Wall clock time and date at job start Mon Mar 30 2020 04:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 C 1.53004 * 109.46636 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46808 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.46771 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99941 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99771 * 0.02562 * 19 18 17 21 21 C 1.50695 * 120.00213 * 180.02562 * 19 18 17 22 22 C 1.53010 * 117.49898 * 248.62293 * 21 19 18 23 23 C 1.53006 * 117.49871 * 180.02562 * 21 19 18 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 29 29 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 30 30 H 1.08995 * 109.47312 * 299.99809 * 16 15 13 31 31 H 1.09007 * 109.47032 * 60.00091 * 16 15 13 32 32 H 1.09004 * 109.46949 * 300.00042 * 17 16 15 33 33 H 1.08993 * 109.47310 * 60.00093 * 17 16 15 34 34 H 0.97006 * 120.00345 * 0.02562 * 18 17 16 35 35 H 1.09000 * 115.55457 * 34.33158 * 21 19 18 36 36 H 1.08996 * 117.49473 * 0.02562 * 22 21 19 37 37 H 1.08995 * 117.49866 * 145.01953 * 22 21 19 38 38 H 1.08997 * 117.49619 * 214.97634 * 23 21 19 39 39 H 1.08993 * 117.50066 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 6 2.8642 0.4895 4.6369 17 6 3.3735 -0.1614 5.9245 18 7 3.5117 0.8595 6.9661 19 6 3.9479 0.5148 8.1938 20 8 4.2265 -0.6405 8.4362 21 6 4.0895 1.5648 9.2654 22 6 5.5057 1.9229 9.7209 23 6 4.5901 1.1103 10.6380 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7088 1.1611 -3.4845 28 1 2.0104 -1.3370 3.8775 29 1 3.6884 -1.0397 3.3633 30 1 3.5732 1.2494 4.3085 31 1 1.8952 0.9527 4.8230 32 1 2.6641 -0.9212 6.2527 33 1 4.3423 -0.6250 5.7388 34 1 3.2885 1.7834 6.7723 35 1 3.3514 2.3663 9.2388 36 1 6.3348 1.3993 9.2451 37 1 5.6994 2.9602 9.9938 38 1 4.1812 1.6130 11.5145 39 1 4.8165 0.0519 10.7660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:59 Heat of formation + Delta-G solvation = -141.128467 kcal Electronic energy + Delta-G solvation = -19644.493738 eV Core-core repulsion = 16358.525695 eV Total energy + Delta-G solvation = -3285.968042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32193 -40.92825 -37.90783 -37.30535 -36.41405 -35.32837 -33.81852 -31.68825 -28.74434 -27.45782 -25.40424 -23.70057 -23.29022 -22.62450 -21.40997 -20.78957 -18.85664 -18.56813 -18.28108 -17.42975 -17.36350 -16.80870 -16.50606 -16.14855 -15.87346 -15.27556 -14.97404 -14.71142 -14.28198 -13.89493 -13.53949 -13.44320 -13.32515 -13.08102 -12.96935 -12.80996 -12.53328 -12.43231 -12.37997 -12.17264 -11.95708 -11.57308 -11.54239 -11.45025 -11.33925 -11.00257 -10.94293 -10.59756 -10.13457 -8.29305 -6.46216 1.37306 1.41986 1.45553 1.46184 1.53568 1.90710 2.25383 2.45721 2.93351 3.01244 3.65588 3.78634 3.88222 3.95259 3.95762 3.99890 4.22064 4.28697 4.49366 4.52232 4.61281 4.70062 4.75143 4.77718 4.84056 4.92785 5.03951 5.05734 5.17045 5.18044 5.23249 5.40961 5.48786 5.63465 5.93175 6.11470 6.51245 6.59364 6.98746 7.20365 7.26132 8.78071 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.053479 B = 0.002540 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.449106 B =11021.086865 C =11142.851898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.008 0.992 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.264 1.264 12 O -0.366 6.366 13 C 0.444 3.556 14 O -0.555 6.555 15 C -0.102 4.102 16 C -0.107 4.107 17 C 0.125 3.875 18 N -0.717 5.717 19 C 0.534 3.466 20 O -0.588 6.588 21 C -0.202 4.202 22 C -0.143 4.143 23 C -0.153 4.153 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.416 0.584 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 1.967 21.621 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.806 3.194 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.189 1.189 12 O -0.283 6.283 13 C 0.289 3.711 14 O -0.447 6.447 15 C -0.140 4.140 16 C -0.145 4.145 17 C 0.001 3.999 18 N -0.368 5.368 19 C 0.323 3.677 20 O -0.469 6.469 21 C -0.223 4.223 22 C -0.181 4.181 23 C -0.190 4.190 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.711 1.609 21.570 22.371 hybrid contribution -0.170 0.343 -1.249 1.307 sum 5.541 1.952 20.321 21.153 Atomic orbital electron populations 1.21979 0.96786 1.00372 1.00844 1.20318 0.92018 0.92046 0.79343 0.97466 1.21290 1.33457 1.13947 0.90049 0.91430 1.25850 0.94737 0.95696 1.02206 1.70011 1.36531 1.23656 1.25279 0.85228 0.78793 0.78612 0.76747 1.20254 1.19302 1.18868 1.86478 1.76170 1.43953 1.21680 1.24597 0.73803 0.85827 0.86883 1.90576 1.50278 1.18562 1.85290 1.21345 1.05423 0.99869 0.87339 1.21447 1.03179 0.97568 0.92311 1.21250 1.01713 0.90845 0.86043 1.45887 1.67104 1.13050 1.10799 1.20267 0.75408 0.88822 0.83247 1.90680 1.52084 1.22193 1.81975 1.22304 1.02493 1.01655 0.95830 1.23033 0.90547 1.02767 1.01739 1.23008 1.02439 1.01125 0.92470 0.95640 0.90166 0.93594 0.91987 0.85380 0.85670 0.90717 0.90497 0.91052 0.91237 0.74726 0.83096 0.89493 0.85096 0.85532 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.30 9.33 71.98 0.67 -6.62 16 2 C 0.22 11.84 2.56 29.85 0.08 11.92 16 3 H 0.01 0.46 7.16 -2.38 -0.02 0.44 16 4 C -0.55 -31.19 8.90 25.60 0.23 -30.96 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 6 C 0.01 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.98 42.71 29.54 68.60 2.03 44.73 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 12 O -0.37 -17.26 9.86 -51.45 -0.51 -17.77 16 13 C 0.44 17.48 7.93 71.24 0.56 18.05 16 14 O -0.56 -25.30 15.20 21.98 0.33 -24.97 16 15 C -0.10 -2.50 5.81 29.85 0.17 -2.33 16 16 C -0.11 -2.22 4.62 30.60 0.14 -2.08 16 17 C 0.13 2.34 5.67 86.38 0.49 2.83 16 18 N -0.72 -12.28 5.56 -463.07 -2.57 -14.85 16 19 C 0.53 11.08 7.61 87.66 0.67 11.75 16 20 O -0.59 -17.32 16.26 -3.04 -0.05 -17.37 16 21 C -0.20 -2.69 6.19 -11.54 -0.07 -2.76 16 22 C -0.14 -1.59 10.23 30.58 0.31 -1.28 16 23 C -0.15 -1.96 10.04 30.58 0.31 -1.65 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.08 4.43 6.07 -2.39 -0.01 4.41 16 26 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.13 2.59 8.14 -2.39 -0.02 2.58 16 30 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.08 1.66 8.10 -2.38 -0.02 1.64 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 5.04 8.47 -92.70 -0.79 4.25 16 35 H 0.15 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.50 7.67 -2.39 -0.02 1.48 16 Total: -1.00 -73.47 336.36 3.74 -69.73 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.26 Total: 14.72 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.01 Total: -1.88 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -2.33 Total: -67.20 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.22 Total: -60.10 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.47 3.74 -69.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.399 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds