Wall clock time and date at job start Mon Mar 30 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 N 1.46500 * 109.46897 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99929 * 270.00368 * 4 3 2 6 6 H 1.07998 * 120.00030 * 32.82014 * 5 4 3 7 7 C 1.38810 * 119.99867 * 212.82303 * 5 4 3 8 8 N 1.31621 * 120.00236 * 23.96849 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 203.97174 * 7 5 4 10 10 H 1.48490 * 109.47302 * 89.99918 * 9 7 5 11 11 H 1.48507 * 109.46954 * 210.00099 * 9 7 5 12 12 H 1.48503 * 109.46911 * 329.99439 * 9 7 5 13 13 C 1.46501 * 120.00079 * 90.00460 * 4 3 2 14 14 N 1.46507 * 109.46940 * 258.78774 * 13 4 3 15 15 C 1.47306 * 126.69261 * 269.98331 * 14 13 4 16 16 C 1.51580 * 103.59467 * 180.02562 * 15 14 13 17 17 O 1.21240 * 127.15636 * 180.02562 * 16 15 14 18 18 N 1.34768 * 105.68499 * 359.97438 * 16 15 14 19 19 C 1.46497 * 124.17875 * 180.26554 * 18 16 15 20 20 C 1.53002 * 109.47414 * 269.70057 * 19 18 16 21 21 C 1.33791 * 111.64420 * 0.02562 * 18 16 15 22 22 O 1.21541 * 123.77294 * 179.97438 * 21 18 16 23 23 H 1.09001 * 109.46698 * 299.99218 * 1 2 3 24 24 H 1.08995 * 109.47096 * 59.99216 * 1 2 3 25 25 H 1.09002 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46698 * 240.00782 * 2 1 3 27 27 H 1.08998 * 109.47569 * 120.00191 * 2 1 3 28 28 H 1.09001 * 109.46848 * 60.00874 * 3 2 1 29 29 H 1.08998 * 109.47208 * 300.00413 * 3 2 1 30 30 H 0.96995 * 120.00273 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46923 * 138.79414 * 13 4 3 32 32 H 1.08995 * 109.46714 * 18.78624 * 13 4 3 33 33 H 1.09003 * 110.60039 * 298.56254 * 15 14 13 34 34 H 1.09005 * 110.60056 * 61.50632 * 15 14 13 35 35 H 1.09001 * 109.46785 * 29.69958 * 19 18 16 36 36 H 1.08998 * 109.47364 * 149.69866 * 19 18 16 37 37 H 1.08995 * 109.46960 * 180.02562 * 20 19 18 38 38 H 1.08997 * 109.46578 * 299.99671 * 20 19 18 39 39 H 1.08998 * 109.47010 * 59.99593 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 3.7798 0.9352 2.0458 7 6 5.4121 2.0940 1.2806 8 7 5.7017 3.0745 0.4517 9 14 6.6456 1.5792 2.5856 10 1 7.5332 0.5222 2.0383 11 1 7.4622 2.7534 2.9854 12 1 5.9217 1.0532 3.7708 13 6 4.2370 1.4429 -1.2697 14 7 4.7136 0.0880 -1.5588 15 6 6.0038 -0.4963 -1.1538 16 6 5.9523 -1.9011 -1.7208 17 8 6.8059 -2.7577 -1.6336 18 7 4.7599 -2.0002 -2.3410 19 6 4.2878 -3.2042 -3.0292 20 6 4.7162 -3.1537 -4.4972 21 6 4.0584 -0.8649 -2.2460 22 8 2.9528 -0.7116 -2.7271 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 6.5554 3.5301 0.5187 31 1 5.0882 2.1199 -1.1979 32 1 3.5757 1.7740 -2.0703 33 1 6.8317 0.0631 -1.5893 34 1 6.0880 -0.5242 -0.0674 35 1 4.7186 -4.0862 -2.5551 36 1 3.2006 -3.2542 -2.9695 37 1 4.3645 -4.0493 -5.0092 38 1 4.2854 -2.2718 -4.9711 39 1 5.8034 -3.1038 -4.5568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122152851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:20 Heat of formation + Delta-G solvation = -40.116600 kcal Electronic energy + Delta-G solvation = -22226.380091 eV Core-core repulsion = 18977.085003 eV Total energy + Delta-G solvation = -3249.295088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.14517 -39.62846 -38.14678 -36.94423 -36.08032 -34.62888 -32.75535 -31.64419 -29.05647 -27.38177 -27.09520 -24.77161 -23.94670 -22.89739 -21.86093 -20.92531 -19.07842 -18.18654 -17.99200 -17.47079 -16.97711 -16.46640 -16.01334 -15.71674 -15.65480 -15.09758 -15.04102 -14.90930 -14.88625 -14.38600 -14.04125 -13.55283 -13.32825 -13.21778 -13.12236 -12.70562 -12.61428 -12.45156 -12.25124 -12.18334 -12.04822 -11.90822 -11.65068 -11.39150 -11.14497 -10.75382 -10.60262 -9.82799 -8.81079 -7.93375 -5.50156 0.65553 1.29454 1.48251 1.53606 1.58212 2.07160 2.21775 2.49129 3.17274 3.25096 3.64702 3.80342 4.15896 4.20070 4.25510 4.30080 4.32605 4.40078 4.51376 4.53602 4.63538 4.75642 4.79877 4.94974 4.98005 5.01465 5.13990 5.19077 5.22067 5.41390 5.45079 5.55678 5.67663 5.83510 6.25863 6.39887 6.45506 7.06016 7.25553 7.71101 8.25025 9.05861 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.008860 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.753392 B = 3159.597999 C = 4385.808805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 C 0.145 3.855 4 N -0.584 5.584 5 C -0.271 4.271 6 H 0.052 0.948 7 C -0.013 4.013 8 N -0.906 5.906 9 Si 0.941 3.059 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.376 3.624 14 N -0.608 5.608 15 C 0.064 3.936 16 C 0.530 3.470 17 O -0.504 6.504 18 N -0.577 5.577 19 C 0.108 3.892 20 C -0.157 4.157 21 C 0.688 3.312 22 O -0.577 6.577 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.260 0.740 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -8.135 -5.944 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.019 3.981 4 N -0.304 5.304 5 C -0.401 4.401 6 H 0.070 0.930 7 C -0.211 4.211 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.170 3.830 14 N -0.350 5.350 15 C -0.063 4.063 16 C 0.319 3.681 17 O -0.378 6.378 18 N -0.323 5.323 19 C -0.012 4.012 20 C -0.215 4.215 21 C 0.390 3.610 22 O -0.455 6.455 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.951 -8.234 -6.130 10.449 hybrid contribution 0.702 -0.102 0.882 1.132 sum -1.249 -8.336 -5.248 9.930 Atomic orbital electron populations 1.21600 0.94576 1.01469 1.01646 1.22069 0.96422 0.98924 1.00570 1.21063 0.83429 0.94555 0.99014 1.44706 1.01183 1.81725 1.02783 1.19118 1.02657 1.27827 0.90509 0.93015 1.25482 1.01103 0.94855 0.99698 1.69925 1.23586 1.20434 1.40943 0.85706 0.79767 0.77712 0.79891 1.19801 1.21892 1.20502 1.21252 0.97396 0.78743 0.85654 1.50059 1.16827 1.14814 1.53303 1.22461 0.90140 0.90650 1.03060 1.21014 0.80743 0.89955 0.76365 1.90729 1.41712 1.46664 1.58677 1.46654 1.18635 1.15271 1.51772 1.21816 1.01433 0.84335 0.93664 1.22043 1.01544 1.03689 0.94227 1.16373 0.84079 0.80609 0.79916 1.90835 1.18758 1.81568 1.54337 0.92445 0.92700 0.92627 0.92503 0.94878 0.93674 0.94020 0.93009 0.86684 0.92227 0.85160 0.87269 0.88107 0.88788 0.88035 0.93178 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.91 71.98 0.71 -3.37 16 2 C -0.14 -5.34 6.26 30.60 0.19 -5.15 16 3 C 0.14 6.00 5.70 86.38 0.49 6.49 16 4 N -0.58 -26.95 2.70 -713.73 -1.93 -28.88 16 5 C -0.27 -13.48 9.49 84.03 0.80 -12.68 16 6 H 0.05 2.68 7.94 -2.91 -0.02 2.65 16 7 C -0.01 -0.61 5.02 84.86 0.43 -0.19 16 8 N -0.91 -45.86 11.21 21.65 0.24 -45.61 16 9 Si 0.94 39.99 29.62 68.60 2.03 42.02 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.38 16.30 6.35 170.96 1.08 17.38 16 14 N -0.61 -23.71 3.26 -853.68 -2.78 -26.49 16 15 C 0.06 2.23 7.66 85.76 0.66 2.89 16 16 C 0.53 17.80 8.31 87.94 0.73 18.53 16 17 O -0.50 -18.12 17.76 -2.91 -0.05 -18.17 16 18 N -0.58 -18.78 2.60 -773.12 -2.01 -20.80 16 19 C 0.11 2.72 6.42 86.38 0.55 3.28 16 20 C -0.16 -3.35 10.24 71.98 0.74 -2.61 16 21 C 0.69 26.07 7.78 179.44 1.40 27.46 16 22 O -0.58 -24.06 15.06 -3.85 -0.06 -24.12 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 2.36 5.21 -2.39 -0.01 2.35 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 29 H 0.04 1.67 7.84 -2.39 -0.02 1.65 16 30 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 31 H 0.12 5.41 5.34 -2.39 -0.01 5.39 16 32 H 0.06 2.56 7.67 -2.39 -0.02 2.55 16 33 H 0.13 4.03 8.14 -2.39 -0.02 4.02 16 34 H 0.11 4.13 8.14 -2.38 -0.02 4.11 16 35 H 0.10 2.27 8.00 -2.39 -0.02 2.25 16 36 H 0.09 2.34 7.86 -2.39 -0.02 2.33 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -56.84 326.13 4.26 -52.58 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.03 Total: 17.44 kcal Atomic # 6 Polarization: 44.25 SS G_CDS: 7.78 Total: 52.04 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.48 Total: -121.79 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.11 Total: -42.29 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -56.84 4.26 -52.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122152851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.461 kcal (2) G-P(sol) polarization free energy of solvation -56.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds