Wall clock time and date at job start Mon Mar 30 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.30478 * 2 1 4 4 C 1.54391 * 110.43053 * 122.22963 * 2 1 3 5 5 N 1.48151 * 104.61768 * 142.78472 * 4 2 1 6 6 C 1.34776 * 127.84015 * 140.41066 * 5 4 2 7 7 O 1.21432 * 120.00040 * 179.97438 * 6 5 4 8 8 C 1.48839 * 119.99879 * 359.97438 * 6 5 4 9 9 O 1.21497 * 119.99691 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99879 * 180.02562 * 8 6 5 11 11 C 1.36114 * 119.99910 * 180.02562 * 10 8 6 12 12 H 1.08004 * 120.00212 * 359.97438 * 11 10 8 13 13 C 1.39583 * 120.00084 * 179.97438 * 11 10 8 14 14 N 1.31014 * 120.00064 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00048 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47021 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46676 * 120.00028 * 15 13 11 18 18 H 1.48494 * 109.47122 * 239.99893 * 15 13 11 19 19 C 1.48145 * 104.32267 * 320.41657 * 5 4 2 20 20 C 1.54278 * 110.34665 * 237.82166 * 2 1 3 21 21 H 1.09001 * 110.34588 * 122.15371 * 20 2 1 22 22 N 1.46895 * 110.34145 * 359.89163 * 20 2 1 23 23 C 1.46905 * 111.00118 * 81.28937 * 22 20 2 24 24 C 1.46903 * 111.00411 * 205.24214 * 22 20 2 25 25 H 1.09008 * 109.46726 * 171.78733 * 1 2 3 26 26 H 1.09003 * 109.47430 * 291.78446 * 1 2 3 27 27 H 1.08999 * 109.47060 * 51.79058 * 1 2 3 28 28 H 1.08999 * 110.40793 * 261.56831 * 4 2 1 29 29 H 1.08994 * 110.41017 * 24.00212 * 4 2 1 30 30 H 0.97002 * 119.99691 * 359.97438 * 10 8 6 31 31 H 0.96995 * 119.99871 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.40841 * 280.79737 * 19 5 4 33 33 H 1.09003 * 110.40869 * 158.36794 * 19 5 4 34 34 H 1.08999 * 109.47128 * 59.99656 * 23 22 20 35 35 H 1.08995 * 109.47620 * 180.02562 * 23 22 20 36 36 H 1.09008 * 109.46821 * 300.00369 * 23 22 20 37 37 H 1.08994 * 109.47198 * 66.83366 * 24 22 20 38 38 H 1.09005 * 109.47364 * 186.84050 * 24 22 20 39 39 H 1.09007 * 109.46836 * 306.83289 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 1.2239 5 7 3.2692 -1.4794 0.7207 6 6 4.4461 -1.6625 1.3515 7 8 5.3417 -2.2705 0.8013 8 6 4.6481 -1.1194 2.7225 9 8 3.7521 -0.5106 3.2727 10 7 5.8251 -1.3020 3.3530 11 6 6.0096 -0.8058 4.6070 12 1 5.2129 -0.2653 5.0965 13 6 7.2285 -0.9954 5.2603 14 7 8.1948 -1.6515 4.6667 15 14 7.4819 -0.3138 6.9810 16 1 6.2468 0.3809 7.4251 17 1 7.7858 -1.4277 7.9148 18 1 8.6144 0.6467 6.9711 19 6 2.8825 -1.9400 -0.6331 20 6 2.0664 -0.7704 -1.2243 21 1 2.7081 -0.1265 -1.8258 22 7 0.9525 -1.2826 -2.0335 23 6 0.4155 -0.2355 -2.9129 24 6 1.3630 -2.4612 -2.8083 25 1 -0.3633 -1.0172 -0.1468 26 1 -0.3634 0.3814 0.9543 27 1 -0.3633 0.6356 -0.8075 28 1 2.3420 -0.0788 2.0199 29 1 1.3271 -1.4868 1.5791 30 1 6.5405 -1.7878 2.9135 31 1 9.0416 -1.7835 5.1208 32 1 2.2677 -2.8377 -0.5679 33 1 3.7693 -2.1288 -1.2381 34 1 1.2012 0.1153 -3.5819 35 1 -0.4081 -0.6413 -3.5003 36 1 0.0547 0.5968 -2.3084 37 1 1.5751 -3.2868 -2.1290 38 1 0.5601 -2.7469 -3.4880 39 1 2.2584 -2.2243 -3.3831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124007392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:13 Heat of formation + Delta-G solvation = -41.460029 kcal Electronic energy + Delta-G solvation = -21223.890083 eV Core-core repulsion = 17974.536739 eV Total energy + Delta-G solvation = -3249.353343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14216 -38.68249 -37.02036 -35.65580 -34.17650 -32.27749 -31.40919 -29.40055 -27.44481 -26.17238 -25.80575 -24.58695 -22.60204 -21.46181 -19.25030 -18.93569 -18.13495 -16.66703 -16.35169 -16.09375 -15.20844 -15.06838 -14.88150 -14.64726 -14.39381 -13.89362 -13.40245 -13.24813 -12.74060 -12.72515 -12.41430 -12.27848 -12.21340 -11.98588 -11.88757 -11.76987 -11.27638 -11.21881 -10.90959 -10.60191 -10.54153 -10.42768 -10.40677 -10.14260 -9.73656 -8.46574 -8.39980 -8.23256 -8.08867 -6.67528 -3.99930 2.43568 3.09714 3.13659 3.18621 3.27003 3.82569 4.05427 4.24845 4.51765 4.71844 4.91248 4.98962 5.04585 5.17815 5.19059 5.31507 5.34462 5.39819 5.49340 5.58252 5.68714 5.71021 5.81800 5.89160 5.95449 6.02706 6.12248 6.27246 6.39610 6.51319 6.63995 6.85584 6.95800 7.30896 7.74009 7.89605 8.30053 8.58404 8.95645 9.31393 9.84595 10.47433 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041746 B = 0.004088 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.564339 B = 6847.224732 C = 7362.253512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.100 3.900 5 N -0.605 5.605 6 C 0.534 3.466 7 O -0.549 6.549 8 C 0.399 3.601 9 O -0.590 6.590 10 N -0.499 5.499 11 C -0.305 4.305 12 H 0.114 0.886 13 C 0.031 3.969 14 N -0.869 5.869 15 Si 0.939 3.061 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.106 3.894 20 C 0.069 3.931 21 H 0.054 0.946 22 N -0.531 5.531 23 C 0.017 3.983 24 C 0.016 3.984 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.405 0.595 31 H 0.280 0.720 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.722 1.466 -12.032 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.094 0.906 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.321 3.679 7 O -0.426 6.426 8 C 0.184 3.816 9 O -0.479 6.479 10 N -0.133 5.133 11 C -0.435 4.435 12 H 0.131 0.869 13 C -0.176 4.176 14 N -0.507 5.507 15 Si 0.764 3.236 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.017 4.017 20 C -0.040 4.040 21 H 0.072 0.928 22 N -0.255 5.255 23 C -0.131 4.131 24 C -0.132 4.132 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.240 0.760 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.858 1.299 -11.539 17.325 hybrid contribution 1.303 0.182 -0.223 1.334 sum -11.555 1.481 -11.762 16.555 Atomic orbital electron populations 1.21751 0.93438 1.03090 1.00523 1.22190 0.97111 0.98895 0.93789 0.90619 1.22889 0.85618 0.96614 0.97133 1.48554 1.13327 1.55744 1.16334 1.20422 0.80206 0.79646 0.87620 1.90688 1.41391 1.42305 1.68221 1.18816 0.85602 0.90328 0.86862 1.90463 1.42218 1.47767 1.67406 1.41559 1.12159 1.44731 1.14821 1.19932 1.00138 1.32591 0.90886 0.86852 1.25594 0.94863 0.96295 1.00863 1.69493 1.04832 1.37499 1.38849 0.85666 0.78896 0.78677 0.80363 1.18680 1.20289 1.20298 1.22464 0.98364 0.96462 0.84428 1.22665 0.90700 0.95849 0.94770 0.92757 1.62128 1.32258 1.07030 1.24108 1.22646 0.99218 0.95418 0.95854 1.22501 0.99458 0.93826 0.97450 0.90883 0.93297 0.92638 0.86129 0.91497 0.76013 0.90962 0.90289 0.90321 0.95840 0.91427 0.90297 0.90731 0.91460 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 7.94 37.16 0.29 -1.09 16 2 C -0.10 -1.28 3.60 -89.22 -0.32 -1.61 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.10 1.64 6.15 -2.40 -0.01 1.62 16 5 N -0.60 -11.29 3.32 -170.04 -0.56 -11.85 16 6 C 0.53 12.20 7.96 -11.87 -0.09 12.11 16 7 O -0.55 -13.45 16.73 5.42 0.09 -13.36 16 8 C 0.40 10.19 7.80 -11.87 -0.09 10.09 16 9 O -0.59 -15.51 13.32 5.37 0.07 -15.44 16 10 N -0.50 -13.44 5.25 -11.59 -0.06 -13.51 16 11 C -0.30 -8.39 9.67 -15.15 -0.15 -8.53 16 12 H 0.11 3.17 7.15 -52.48 -0.38 2.79 16 13 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 14 N -0.87 -23.34 13.03 55.53 0.72 -22.62 16 15 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.11 1.57 5.53 -2.41 -0.01 1.56 16 20 C 0.07 0.86 2.92 -66.32 -0.19 0.67 16 21 H 0.05 0.69 7.95 -51.93 -0.41 0.28 16 22 N -0.53 -5.44 3.33 -241.47 -0.80 -6.25 16 23 C 0.02 0.14 9.00 60.07 0.54 0.68 16 24 C 0.02 0.14 8.79 60.07 0.53 0.67 16 25 H 0.07 0.81 7.34 -51.92 -0.38 0.43 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.51 5.39 -51.93 -0.28 0.23 16 28 H 0.12 2.30 5.47 -51.93 -0.28 2.02 16 29 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 30 H 0.40 11.04 7.35 -40.82 -0.30 10.74 16 31 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 32 H 0.08 1.09 6.36 -51.93 -0.33 0.76 16 33 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 34 H 0.02 0.20 8.09 -51.93 -0.42 -0.22 16 35 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 36 H 0.08 0.64 5.27 -51.92 -0.27 0.37 16 37 H 0.07 0.70 6.22 -51.93 -0.32 0.38 16 38 H 0.07 0.51 8.00 -51.93 -0.42 0.09 16 39 H 0.03 0.25 8.11 -51.92 -0.42 -0.17 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -30.07 311.79 -5.91 -35.98 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.43 Total: 10.46 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 0.39 Total: 16.87 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.71 Total: -54.22 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: 0.16 Total: -28.80 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.07 -5.91 -35.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124007392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.478 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds