Wall clock time and date at job start Mon Mar 30 2020 04:35:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47124 * 2 1
4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3
5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1
6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1
7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2
8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2
9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4
10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4
11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4
12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3
13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1
14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2
15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2
16 16 C 1.53011 * 109.46570 * 179.97438 * 15 13 12
17 17 C 1.52999 * 109.46552 * 179.97438 * 16 15 13
18 18 N 1.46504 * 109.46825 * 179.97438 * 17 16 15
19 19 C 1.34774 * 120.00156 * 179.97438 * 18 17 16
20 20 O 1.21287 * 120.00162 * 0.02562 * 19 18 17
21 21 C 1.50700 * 120.00179 * 179.97438 * 19 18 17
22 22 C 1.52996 * 117.50095 * 248.62275 * 21 19 18
23 23 C 1.53003 * 117.49669 * 179.97438 * 21 19 18
24 24 H 1.08999 * 109.47350 * 173.55599 * 1 2 3
25 25 H 1.09002 * 109.47000 * 293.56035 * 1 2 3
26 26 H 1.09003 * 109.47267 * 53.55672 * 1 2 3
27 27 H 0.96995 * 119.99950 * 355.18999 * 7 6 4
28 28 H 1.09001 * 109.46960 * 299.99017 * 15 13 12
29 29 H 1.08993 * 109.47469 * 59.99580 * 15 13 12
30 30 H 1.09001 * 109.47072 * 299.99433 * 16 15 13
31 31 H 1.08993 * 109.47172 * 59.99883 * 16 15 13
32 32 H 1.09001 * 109.47067 * 299.99556 * 17 16 15
33 33 H 1.08993 * 109.47380 * 60.00130 * 17 16 15
34 34 H 0.97001 * 119.99948 * 0.02562 * 18 17 16
35 35 H 1.08998 * 115.55006 * 34.33742 * 21 19 18
36 36 H 1.09000 * 117.49979 * 0.02562 * 22 21 19
37 37 H 1.08999 * 117.49832 * 145.02471 * 22 21 19
38 38 H 1.09000 * 117.49957 * 214.97748 * 23 21 19
39 39 H 1.08989 * 117.50219 * 359.97438 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2303
5 1 2.5778 -1.6375 1.1338
6 6 1.7957 -0.1767 2.4795
7 7 1.9545 -0.9199 3.5529
8 14 1.2421 1.5995 2.6466
9 1 2.4318 2.4788 2.7761
10 1 0.4656 1.9913 1.4431
11 1 0.3887 1.7405 3.8538
12 8 2.0139 -0.6845 -1.1856
13 6 2.2171 0.0641 -2.2812
14 8 1.9974 1.2518 -2.2506
15 6 2.7181 -0.5772 -3.5496
16 6 2.8623 0.4890 -4.6375
17 6 3.3716 -0.1620 -5.9251
18 7 3.5090 0.8587 -6.9670
19 6 3.9461 0.5141 -8.1944
20 8 4.2252 -0.6411 -8.4367
21 6 4.0870 1.5640 -9.2664
22 6 3.1204 1.4988 -10.4505
23 6 4.5886 1.1096 -10.6386
24 1 -0.3634 -1.0211 -0.1153
25 1 -0.3633 0.4108 0.9420
26 1 -0.3634 0.6105 -0.8267
27 1 2.1699 -1.8614 3.4634
28 1 3.6870 -1.0408 -3.3641
29 1 2.0086 -1.3369 -3.8775
30 1 1.8932 0.9523 -4.8229
31 1 3.5716 1.2489 -4.3098
32 1 4.3407 -0.6250 -5.7394
33 1 2.6626 -0.9221 -6.2530
34 1 3.2862 1.7827 -6.7732
35 1 4.3936 2.5510 -8.9203
36 1 2.3822 0.6968 -10.4540
37 1 2.7906 2.4431 -10.8836
38 1 5.2243 1.7981 -11.1953
39 1 4.8171 0.0516 -10.7659
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000113693601.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:35:56
Heat of formation + Delta-G solvation = -141.485399 kcal
Electronic energy + Delta-G solvation = -19722.045373 eV
Core-core repulsion = 16436.061853 eV
Total energy + Delta-G solvation = -3285.983520 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.42369 -40.94727 -38.00179 -37.33040 -36.43298 -35.37990 -33.86559 -32.41807
-28.80978 -27.02093 -25.40574 -23.61761 -23.29533 -22.54315 -21.40755 -20.83445
-19.86447 -18.69314 -18.35000 -17.56353 -17.38695 -16.68333 -16.55407 -15.93242
-15.69372 -15.31838 -14.98675 -14.95644 -14.66608 -14.23281 -13.75780 -13.54021
-13.37139 -13.29375 -13.24267 -12.56917 -12.54547 -12.44064 -12.12808 -11.97875
-11.74898 -11.55122 -11.54689 -11.45753 -11.37491 -11.00065 -10.96191 -10.64747
-10.14874 -8.94284 -6.57440 1.29240 1.43314 1.45146 1.45773 1.65769
1.84831 2.26555 2.37484 2.89778 2.92501 3.61488 3.74535 3.86658
3.92937 3.94177 3.98820 4.15688 4.24480 4.31566 4.45446 4.53004
4.54004 4.64070 4.68029 4.74691 4.86808 4.92310 5.03115 5.04167
5.14897 5.22569 5.28347 5.39442 5.47473 5.83707 5.95271 6.37427
6.50542 6.90234 7.19738 7.20638 8.46852
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.051211 B = 0.002696 C = 0.002639
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 546.621654 B =10381.524318 C =10609.471844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.193 3.807
3 H 0.033 0.967
4 C -0.618 4.618
5 H 0.030 0.970
6 C -0.005 4.005
7 N -0.920 5.920
8 Si 1.076 2.924
9 H -0.270 1.270
10 H -0.243 1.243
11 H -0.271 1.271
12 O -0.364 6.364
13 C 0.446 3.554
14 O -0.547 6.547
15 C -0.105 4.105
16 C -0.106 4.106
17 C 0.124 3.876
18 N -0.716 5.716
19 C 0.534 3.466
20 O -0.589 6.589
21 C -0.201 4.201
22 C -0.142 4.142
23 C -0.155 4.155
24 H 0.056 0.944
25 H 0.067 0.933
26 H 0.052 0.948
27 H 0.259 0.741
28 H 0.121 0.879
29 H 0.128 0.872
30 H 0.081 0.919
31 H 0.077 0.923
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.417 0.583
35 H 0.152 0.848
36 H 0.087 0.913
37 H 0.132 0.868
38 H 0.126 0.874
39 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.271 8.071 -26.371 27.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.139 3.861
3 H 0.051 0.949
4 C -0.655 4.655
5 H 0.048 0.952
6 C -0.205 4.205
7 N -0.554 5.554
8 Si 0.895 3.105
9 H -0.196 1.196
10 H -0.167 1.167
11 H -0.196 1.196
12 O -0.280 6.280
13 C 0.291 3.709
14 O -0.438 6.438
15 C -0.142 4.142
16 C -0.144 4.144
17 C 0.000 4.000
18 N -0.368 5.368
19 C 0.322 3.678
20 O -0.470 6.470
21 C -0.222 4.222
22 C -0.180 4.180
23 C -0.192 4.192
24 H 0.075 0.925
25 H 0.086 0.914
26 H 0.071 0.929
27 H 0.068 0.932
28 H 0.139 0.861
29 H 0.146 0.854
30 H 0.099 0.901
31 H 0.095 0.905
32 H 0.086 0.914
33 H 0.088 0.912
34 H 0.254 0.746
35 H 0.170 0.830
36 H 0.105 0.895
37 H 0.150 0.850
38 H 0.144 0.856
39 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 1.027 8.730 -25.342 26.823
hybrid contribution 0.507 -1.400 -0.257 1.511
sum 1.533 7.330 -25.599 26.672
Atomic orbital electron populations
1.22401 0.96076 1.01528 1.01493 1.20677 0.92323 0.93074 0.80058
0.94900 1.22077 1.41019 1.10530 0.91916 0.95172 1.27109 0.93528
1.09008 0.90866 1.70921 1.45108 1.08087 1.31299 0.83741 0.78336
0.70575 0.77868 1.19576 1.16704 1.19581 1.86533 1.76247 1.43775
1.21443 1.24557 0.73790 0.85907 0.86644 1.90566 1.50061 1.18039
1.85161 1.21355 1.05313 1.00050 0.87528 1.21448 1.03440 0.97458
0.92041 1.21251 1.01636 0.90905 0.86196 1.45865 1.66956 1.13122
1.10816 1.20285 0.75365 0.88817 0.83321 1.90686 1.52023 1.22353
1.81962 1.22300 1.10310 1.00294 0.89281 1.23046 0.92859 1.04632
0.97428 1.23021 0.97890 1.02751 0.95561 0.92487 0.91442 0.92930
0.93166 0.86054 0.85449 0.90062 0.90456 0.91433 0.91197 0.74630
0.83046 0.89467 0.85037 0.85567 0.89732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.90 8.83 71.98 0.64 -6.26 16
2 C 0.19 9.62 2.11 29.84 0.06 9.68 16
3 H 0.03 1.68 5.79 -2.39 -0.01 1.67 16
4 C -0.62 -35.96 9.18 25.60 0.24 -35.72 16
5 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16
6 C 0.00 -0.29 5.33 84.66 0.45 0.16 16
7 N -0.92 -56.55 13.70 21.45 0.29 -56.26 16
8 Si 1.08 48.98 26.17 68.60 1.80 50.78 16
9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
10 H -0.24 -10.01 5.53 99.48 0.55 -9.46 16
11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
12 O -0.36 -16.32 9.86 -51.40 -0.51 -16.83 16
13 C 0.45 16.13 7.93 71.24 0.56 16.69 16
14 O -0.55 -22.04 15.20 21.97 0.33 -21.71 16
15 C -0.10 -2.39 5.81 29.85 0.17 -2.21 16
16 C -0.11 -1.97 4.62 30.60 0.14 -1.83 16
17 C 0.12 2.17 5.67 86.38 0.49 2.66 16
18 N -0.72 -11.36 5.56 -463.06 -2.57 -13.93 16
19 C 0.53 10.61 7.61 87.66 0.67 11.28 16
20 O -0.59 -17.02 16.26 -3.05 -0.05 -17.07 16
21 C -0.20 -2.50 6.19 -11.54 -0.07 -2.57 16
22 C -0.14 -1.44 10.24 30.61 0.31 -1.13 16
23 C -0.15 -1.89 10.05 30.61 0.31 -1.58 16
24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16
25 H 0.07 2.92 5.06 -2.39 -0.01 2.90 16
26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
27 H 0.26 16.11 8.73 -92.71 -0.81 15.30 16
28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16
29 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16
30 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16
31 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16
32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
34 H 0.42 4.36 8.47 -92.71 -0.79 3.57 16
35 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16
36 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16
37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16
38 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16
39 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16
Total: -1.00 -75.83 331.44 3.33 -72.50
By element:
Atomic # 1 Polarization: 13.30 SS G_CDS: 0.07 Total: 13.37 kcal
Atomic # 6 Polarization: -14.82 SS G_CDS: 3.97 Total: -10.85 kcal
Atomic # 7 Polarization: -67.91 SS G_CDS: -2.28 Total: -70.19 kcal
Atomic # 8 Polarization: -55.38 SS G_CDS: -0.22 Total: -55.61 kcal
Atomic # 14 Polarization: 48.98 SS G_CDS: 1.80 Total: 50.78 kcal
Total: -75.83 3.33 -72.50 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113693601.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.986 kcal
(2) G-P(sol) polarization free energy of solvation -75.833 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.819 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds