Wall clock time and date at job start Mon Mar 30 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37046 * 2 1 4 4 C 1.54001 * 110.33072 * 237.80640 * 2 1 3 5 5 N 1.47478 * 107.08782 * 242.41617 * 4 2 1 6 6 C 1.34771 * 127.03879 * 154.51450 * 5 4 2 7 7 O 1.21447 * 120.00170 * 180.02562 * 6 5 4 8 8 C 1.48833 * 120.00057 * 359.74975 * 6 5 4 9 9 O 1.21508 * 119.99665 * 0.27535 * 8 6 5 10 10 N 1.34771 * 120.00192 * 180.27363 * 8 6 5 11 11 C 1.36124 * 119.99836 * 179.97438 * 10 8 6 12 12 H 1.07995 * 120.00035 * 0.02562 * 11 10 8 13 13 C 1.39588 * 120.00093 * 180.02562 * 11 10 8 14 14 N 1.31018 * 119.99843 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00216 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46919 * 89.99602 * 15 13 11 17 17 H 1.48497 * 109.47174 * 209.99783 * 15 13 11 18 18 H 1.48504 * 109.46874 * 329.99732 * 15 13 11 19 19 C 1.48124 * 105.92838 * 334.78010 * 5 4 2 20 20 C 1.54584 * 103.42589 * 39.02175 * 19 5 4 21 21 H 1.09008 * 110.57641 * 81.17051 * 20 19 5 22 22 N 1.46896 * 110.83773 * 204.44835 * 20 19 5 23 23 C 1.46896 * 111.00452 * 177.34857 * 22 20 19 24 24 C 1.46904 * 111.00028 * 301.30345 * 22 20 19 25 25 H 1.09003 * 109.46876 * 180.73701 * 1 2 3 26 26 H 1.08998 * 109.47391 * 300.74225 * 1 2 3 27 27 H 1.09003 * 109.47200 * 60.74253 * 1 2 3 28 28 H 1.09003 * 109.91126 * 123.05053 * 4 2 1 29 29 H 1.09005 * 109.90786 * 1.77461 * 4 2 1 30 30 H 0.96996 * 120.00402 * 0.02562 * 10 8 6 31 31 H 0.96992 * 120.00224 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.66201 * 157.51338 * 19 5 4 33 33 H 1.09000 * 110.65626 * 280.61944 * 19 5 4 34 34 H 1.09003 * 109.47515 * 60.00082 * 23 22 20 35 35 H 1.09005 * 109.47362 * 179.97438 * 23 22 20 36 36 H 1.08998 * 109.46908 * 299.99904 * 23 22 20 37 37 H 1.09002 * 109.47222 * 65.52915 * 24 22 20 38 38 H 1.09001 * 109.47282 * 185.53347 * 24 22 20 39 39 H 1.09005 * 109.47158 * 305.53609 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0651 -0.7694 -1.2220 5 7 2.8277 -1.9224 -0.7083 6 6 3.0614 -3.0886 -1.3421 7 8 3.7100 -3.9576 -0.7953 8 6 2.5194 -3.3139 -2.7098 9 8 1.8704 -2.4444 -3.2569 10 7 2.7484 -4.4821 -3.3415 11 6 2.2521 -4.6883 -4.5922 12 1 1.6753 -3.9156 -5.0784 13 6 2.4888 -5.8985 -5.2463 14 7 3.1891 -6.8358 -4.6566 15 14 1.8085 -6.1812 -6.9628 16 1 2.8016 -5.7282 -7.9696 17 1 1.5340 -7.6280 -7.1544 18 1 0.5491 -5.4121 -7.1289 19 6 3.2788 -1.5390 0.6495 20 6 2.0671 -0.7723 1.2271 21 1 1.3174 -1.4683 1.6035 22 7 2.4918 0.1577 2.2819 23 6 1.3525 0.9334 2.7899 24 6 3.1700 -0.5567 3.3718 25 1 -0.3633 -1.0276 0.0132 26 1 -0.3634 0.5253 0.8832 27 1 -0.3634 0.5023 -0.8966 28 1 2.7182 -0.1244 -1.8100 29 1 1.2334 -1.1176 -1.8347 30 1 3.2661 -5.1764 -2.9047 31 1 3.3539 -7.6766 -5.1111 32 1 3.4935 -2.4245 1.2477 33 1 4.1522 -0.8892 0.5953 34 1 0.6057 0.2549 3.2022 35 1 1.6948 1.6136 3.5699 36 1 0.9114 1.5073 1.9749 37 1 4.1018 -0.9842 3.0015 38 1 3.3863 0.1388 4.1828 39 1 2.5252 -1.3548 3.7398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124007257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:11 Heat of formation + Delta-G solvation = -56.257690 kcal Electronic energy + Delta-G solvation = -21189.557480 eV Core-core repulsion = 17939.562462 eV Total energy + Delta-G solvation = -3249.995018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10310 -38.59772 -37.00715 -35.76673 -34.18216 -32.37223 -31.39598 -29.36258 -27.50816 -26.31306 -25.86153 -24.50554 -22.34601 -21.13921 -19.94998 -18.93909 -18.12885 -16.73356 -16.57816 -15.86429 -15.16311 -14.83308 -14.69060 -14.68179 -13.97237 -13.74515 -13.59258 -13.40751 -13.27699 -12.71951 -12.51403 -12.42969 -12.15318 -12.11745 -11.76960 -11.72094 -11.55839 -11.19874 -10.81601 -10.78097 -10.60214 -10.50602 -10.40832 -10.21838 -9.71291 -8.56518 -8.36823 -8.22146 -8.11202 -6.66672 -3.99081 2.44620 3.08629 3.14900 3.18136 3.25440 3.82985 4.05621 4.26144 4.41731 4.70594 4.93450 4.96021 5.00990 5.18408 5.19468 5.29260 5.32944 5.38068 5.45368 5.54748 5.61714 5.73076 5.80040 5.80313 5.94691 5.98435 6.04237 6.12062 6.31685 6.34637 6.61117 6.81358 6.94652 7.31318 7.74081 7.86990 8.29996 8.58756 8.96164 9.32280 9.85328 10.48304 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039024 B = 0.004154 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.338406 B = 6739.309759 C = 7277.782804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.092 0.908 4 C 0.110 3.890 5 N -0.603 5.603 6 C 0.532 3.468 7 O -0.548 6.548 8 C 0.399 3.601 9 O -0.590 6.590 10 N -0.499 5.499 11 C -0.305 4.305 12 H 0.113 0.887 13 C 0.031 3.969 14 N -0.869 5.869 15 Si 0.939 3.061 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.113 3.887 20 C 0.070 3.930 21 H 0.056 0.944 22 N -0.536 5.536 23 C 0.023 3.977 24 C 0.020 3.980 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.280 0.720 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 12.067 12.157 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 H 0.110 0.890 4 C -0.014 4.014 5 N -0.338 5.338 6 C 0.319 3.681 7 O -0.425 6.425 8 C 0.183 3.817 9 O -0.479 6.479 10 N -0.134 5.134 11 C -0.436 4.436 12 H 0.131 0.869 13 C -0.176 4.176 14 N -0.507 5.507 15 Si 0.764 3.236 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.011 4.011 20 C -0.039 4.039 21 H 0.074 0.926 22 N -0.260 5.260 23 C -0.126 4.126 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.572 12.175 11.778 17.134 hybrid contribution -0.481 -1.147 -0.055 1.245 sum -3.052 11.028 11.723 16.382 Atomic orbital electron populations 1.21946 0.94313 1.02270 1.01809 1.22215 0.96089 1.00141 0.93634 0.88983 1.22395 0.97429 0.86437 0.95099 1.48337 1.53823 1.15243 1.16438 1.20460 0.79969 0.80047 0.87626 1.90693 1.40789 1.42712 1.68314 1.18825 0.90227 0.85720 0.86912 1.90523 1.45871 1.43980 1.67520 1.41549 1.43415 1.13406 1.14990 1.19874 1.31172 1.01324 0.91215 0.86945 1.25587 0.96255 0.94950 1.00808 1.69485 1.36042 1.06295 1.38905 0.85720 0.79576 0.77724 0.80531 1.19897 1.20540 1.18899 1.22311 0.96313 0.98711 0.83718 1.22806 0.96318 0.93016 0.91768 0.92568 1.62028 1.27102 1.25714 1.11145 1.22464 0.92131 0.97592 1.00376 1.22441 0.99165 0.97504 0.93697 0.92405 0.92699 0.91851 0.91638 0.87452 0.76028 0.90925 0.90205 0.90293 0.95679 0.91474 0.90764 0.90944 0.91381 0.95480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.69 37.16 0.32 -1.28 16 2 C -0.10 -1.25 2.48 -89.25 -0.22 -1.47 16 3 H 0.09 1.04 7.84 -51.93 -0.41 0.63 16 4 C 0.11 1.78 5.84 -2.98 -0.02 1.76 16 5 N -0.60 -11.21 3.29 -170.72 -0.56 -11.78 16 6 C 0.53 12.13 7.94 -11.88 -0.09 12.04 16 7 O -0.55 -13.41 16.68 5.41 0.09 -13.31 16 8 C 0.40 10.17 7.79 -11.88 -0.09 10.07 16 9 O -0.59 -15.52 13.44 5.36 0.07 -15.45 16 10 N -0.50 -13.48 5.25 -11.59 -0.06 -13.54 16 11 C -0.31 -8.41 9.67 -15.14 -0.15 -8.55 16 12 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 13 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 14 N -0.87 -23.39 13.03 55.53 0.72 -22.67 16 15 Si 0.94 20.07 29.56 -169.99 -5.02 15.05 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 19 C 0.11 1.69 5.38 -2.32 -0.01 1.67 16 20 C 0.07 0.87 2.30 -66.03 -0.15 0.72 16 21 H 0.06 0.74 7.86 -51.92 -0.41 0.34 16 22 N -0.54 -5.65 4.85 -241.13 -1.17 -6.82 16 23 C 0.02 0.19 8.77 60.06 0.53 0.72 16 24 C 0.02 0.19 9.26 60.07 0.56 0.74 16 25 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.05 0.50 6.30 -51.93 -0.33 0.17 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.99 5.68 -51.93 -0.29 1.69 16 30 H 0.40 11.05 7.35 -40.82 -0.30 10.75 16 31 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 32 H 0.08 1.23 7.83 -51.93 -0.41 0.83 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 36 H 0.07 0.61 5.89 -51.93 -0.31 0.31 16 37 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 38 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 39 H 0.03 0.25 8.13 -51.93 -0.42 -0.17 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -30.22 317.47 -6.28 -36.50 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.71 Total: 10.09 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 0.57 Total: 17.14 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.07 Total: -54.80 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.16 Total: -28.76 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.22 -6.28 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124007257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.756 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds