Wall clock time and date at job start Mon Mar 30 2020 04:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50692 * 109.47493 * 120.00265 * 2 1 3 5 5 H 1.07997 * 120.00745 * 114.48070 * 4 2 1 6 6 C 1.37886 * 119.99910 * 294.47841 * 4 2 1 7 7 N 1.31515 * 119.99901 * 164.57919 * 6 4 2 8 8 Si 1.86802 * 119.99687 * 344.86044 * 6 4 2 9 9 H 1.48503 * 109.47217 * 269.71957 * 8 6 4 10 10 H 1.48494 * 109.47384 * 29.72405 * 8 6 4 11 11 H 1.48503 * 109.47137 * 149.72168 * 8 6 4 12 12 O 1.45205 * 109.46795 * 240.00276 * 2 1 3 13 13 C 1.34228 * 117.00068 * 90.00334 * 12 2 1 14 14 O 1.20825 * 120.00095 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99575 * 180.02562 * 13 12 2 16 16 C 1.53011 * 109.46570 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46552 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.46825 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00156 * 179.97438 * 18 17 16 20 20 O 1.21287 * 120.00162 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00179 * 179.97438 * 19 18 17 22 22 C 1.52996 * 117.50095 * 248.62275 * 21 19 18 23 23 C 1.53003 * 117.49669 * 179.97438 * 21 19 18 24 24 H 1.08999 * 109.47350 * 173.55599 * 1 2 3 25 25 H 1.09002 * 109.47000 * 293.56035 * 1 2 3 26 26 H 1.09003 * 109.47267 * 53.55672 * 1 2 3 27 27 H 0.96995 * 119.99950 * 355.18999 * 7 6 4 28 28 H 1.09001 * 109.46960 * 299.99017 * 15 13 12 29 29 H 1.08993 * 109.47469 * 59.99580 * 15 13 12 30 30 H 1.09001 * 109.47072 * 299.99433 * 16 15 13 31 31 H 1.08993 * 109.47172 * 59.99883 * 16 15 13 32 32 H 1.09001 * 109.47067 * 299.99556 * 17 16 15 33 33 H 1.08993 * 109.47380 * 60.00130 * 17 16 15 34 34 H 0.97001 * 119.99948 * 0.02562 * 18 17 16 35 35 H 1.08998 * 115.55006 * 34.33742 * 21 19 18 36 36 H 1.09000 * 117.49979 * 0.02562 * 22 21 19 37 37 H 1.08999 * 117.49832 * 145.02471 * 22 21 19 38 38 H 1.09000 * 117.49957 * 214.97748 * 23 21 19 39 39 H 1.08989 * 117.50219 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5778 -1.6375 1.1338 6 6 1.7957 -0.1767 2.4795 7 7 1.9545 -0.9199 3.5529 8 14 1.2421 1.5995 2.6466 9 1 2.4318 2.4788 2.7761 10 1 0.4656 1.9913 1.4431 11 1 0.3887 1.7405 3.8538 12 8 2.0139 -0.6845 -1.1856 13 6 2.2171 0.0641 -2.2812 14 8 1.9974 1.2518 -2.2506 15 6 2.7181 -0.5772 -3.5496 16 6 2.8623 0.4890 -4.6375 17 6 3.3716 -0.1620 -5.9251 18 7 3.5090 0.8587 -6.9670 19 6 3.9461 0.5141 -8.1944 20 8 4.2252 -0.6411 -8.4367 21 6 4.0870 1.5640 -9.2664 22 6 3.1204 1.4988 -10.4505 23 6 4.5886 1.1096 -10.6386 24 1 -0.3634 -1.0211 -0.1153 25 1 -0.3633 0.4108 0.9420 26 1 -0.3634 0.6105 -0.8267 27 1 2.1699 -1.8614 3.4634 28 1 3.6870 -1.0408 -3.3641 29 1 2.0086 -1.3369 -3.8775 30 1 1.8932 0.9523 -4.8229 31 1 3.5716 1.2489 -4.3098 32 1 4.3407 -0.6250 -5.7394 33 1 2.6626 -0.9221 -6.2530 34 1 3.2862 1.7827 -6.7732 35 1 4.3936 2.5510 -8.9203 36 1 2.3822 0.6968 -10.4540 37 1 2.7906 2.4431 -10.8836 38 1 5.2243 1.7981 -11.1953 39 1 4.8171 0.0516 -10.7659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:56 Heat of formation + Delta-G solvation = -141.485399 kcal Electronic energy + Delta-G solvation = -19722.045373 eV Core-core repulsion = 16436.061853 eV Total energy + Delta-G solvation = -3285.983520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42369 -40.94727 -38.00179 -37.33040 -36.43298 -35.37990 -33.86559 -32.41807 -28.80978 -27.02093 -25.40574 -23.61761 -23.29533 -22.54315 -21.40755 -20.83445 -19.86447 -18.69314 -18.35000 -17.56353 -17.38695 -16.68333 -16.55407 -15.93242 -15.69372 -15.31838 -14.98675 -14.95644 -14.66608 -14.23281 -13.75780 -13.54021 -13.37139 -13.29375 -13.24267 -12.56917 -12.54547 -12.44064 -12.12808 -11.97875 -11.74898 -11.55122 -11.54689 -11.45753 -11.37491 -11.00065 -10.96191 -10.64747 -10.14874 -8.94284 -6.57440 1.29240 1.43314 1.45146 1.45773 1.65769 1.84831 2.26555 2.37484 2.89778 2.92501 3.61488 3.74535 3.86658 3.92937 3.94177 3.98820 4.15688 4.24480 4.31566 4.45446 4.53004 4.54004 4.64070 4.68029 4.74691 4.86808 4.92310 5.03115 5.04167 5.14897 5.22569 5.28347 5.39442 5.47473 5.83707 5.95271 6.37427 6.50542 6.90234 7.19738 7.20638 8.46852 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051211 B = 0.002696 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.621654 B =10381.524318 C =10609.471844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.193 3.807 3 H 0.033 0.967 4 C -0.618 4.618 5 H 0.030 0.970 6 C -0.005 4.005 7 N -0.920 5.920 8 Si 1.076 2.924 9 H -0.270 1.270 10 H -0.243 1.243 11 H -0.271 1.271 12 O -0.364 6.364 13 C 0.446 3.554 14 O -0.547 6.547 15 C -0.105 4.105 16 C -0.106 4.106 17 C 0.124 3.876 18 N -0.716 5.716 19 C 0.534 3.466 20 O -0.589 6.589 21 C -0.201 4.201 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.259 0.741 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.152 0.848 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 8.071 -26.371 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 H 0.051 0.949 4 C -0.655 4.655 5 H 0.048 0.952 6 C -0.205 4.205 7 N -0.554 5.554 8 Si 0.895 3.105 9 H -0.196 1.196 10 H -0.167 1.167 11 H -0.196 1.196 12 O -0.280 6.280 13 C 0.291 3.709 14 O -0.438 6.438 15 C -0.142 4.142 16 C -0.144 4.144 17 C 0.000 4.000 18 N -0.368 5.368 19 C 0.322 3.678 20 O -0.470 6.470 21 C -0.222 4.222 22 C -0.180 4.180 23 C -0.192 4.192 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.170 0.830 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.027 8.730 -25.342 26.823 hybrid contribution 0.507 -1.400 -0.257 1.511 sum 1.533 7.330 -25.599 26.672 Atomic orbital electron populations 1.22401 0.96076 1.01528 1.01493 1.20677 0.92323 0.93074 0.80058 0.94900 1.22077 1.41019 1.10530 0.91916 0.95172 1.27109 0.93528 1.09008 0.90866 1.70921 1.45108 1.08087 1.31299 0.83741 0.78336 0.70575 0.77868 1.19576 1.16704 1.19581 1.86533 1.76247 1.43775 1.21443 1.24557 0.73790 0.85907 0.86644 1.90566 1.50061 1.18039 1.85161 1.21355 1.05313 1.00050 0.87528 1.21448 1.03440 0.97458 0.92041 1.21251 1.01636 0.90905 0.86196 1.45865 1.66956 1.13122 1.10816 1.20285 0.75365 0.88817 0.83321 1.90686 1.52023 1.22353 1.81962 1.22300 1.10310 1.00294 0.89281 1.23046 0.92859 1.04632 0.97428 1.23021 0.97890 1.02751 0.95561 0.92487 0.91442 0.92930 0.93166 0.86054 0.85449 0.90062 0.90456 0.91433 0.91197 0.74630 0.83046 0.89467 0.85037 0.85567 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 8.83 71.98 0.64 -6.26 16 2 C 0.19 9.62 2.11 29.84 0.06 9.68 16 3 H 0.03 1.68 5.79 -2.39 -0.01 1.67 16 4 C -0.62 -35.96 9.18 25.60 0.24 -35.72 16 5 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 6 C 0.00 -0.29 5.33 84.66 0.45 0.16 16 7 N -0.92 -56.55 13.70 21.45 0.29 -56.26 16 8 Si 1.08 48.98 26.17 68.60 1.80 50.78 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.24 -10.01 5.53 99.48 0.55 -9.46 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 O -0.36 -16.32 9.86 -51.40 -0.51 -16.83 16 13 C 0.45 16.13 7.93 71.24 0.56 16.69 16 14 O -0.55 -22.04 15.20 21.97 0.33 -21.71 16 15 C -0.10 -2.39 5.81 29.85 0.17 -2.21 16 16 C -0.11 -1.97 4.62 30.60 0.14 -1.83 16 17 C 0.12 2.17 5.67 86.38 0.49 2.66 16 18 N -0.72 -11.36 5.56 -463.06 -2.57 -13.93 16 19 C 0.53 10.61 7.61 87.66 0.67 11.28 16 20 O -0.59 -17.02 16.26 -3.05 -0.05 -17.07 16 21 C -0.20 -2.50 6.19 -11.54 -0.07 -2.57 16 22 C -0.14 -1.44 10.24 30.61 0.31 -1.13 16 23 C -0.15 -1.89 10.05 30.61 0.31 -1.58 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 2.92 5.06 -2.39 -0.01 2.90 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.26 16.11 8.73 -92.71 -0.81 15.30 16 28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 31 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 4.36 8.47 -92.71 -0.79 3.57 16 35 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -75.83 331.44 3.33 -72.50 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.07 Total: 13.37 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.97 Total: -10.85 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -2.28 Total: -70.19 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -0.22 Total: -55.61 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.80 Total: 50.78 kcal Total: -75.83 3.33 -72.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.986 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds