Wall clock time and date at job start Mon Mar 30 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 N 1.46500 * 109.46897 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99929 * 270.00368 * 4 3 2 6 6 H 1.07998 * 120.00030 * 32.82014 * 5 4 3 7 7 C 1.38810 * 119.99867 * 212.82303 * 5 4 3 8 8 N 1.31621 * 120.00236 * 23.96849 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 203.97174 * 7 5 4 10 10 H 1.48490 * 109.47302 * 89.99918 * 9 7 5 11 11 H 1.48507 * 109.46954 * 210.00099 * 9 7 5 12 12 H 1.48503 * 109.46911 * 329.99439 * 9 7 5 13 13 C 1.46501 * 120.00079 * 90.00460 * 4 3 2 14 14 N 1.46507 * 109.46940 * 258.78774 * 13 4 3 15 15 C 1.47306 * 126.69261 * 269.98331 * 14 13 4 16 16 C 1.51580 * 103.59467 * 180.02562 * 15 14 13 17 17 O 1.21240 * 127.15636 * 180.02562 * 16 15 14 18 18 N 1.34768 * 105.68499 * 359.97438 * 16 15 14 19 19 C 1.46497 * 124.17875 * 180.26554 * 18 16 15 20 20 C 1.53002 * 109.47414 * 269.70057 * 19 18 16 21 21 C 1.33791 * 111.64420 * 0.02562 * 18 16 15 22 22 O 1.21541 * 123.77294 * 179.97438 * 21 18 16 23 23 H 1.09001 * 109.46698 * 299.99218 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99216 * 1 2 3 25 25 H 1.09002 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46698 * 240.00782 * 2 1 3 27 27 H 1.08998 * 109.47569 * 120.00191 * 2 1 3 28 28 H 1.09001 * 109.46848 * 60.00874 * 3 2 1 29 29 H 1.08998 * 109.47208 * 300.00413 * 3 2 1 30 30 H 0.96995 * 120.00273 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46923 * 138.79414 * 13 4 3 32 32 H 1.08995 * 109.46714 * 18.78624 * 13 4 3 33 33 H 1.09003 * 110.60039 * 298.56254 * 15 14 13 34 34 H 1.09005 * 110.60056 * 61.50632 * 15 14 13 35 35 H 1.09001 * 109.46785 * 29.69958 * 19 18 16 36 36 H 1.08998 * 109.47364 * 149.69866 * 19 18 16 37 37 H 1.08995 * 109.46960 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.46578 * 299.99671 * 20 19 18 39 39 H 1.08998 * 109.47010 * 59.99593 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 3.7798 0.9352 2.0458 7 6 5.4121 2.0940 1.2806 8 7 5.7017 3.0745 0.4517 9 14 6.6456 1.5792 2.5856 10 1 7.5332 0.5222 2.0383 11 1 7.4622 2.7534 2.9854 12 1 5.9217 1.0532 3.7708 13 6 4.2370 1.4429 -1.2697 14 7 4.7136 0.0880 -1.5588 15 6 6.0038 -0.4963 -1.1538 16 6 5.9523 -1.9011 -1.7208 17 8 6.8059 -2.7577 -1.6336 18 7 4.7599 -2.0002 -2.3410 19 6 4.2878 -3.2042 -3.0292 20 6 4.7162 -3.1537 -4.4972 21 6 4.0584 -0.8649 -2.2460 22 8 2.9528 -0.7116 -2.7271 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 6.5554 3.5301 0.5187 31 1 5.0882 2.1199 -1.1979 32 1 3.5757 1.7740 -2.0703 33 1 6.8317 0.0631 -1.5893 34 1 6.0880 -0.5242 -0.0674 35 1 4.7186 -4.0862 -2.5551 36 1 3.2006 -3.2542 -2.9695 37 1 4.3645 -4.0493 -5.0092 38 1 4.2854 -2.2718 -4.9711 39 1 5.8034 -3.1038 -4.5568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122152851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:21 Heat of formation + Delta-G solvation = -25.832141 kcal Electronic energy + Delta-G solvation = -22225.760670 eV Core-core repulsion = 18977.085003 eV Total energy + Delta-G solvation = -3248.675667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66797 -38.10462 -36.47696 -35.39482 -34.68483 -32.95535 -31.19149 -30.22253 -27.54720 -25.71914 -25.45110 -23.53621 -22.40328 -21.38063 -20.21979 -19.44069 -17.39332 -16.68445 -16.51541 -15.95515 -15.22162 -14.93599 -14.37453 -14.14785 -14.02233 -13.84246 -13.53386 -13.45209 -13.39674 -13.00754 -12.58516 -12.25179 -12.08340 -11.62723 -11.54381 -11.16712 -11.10172 -10.92826 -10.79894 -10.58267 -10.38100 -10.20066 -10.05722 -9.81727 -9.61438 -9.32308 -8.75363 -8.22909 -6.97914 -6.06407 -3.59141 2.11794 2.71617 3.21674 3.32596 3.33827 3.58161 3.74189 4.29678 4.67635 4.96533 5.08221 5.18879 5.32492 5.35358 5.56201 5.61235 5.72827 5.75613 5.81094 5.92476 6.03567 6.09012 6.13063 6.18449 6.28269 6.50121 6.56995 6.62914 6.65103 6.97732 7.09924 7.17970 7.44170 7.64282 7.79577 7.90420 8.24286 8.81038 8.91895 9.54215 10.09720 10.95088 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.008860 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.753392 B = 3159.597999 C = 4385.808805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C 0.145 3.855 4 N -0.570 5.570 5 C -0.263 4.263 6 H 0.066 0.934 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.364 3.636 14 N -0.602 5.602 15 C 0.063 3.937 16 C 0.520 3.480 17 O -0.495 6.495 18 N -0.582 5.582 19 C 0.116 3.884 20 C -0.165 4.165 21 C 0.686 3.314 22 O -0.559 6.559 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -6.973 -5.569 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C 0.019 3.981 4 N -0.289 5.289 5 C -0.392 4.392 6 H 0.083 0.917 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.158 3.842 14 N -0.345 5.345 15 C -0.064 4.064 16 C 0.309 3.691 17 O -0.368 6.368 18 N -0.329 5.329 19 C -0.005 4.005 20 C -0.224 4.224 21 C 0.388 3.612 22 O -0.435 6.435 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.925 -7.033 -5.734 9.276 hybrid contribution 0.723 -0.445 0.793 1.162 sum -1.202 -7.478 -4.941 9.043 Atomic orbital electron populations 1.21667 0.97340 1.00257 1.00763 1.22239 0.94057 1.00558 1.02279 1.21011 0.84308 0.93570 0.99169 1.44584 1.00361 1.80980 1.02939 1.19127 1.02042 1.27909 0.90149 0.91657 1.25048 1.00295 0.94996 0.98263 1.69840 1.23364 1.19817 1.39829 0.86450 0.81472 0.78184 0.81744 1.20735 1.21438 1.20112 1.21604 0.98139 0.78313 0.86122 1.50420 1.15981 1.14988 1.53075 1.22427 0.90472 0.89948 1.03576 1.21254 0.80783 0.90486 0.76616 1.90726 1.41376 1.46508 1.58154 1.46635 1.19201 1.15087 1.51928 1.21476 1.01080 0.85378 0.92611 1.22097 1.01921 1.02795 0.95548 1.16413 0.84339 0.80210 0.80266 1.90852 1.17945 1.81134 1.53601 0.93581 0.93332 0.93994 0.90852 0.93301 0.93157 0.94385 0.92955 0.85226 0.92072 0.87036 0.86118 0.89581 0.89070 0.91096 0.91846 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.15 -2.93 6.26 -26.73 -0.17 -3.10 16 3 C 0.15 3.02 5.70 -4.04 -0.02 2.99 16 4 N -0.57 -13.09 2.70 -176.94 -0.48 -13.56 16 5 C -0.26 -6.50 9.49 -15.06 -0.14 -6.64 16 6 H 0.07 1.67 7.94 -52.49 -0.42 1.25 16 7 C 0.01 0.35 5.02 -17.43 -0.09 0.27 16 8 N -0.89 -22.45 11.21 55.49 0.62 -21.83 16 9 Si 0.89 19.62 29.62 -169.99 -5.03 14.58 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.36 7.87 6.35 -63.74 -0.40 7.46 16 14 N -0.60 -11.84 3.26 -183.75 -0.60 -12.44 16 15 C 0.06 1.13 7.66 -4.32 -0.03 1.10 16 16 C 0.52 9.09 8.31 -10.56 -0.09 9.00 16 17 O -0.50 -9.33 17.76 5.59 0.10 -9.23 16 18 N -0.58 -9.85 2.60 -120.73 -0.31 -10.17 16 19 C 0.12 1.59 6.42 -4.04 -0.03 1.56 16 20 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 21 C 0.69 13.24 7.78 -88.02 -0.69 12.55 16 22 O -0.56 -11.83 15.06 5.33 0.08 -11.75 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.55 5.21 -51.93 -0.27 1.28 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.04 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.13 3.02 5.34 -51.93 -0.28 2.75 16 32 H 0.06 1.31 7.67 -51.93 -0.40 0.91 16 33 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.12 2.32 8.14 -51.93 -0.42 1.90 16 35 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 36 H 0.09 1.22 7.86 -51.93 -0.41 0.81 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -27.42 326.13 -7.57 -34.99 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.95 Total: 2.78 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: -0.91 Total: 21.72 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.77 Total: -58.00 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.18 Total: -20.99 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.42 -7.57 -34.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122152851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.153 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds