Wall clock time and date at job start Mon Mar 30 2020 04:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.53004 * 109.46636 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46808 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.46771 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99941 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99771 * 0.02562 * 19 18 17 21 21 C 1.50695 * 120.00213 * 180.02562 * 19 18 17 22 22 C 1.53010 * 117.49898 * 248.62293 * 21 19 18 23 23 C 1.53006 * 117.49871 * 180.02562 * 21 19 18 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 29 29 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 30 30 H 1.08995 * 109.47312 * 299.99809 * 16 15 13 31 31 H 1.09007 * 109.47032 * 60.00091 * 16 15 13 32 32 H 1.09004 * 109.46949 * 300.00042 * 17 16 15 33 33 H 1.08993 * 109.47310 * 60.00093 * 17 16 15 34 34 H 0.97006 * 120.00345 * 0.02562 * 18 17 16 35 35 H 1.09000 * 115.55457 * 34.33158 * 21 19 18 36 36 H 1.08996 * 117.49473 * 0.02562 * 22 21 19 37 37 H 1.08995 * 117.49866 * 145.01953 * 22 21 19 38 38 H 1.08997 * 117.49619 * 214.97634 * 23 21 19 39 39 H 1.08993 * 117.50066 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 6 2.8642 0.4895 4.6369 17 6 3.3735 -0.1614 5.9245 18 7 3.5117 0.8595 6.9661 19 6 3.9479 0.5148 8.1938 20 8 4.2265 -0.6405 8.4362 21 6 4.0895 1.5648 9.2654 22 6 5.5057 1.9229 9.7209 23 6 4.5901 1.1103 10.6380 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.0104 -1.3370 3.8775 29 1 3.6884 -1.0397 3.3633 30 1 3.5732 1.2494 4.3085 31 1 1.8952 0.9527 4.8230 32 1 2.6641 -0.9212 6.2527 33 1 4.3423 -0.6250 5.7388 34 1 3.2885 1.7834 6.7723 35 1 3.3514 2.3663 9.2388 36 1 6.3348 1.3993 9.2451 37 1 5.6994 2.9602 9.9938 38 1 4.1812 1.6130 11.5145 39 1 4.8165 0.0519 10.7660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:59 Heat of formation + Delta-G solvation = -119.864175 kcal Electronic energy + Delta-G solvation = -19643.571649 eV Core-core repulsion = 16358.525695 eV Total energy + Delta-G solvation = -3285.045953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18044 -39.56095 -36.85370 -36.03459 -35.33975 -33.29037 -32.74897 -29.68121 -27.66787 -25.34157 -24.47985 -22.80285 -22.36625 -21.28018 -20.25610 -19.44310 -17.71798 -17.08686 -16.58010 -16.20614 -16.12326 -15.47672 -15.23129 -14.99155 -14.54068 -14.19108 -13.99041 -12.96121 -12.84626 -12.69992 -12.40437 -12.04803 -11.92220 -11.84803 -11.52015 -11.22321 -11.06397 -11.01165 -10.97442 -10.86593 -10.84985 -10.40744 -10.29799 -10.11067 -9.66197 -9.54432 -9.29992 -8.93363 -8.50639 -6.20016 -4.27071 2.24396 2.83220 2.97638 3.25372 3.28804 3.31276 3.50633 3.68241 4.31790 4.34306 4.43782 4.51557 4.75121 4.88689 4.91058 4.94852 5.12960 5.22083 5.37588 5.43159 5.47012 5.56489 5.63346 5.75583 5.84586 5.99489 6.09096 6.22226 6.62073 6.86406 6.89417 7.15684 7.25400 7.58266 7.70925 7.92208 7.98608 8.12567 8.61533 8.86549 9.38432 10.87356 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.053479 B = 0.002540 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.449106 B =11021.086865 C =11142.851898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.357 6.357 13 C 0.452 3.548 14 O -0.525 6.525 15 C -0.113 4.113 16 C -0.120 4.120 17 C 0.118 3.882 18 N -0.725 5.725 19 C 0.541 3.459 20 O -0.543 6.543 21 C -0.197 4.197 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.015 0.985 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 2.120 20.945 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.199 1.199 12 O -0.273 6.273 13 C 0.294 3.706 14 O -0.415 6.415 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.005 4.005 18 N -0.376 5.376 19 C 0.327 3.673 20 O -0.420 6.420 21 C -0.218 4.218 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.034 0.966 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.238 0.762 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.278 1.735 20.878 21.605 hybrid contribution -0.041 0.246 -1.103 1.131 sum 5.236 1.982 19.775 20.553 Atomic orbital electron populations 1.22159 0.97576 1.00104 1.01382 1.20628 0.91389 0.93889 0.77849 0.93601 1.20997 1.32564 1.13505 0.88933 0.91352 1.24901 0.94926 0.95111 0.99102 1.69891 1.36000 1.22557 1.24291 0.86315 0.79210 0.79540 0.80956 1.21035 1.19979 1.19923 1.86485 1.75680 1.43718 1.21437 1.23288 0.74950 0.86000 0.86315 1.90592 1.49017 1.17034 1.84884 1.21186 1.04072 0.99205 0.90671 1.21576 1.03338 0.98287 0.92567 1.21399 1.01870 0.90765 0.86473 1.45932 1.67871 1.12507 1.11295 1.19667 0.76350 0.88737 0.82516 1.90703 1.49979 1.20154 1.81157 1.22213 1.00934 1.01838 0.96798 1.22941 0.91663 1.01634 1.02791 1.22948 1.01941 1.01948 0.91735 0.96566 0.88245 0.94429 0.92336 0.87971 0.87886 0.90218 0.90289 0.91090 0.91090 0.76186 0.85767 0.88200 0.87716 0.87902 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.33 37.16 0.35 -3.57 16 2 C 0.21 5.76 2.56 -27.89 -0.07 5.69 16 3 H 0.05 1.35 7.16 -51.92 -0.37 0.98 16 4 C -0.52 -14.66 8.90 -34.44 -0.31 -14.96 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.36 -8.38 9.86 -39.27 -0.39 -8.76 16 13 C 0.45 8.96 7.93 36.01 0.29 9.25 16 14 O -0.52 -11.81 15.20 -18.75 -0.28 -12.10 16 15 C -0.11 -1.49 5.81 -27.88 -0.16 -1.65 16 16 C -0.12 -1.34 4.62 -26.73 -0.12 -1.46 16 17 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 18 N -0.72 -6.75 5.56 -60.30 -0.33 -7.08 16 19 C 0.54 5.86 7.61 -10.99 -0.08 5.78 16 20 O -0.54 -7.98 16.26 5.56 0.09 -7.89 16 21 C -0.20 -1.49 6.19 -91.77 -0.57 -2.06 16 22 C -0.15 -0.99 10.23 -26.75 -0.27 -1.27 16 23 C -0.15 -1.05 10.04 -26.75 -0.27 -1.32 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 2.83 8.47 -40.82 -0.35 2.48 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -33.28 336.36 -7.63 -40.91 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.04 Total: 1.24 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.34 Total: -2.79 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.29 Total: -31.70 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.58 Total: -28.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.28 -7.63 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.951 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds