Wall clock time and date at job start Mon Mar 30 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37046 * 2 1 4 4 C 1.54001 * 110.33072 * 237.80640 * 2 1 3 5 5 N 1.47478 * 107.08782 * 242.41617 * 4 2 1 6 6 C 1.34771 * 127.03879 * 154.51450 * 5 4 2 7 7 O 1.21447 * 120.00170 * 180.02562 * 6 5 4 8 8 C 1.48833 * 120.00057 * 359.74975 * 6 5 4 9 9 O 1.21508 * 119.99665 * 0.27535 * 8 6 5 10 10 N 1.34771 * 120.00192 * 180.27363 * 8 6 5 11 11 C 1.36124 * 119.99836 * 179.97438 * 10 8 6 12 12 H 1.07995 * 120.00035 * 0.02562 * 11 10 8 13 13 C 1.39588 * 120.00093 * 180.02562 * 11 10 8 14 14 N 1.31018 * 119.99843 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00216 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46919 * 89.99602 * 15 13 11 17 17 H 1.48497 * 109.47174 * 209.99783 * 15 13 11 18 18 H 1.48504 * 109.46874 * 329.99732 * 15 13 11 19 19 C 1.48124 * 105.92838 * 334.78010 * 5 4 2 20 20 C 1.54584 * 103.42589 * 39.02175 * 19 5 4 21 21 H 1.09008 * 110.57641 * 81.17051 * 20 19 5 22 22 N 1.46896 * 110.83773 * 204.44835 * 20 19 5 23 23 C 1.46896 * 111.00452 * 177.34857 * 22 20 19 24 24 C 1.46904 * 111.00028 * 301.30345 * 22 20 19 25 25 H 1.09003 * 109.46876 * 180.73701 * 1 2 3 26 26 H 1.08998 * 109.47391 * 300.74225 * 1 2 3 27 27 H 1.09003 * 109.47200 * 60.74253 * 1 2 3 28 28 H 1.09003 * 109.91126 * 123.05053 * 4 2 1 29 29 H 1.09005 * 109.90786 * 1.77461 * 4 2 1 30 30 H 0.96996 * 120.00402 * 0.02562 * 10 8 6 31 31 H 0.96992 * 120.00224 * 180.02562 * 14 13 11 32 32 H 1.08999 * 110.66201 * 157.51338 * 19 5 4 33 33 H 1.09000 * 110.65626 * 280.61944 * 19 5 4 34 34 H 1.09003 * 109.47515 * 60.00082 * 23 22 20 35 35 H 1.09005 * 109.47362 * 179.97438 * 23 22 20 36 36 H 1.08998 * 109.46908 * 299.99904 * 23 22 20 37 37 H 1.09002 * 109.47222 * 65.52915 * 24 22 20 38 38 H 1.09001 * 109.47282 * 185.53347 * 24 22 20 39 39 H 1.09005 * 109.47158 * 305.53609 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0651 -0.7694 -1.2220 5 7 2.8277 -1.9224 -0.7083 6 6 3.0614 -3.0886 -1.3421 7 8 3.7100 -3.9576 -0.7953 8 6 2.5194 -3.3139 -2.7098 9 8 1.8704 -2.4444 -3.2569 10 7 2.7484 -4.4821 -3.3415 11 6 2.2521 -4.6883 -4.5922 12 1 1.6753 -3.9156 -5.0784 13 6 2.4888 -5.8985 -5.2463 14 7 3.1891 -6.8358 -4.6566 15 14 1.8085 -6.1812 -6.9628 16 1 2.8016 -5.7282 -7.9696 17 1 1.5340 -7.6280 -7.1544 18 1 0.5491 -5.4121 -7.1289 19 6 3.2788 -1.5390 0.6495 20 6 2.0671 -0.7723 1.2271 21 1 1.3174 -1.4683 1.6035 22 7 2.4918 0.1577 2.2819 23 6 1.3525 0.9334 2.7899 24 6 3.1700 -0.5567 3.3718 25 1 -0.3633 -1.0276 0.0132 26 1 -0.3634 0.5253 0.8832 27 1 -0.3634 0.5023 -0.8966 28 1 2.7182 -0.1244 -1.8100 29 1 1.2334 -1.1176 -1.8347 30 1 3.2661 -5.1764 -2.9047 31 1 3.3539 -7.6766 -5.1111 32 1 3.4935 -2.4245 1.2477 33 1 4.1522 -0.8892 0.5953 34 1 0.6057 0.2549 3.2022 35 1 1.6948 1.6136 3.5699 36 1 0.9114 1.5073 1.9749 37 1 4.1018 -0.9842 3.0015 38 1 3.3863 0.1388 4.1828 39 1 2.5252 -1.3548 3.7398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124007257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:11 Heat of formation + Delta-G solvation = -79.029732 kcal Electronic energy + Delta-G solvation = -21190.544950 eV Core-core repulsion = 17939.562462 eV Total energy + Delta-G solvation = -3250.982488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63924 -40.11705 -38.85093 -37.01196 -36.12035 -33.68303 -33.35161 -30.56981 -28.27717 -27.97923 -27.32221 -25.86079 -23.76857 -22.38473 -21.04098 -20.79649 -20.04445 -18.35602 -17.98440 -17.53563 -16.81845 -16.45689 -15.96936 -15.78079 -15.54788 -15.20068 -14.95401 -14.73473 -14.36139 -14.22658 -13.94960 -13.68449 -13.35118 -13.33680 -13.11228 -12.96537 -12.66507 -12.57501 -12.42313 -12.14383 -12.10732 -11.86147 -11.83430 -11.64832 -11.53171 -10.28490 -10.14052 -9.83473 -9.37629 -8.66176 -6.10965 0.55899 1.39324 1.46668 1.52157 1.63173 2.26309 2.33383 2.89683 3.05817 3.14324 3.47771 3.56289 3.93295 3.97424 4.17960 4.27807 4.32985 4.46442 4.48983 4.63055 4.68852 4.71376 4.74184 4.84580 4.90142 4.96286 5.04612 5.10725 5.14415 5.23981 5.26221 5.40486 5.67865 6.02220 6.04388 6.18906 6.31558 6.71446 6.94150 7.26682 7.78863 8.49920 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039024 B = 0.004154 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.338406 B = 6739.309759 C = 7277.782804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.113 0.887 4 C 0.104 3.896 5 N -0.597 5.597 6 C 0.531 3.469 7 O -0.572 6.572 8 C 0.394 3.606 9 O -0.602 6.602 10 N -0.512 5.512 11 C -0.343 4.343 12 H 0.101 0.899 13 C -0.006 4.006 14 N -0.898 5.898 15 Si 1.011 2.989 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.262 1.262 19 C 0.110 3.890 20 C 0.082 3.918 21 H 0.049 0.951 22 N -0.539 5.539 23 C 0.020 3.980 24 C 0.018 3.982 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.399 0.601 31 H 0.289 0.711 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 13.606 12.847 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.019 4.019 5 N -0.330 5.330 6 C 0.317 3.683 7 O -0.452 6.452 8 C 0.179 3.821 9 O -0.492 6.492 10 N -0.146 5.146 11 C -0.473 4.473 12 H 0.119 0.881 13 C -0.210 4.210 14 N -0.535 5.535 15 Si 0.832 3.168 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.186 1.186 19 C -0.012 4.012 20 C -0.028 4.028 21 H 0.067 0.933 22 N -0.263 5.263 23 C -0.127 4.127 24 C -0.130 4.130 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.154 13.762 12.504 18.860 hybrid contribution -0.283 -1.524 -0.161 1.558 sum -3.437 12.239 12.343 17.719 Atomic orbital electron populations 1.21927 0.93093 1.01615 1.03339 1.22155 0.96954 1.00228 0.91315 0.86929 1.22556 0.96486 0.85812 0.97018 1.48397 1.52629 1.14279 1.17703 1.19905 0.80250 0.81346 0.86818 1.90671 1.42094 1.43896 1.68517 1.19395 0.89587 0.85136 0.87976 1.90502 1.46156 1.44174 1.68326 1.41648 1.43896 1.13802 1.15241 1.19992 1.33001 1.02240 0.92061 0.88135 1.26564 0.95794 0.93894 1.04712 1.69557 1.36474 1.06835 1.40665 0.84678 0.78902 0.78116 0.75118 1.18959 1.19177 1.18646 1.22557 0.98072 0.99060 0.81500 1.22614 0.94589 0.93042 0.92514 0.93297 1.62049 1.27955 1.25049 1.11271 1.22560 0.91520 0.97568 1.01094 1.22505 0.98708 0.97967 0.93834 0.94197 0.90128 0.91352 0.91285 0.89922 0.76648 0.90119 0.90856 0.88922 0.95516 0.89743 0.90157 0.91489 0.89362 0.95687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.69 71.98 0.63 -2.21 16 2 C -0.09 -1.97 2.48 -9.90 -0.02 -1.99 16 3 H 0.11 2.16 7.84 -2.39 -0.02 2.14 16 4 C 0.10 3.33 5.84 86.53 0.51 3.83 16 5 N -0.60 -22.26 3.29 -812.37 -2.68 -24.93 16 6 C 0.53 24.87 7.94 87.08 0.69 25.56 16 7 O -0.57 -28.77 16.68 -3.55 -0.06 -28.83 16 8 C 0.39 20.82 7.79 87.08 0.68 21.50 16 9 O -0.60 -32.65 13.44 -3.74 -0.05 -32.70 16 10 N -0.51 -28.73 5.25 -308.87 -1.62 -30.35 16 11 C -0.34 -19.48 9.67 84.35 0.82 -18.66 16 12 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 13 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 14 N -0.90 -48.85 13.03 21.77 0.28 -48.57 16 15 Si 1.01 40.97 29.56 68.60 2.03 42.99 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 17 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 C 0.11 3.19 5.38 86.61 0.47 3.65 16 20 C 0.08 1.89 2.30 46.01 0.11 1.99 16 21 H 0.05 1.22 7.86 -2.38 -0.02 1.20 16 22 N -0.54 -9.80 4.85 -916.81 -4.45 -14.25 16 23 C 0.02 0.27 8.77 127.69 1.12 1.39 16 24 C 0.02 0.29 9.26 127.69 1.18 1.47 16 25 H 0.04 0.94 8.13 -2.39 -0.02 0.92 16 26 H 0.08 1.21 6.30 -2.39 -0.02 1.19 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 3.11 5.68 -2.38 -0.01 3.09 16 30 H 0.40 22.80 7.35 -92.71 -0.68 22.12 16 31 H 0.29 14.36 8.30 -92.71 -0.77 13.60 16 32 H 0.07 2.24 7.83 -2.39 -0.02 2.22 16 33 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.03 0.36 8.14 -2.39 -0.02 0.35 16 35 H 0.08 0.89 8.06 -2.38 -0.02 0.87 16 36 H 0.08 1.00 5.89 -2.39 -0.01 0.98 16 37 H 0.07 1.15 7.32 -2.39 -0.02 1.13 16 38 H 0.09 1.07 8.02 -2.39 -0.02 1.06 16 39 H 0.02 0.41 8.13 -2.38 -0.02 0.39 16 Total: -1.00 -66.32 317.47 0.47 -65.85 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.38 Total: 34.09 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 6.63 Total: 36.71 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -8.46 Total: -118.11 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -0.11 Total: -61.53 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -66.32 0.47 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124007257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.177 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds