040 3.960
7 N -0.894 5.894
8 Si 1.036 2.964
9 H -0.281 1.281
10 H -0.269 1.269
11 H -0.280 1.280
12 O -0.346 6.346
13 C 0.451 3.549
14 O -0.526 6.526
15 C -0.113 4.113
16 C -0.120 4.120
17 C 0.118 3.882
18 N -0.725 5.725
19 C 0.541 3.459
20 O -0.542 6.542
21 C -0.197 4.197
22 C -0.153 4.153
23 C -0.148 4.148
24 H 0.053 0.947
25 H 0.066 0.934
26 H 0.030 0.970
27 H 0.272 0.728
28 H 0.105 0.895
29 H 0.103 0.897
30 H 0.079 0.921
31 H 0.080 0.920
32 H 0.072 0.928
33 H 0.071 0.929
34 H 0.404 0.596
35 H 0.124 0.876
36 H 0.099 0.901
37 H 0.105 0.895
38 H 0.103 0.897
39 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.921 5.893 -24.525 25.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.141 3.859
3 H 0.057 0.943
4 C -0.645 4.645
5 H 0.087 0.913
6 C -0.166 4.166
7 N -0.527 5.527
8 Si 0.863 3.137
9 H -0.207 1.207
10 H -0.194 1.194
11 H -0.205 1.205
12 O -0.261 6.261
13 C 0.294 3.706
14 O -0.417 6.417
15 C -0.151 4.151
16 C -0.158 4.158
17 C -0.005 4.005
18 N -0.376 5.376
19 C 0.327 3.673
20 O -0.419 6.419
21 C -0.218 4.218
22 C -0.190 4.190
23 C -0.186 4.186
24 H 0.073 0.927
25 H 0.085 0.915
26 H 0.049 0.951
27 H 0.082 0.918
28 H 0.123 0.877
29 H 0.122 0.878
30 H 0.097 0.903
31 H 0.098 0.902
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.238 0.762
35 H 0.142 0.858
36 H 0.118 0.882
37 H 0.123 0.877
38 H 0.121 0.879
39 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 1.678 6.539 -23.478 24.429
hybrid contribution 0.240 -0.639 -0.767 1.027
sum 1.918 5.900 -24.245 25.026
Atomic orbital electron populations
1.22510 0.98121 1.00796 1.00606 1.20933 0.90882 0.94067 0.80037
0.94279 1.21943 1.41283 1.11677 0.89607 0.91329 1.25686 0.94172
1.05547 0.91239 1.70809 1.43058 1.08537 1.30313 0.84217 0.77738
0.75274 0.76490 1.20732 1.19416 1.20528 1.86547 1.75566 1.43067
1.20921 1.23416 0.74771 0.86031 0.86340 1.90585 1.49159 1.17021
1.84900 1.21194 1.04238 0.99277 0.90416 1.21578 1.03361 0.98237
0.92586 1.21391 1.01931 0.90780 0.86417 1.45923 1.67805 1.12540
1.11377 1.19676 0.76289 0.88764 0.82535 1.90708 1.49844 1.20245
1.81122 1.22210 1.09263 1.00246 0.90052 1.22954 0.93626 1.03870
0.98584 1.22964 0.96702 1.03489 0.95404 0.92746 0.91478 0.95060
0.91751 0.87704 0.87833 0.90259 0.90182 0.91010 0.91104 0.76198
0.85765 0.88209 0.87708 0.87874 0.87370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.71 8.83 37.16 0.33 -3.38 16
2 C 0.19 4.91 2.11 -27.89 -0.06 4.85 16
3 H 0.04 1.02 5.79 -51.93 -0.30 0.72 16
4 C -0.61 -17.37 9.18 -34.44 -0.32 -17.68 16
5 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16
6 C 0.04 1.14 5.33 -17.82 -0.09 1.04 16
7 N -0.89 -26.96 13.70 55.43 0.76 -26.20 16
8 Si 1.04 24.80 26.17 -169.99 -4.45 20.35 16
9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
10 H -0.27 -6.01 5.53 56.52 0.31 -5.70 16
11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
12 O -0.35 -7.86 9.86 -39.25 -0.39 -8.24 16
13 C 0.45 8.52 7.93 36.01 0.29 8.81 16
14 O -0.53 -11.07 15.20 -18.75 -0.29 -11.36 16
15 C -0.11 -1.42 5.81 -27.88 -0.16 -1.58 16
16 C -0.12 -1.26 4.62 -26.73 -0.12 -1.38 16
17 C 0.12 1.14 5.67 -4.04 -0.02 1.12 16
18 N -0.73 -6.43 5.56 -60.29 -0.33 -6.77 16
19 C 0.54 5.68 7.61 -10.99 -0.08 5.60 16
20 O -0.54 -7.82 16.26 5.55 0.09 -7.73 16
21 C -0.20 -1.43 6.19 -91.77 -0.57 -2.00 16
22 C -0.15 -0.94 10.24 -26.71 -0.27 -1.21 16
23 C -0.15 -1.01 10.05 -26.70 -0.27 -1.28 16
24 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16
25 H 0.07 1.52 5.06 -51.93 -0.26 1.26 16
26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
27 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16
28 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16
31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
34 H 0.40 2.62 8.47 -40.82 -0.35 2.28 16
35 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16
36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.11 0.92 7.67 -51.94 -0.40 0.52 16
LS Contribution 331.44 15.07 4.99 4.99
Total: -1.00 -34.31 331.44 -7.01 -41.32
By element:
Atomic # 1 Polarization: 6.78 SS G_CDS: -6.04 Total: 0.74 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: -1.36 Total: -7.10 kcal
Atomic # 7 Polarization: -33.39 SS G_CDS: 0.42 Total: -32.97 kcal
Atomic # 8 Polarization: -26.75 SS G_CDS: -0.58 Total: -27.33 kcal
Atomic # 14 Polarization: 24.80 SS G_CDS: -4.45 Total: 20.35 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -34.31 -7.01 -41.32 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113693601.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.850 kcal
(2) G-P(sol) polarization free energy of solvation -34.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.157 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds