Wall clock time and date at job start Mon Mar 30 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.30478 * 2 1 4 4 C 1.54391 * 110.43053 * 122.22963 * 2 1 3 5 5 N 1.48151 * 104.61768 * 142.78472 * 4 2 1 6 6 C 1.34776 * 127.84015 * 140.41066 * 5 4 2 7 7 O 1.21432 * 120.00040 * 179.97438 * 6 5 4 8 8 C 1.48839 * 119.99879 * 359.97438 * 6 5 4 9 9 O 1.21497 * 119.99691 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99879 * 180.02562 * 8 6 5 11 11 C 1.36114 * 119.99910 * 180.02562 * 10 8 6 12 12 H 1.08004 * 120.00212 * 359.97438 * 11 10 8 13 13 C 1.39583 * 120.00084 * 179.97438 * 11 10 8 14 14 N 1.31014 * 120.00064 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00048 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47021 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46676 * 120.00028 * 15 13 11 18 18 H 1.48494 * 109.47122 * 239.99893 * 15 13 11 19 19 C 1.48145 * 104.32267 * 320.41657 * 5 4 2 20 20 C 1.54278 * 110.34665 * 237.82166 * 2 1 3 21 21 H 1.09001 * 110.34588 * 122.15371 * 20 2 1 22 22 N 1.46895 * 110.34145 * 359.89163 * 20 2 1 23 23 C 1.46905 * 111.00118 * 81.28937 * 22 20 2 24 24 C 1.46903 * 111.00411 * 205.24214 * 22 20 2 25 25 H 1.09008 * 109.46726 * 171.78733 * 1 2 3 26 26 H 1.09003 * 109.47430 * 291.78446 * 1 2 3 27 27 H 1.08999 * 109.47060 * 51.79058 * 1 2 3 28 28 H 1.08999 * 110.40793 * 261.56831 * 4 2 1 29 29 H 1.08994 * 110.41017 * 24.00212 * 4 2 1 30 30 H 0.97002 * 119.99691 * 359.97438 * 10 8 6 31 31 H 0.96995 * 119.99871 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.40841 * 280.79737 * 19 5 4 33 33 H 1.09003 * 110.40869 * 158.36794 * 19 5 4 34 34 H 1.08999 * 109.47128 * 59.99656 * 23 22 20 35 35 H 1.08995 * 109.47620 * 180.02562 * 23 22 20 36 36 H 1.09008 * 109.46821 * 300.00369 * 23 22 20 37 37 H 1.08994 * 109.47198 * 66.83366 * 24 22 20 38 38 H 1.09005 * 109.47364 * 186.84050 * 24 22 20 39 39 H 1.09007 * 109.46836 * 306.83289 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 1.2239 5 7 3.2692 -1.4794 0.7207 6 6 4.4461 -1.6625 1.3515 7 8 5.3417 -2.2705 0.8013 8 6 4.6481 -1.1194 2.7225 9 8 3.7521 -0.5106 3.2727 10 7 5.8251 -1.3020 3.3530 11 6 6.0096 -0.8058 4.6070 12 1 5.2129 -0.2653 5.0965 13 6 7.2285 -0.9954 5.2603 14 7 8.1948 -1.6515 4.6667 15 14 7.4819 -0.3138 6.9810 16 1 6.2468 0.3809 7.4251 17 1 7.7858 -1.4277 7.9148 18 1 8.6144 0.6467 6.9711 19 6 2.8825 -1.9400 -0.6331 20 6 2.0664 -0.7704 -1.2243 21 1 2.7081 -0.1265 -1.8258 22 7 0.9525 -1.2826 -2.0335 23 6 0.4155 -0.2355 -2.9129 24 6 1.3630 -2.4612 -2.8083 25 1 -0.3633 -1.0172 -0.1468 26 1 -0.3634 0.3814 0.9543 27 1 -0.3633 0.6356 -0.8075 28 1 2.3420 -0.0788 2.0199 29 1 1.3271 -1.4868 1.5791 30 1 6.5405 -1.7878 2.9135 31 1 9.0416 -1.7835 5.1208 32 1 2.2677 -2.8377 -0.5679 33 1 3.7693 -2.1288 -1.2381 34 1 1.2012 0.1153 -3.5819 35 1 -0.4081 -0.6413 -3.5003 36 1 0.0547 0.5968 -2.3084 37 1 1.5751 -3.2868 -2.1290 38 1 0.5601 -2.7469 -3.4880 39 1 2.2584 -2.2243 -3.3831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124007392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:13 Heat of formation + Delta-G solvation = -63.092306 kcal Electronic energy + Delta-G solvation = -21224.828129 eV Core-core repulsion = 17974.536739 eV Total energy + Delta-G solvation = -3250.291389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64493 -40.20589 -38.87488 -36.95390 -36.09047 -33.60831 -33.30533 -30.58582 -28.26464 -27.96400 -27.07786 -25.95394 -23.87777 -22.84722 -20.85541 -20.25821 -20.06176 -18.33868 -17.88807 -17.47304 -16.88280 -16.55986 -16.04081 -15.87436 -15.65122 -15.61925 -14.97056 -14.79648 -14.18143 -13.98266 -13.70070 -13.56592 -13.30260 -13.19390 -12.98223 -12.93556 -12.89886 -12.55996 -12.25180 -12.08682 -12.03940 -11.91523 -11.68203 -11.60367 -11.38079 -10.28946 -10.10095 -9.87640 -9.25718 -8.66703 -6.11488 0.55235 1.39615 1.45486 1.52893 1.64273 2.26453 2.33020 2.91208 3.09798 3.14158 3.50107 3.59864 3.91759 4.00374 4.18895 4.25535 4.35591 4.51116 4.55325 4.64370 4.66926 4.68579 4.80845 4.89744 4.96224 5.02092 5.08914 5.17646 5.25252 5.27970 5.39915 5.66669 5.67791 6.04238 6.09261 6.22223 6.31702 6.71587 6.93966 7.26258 7.78669 8.49544 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041746 B = 0.004088 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.564339 B = 6847.224732 C = 7362.253512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 H 0.075 0.925 4 C 0.096 3.904 5 N -0.600 5.600 6 C 0.533 3.467 7 O -0.573 6.573 8 C 0.395 3.605 9 O -0.602 6.602 10 N -0.511 5.511 11 C -0.343 4.343 12 H 0.101 0.899 13 C -0.006 4.006 14 N -0.897 5.897 15 Si 1.012 2.988 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.266 1.266 19 C 0.104 3.896 20 C 0.080 3.920 21 H 0.054 0.946 22 N -0.532 5.532 23 C 0.016 3.984 24 C 0.014 3.986 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.399 0.601 31 H 0.289 0.711 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 1.879 -12.773 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.026 4.026 5 N -0.333 5.333 6 C 0.319 3.681 7 O -0.453 6.453 8 C 0.180 3.820 9 O -0.492 6.492 10 N -0.145 5.145 11 C -0.472 4.472 12 H 0.119 0.881 13 C -0.210 4.210 14 N -0.535 5.535 15 Si 0.832 3.168 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.018 4.018 20 C -0.029 4.029 21 H 0.072 0.928 22 N -0.257 5.257 23 C -0.132 4.132 24 C -0.134 4.134 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.389 1.718 -12.317 19.019 hybrid contribution 1.660 0.034 -0.100 1.663 sum -12.730 1.751 -12.418 17.869 Atomic orbital electron populations 1.21703 0.91195 1.03550 1.01472 1.22141 0.98779 0.98202 0.92032 0.90619 1.22999 0.84808 0.96514 0.98246 1.48623 1.12442 1.54510 1.17711 1.19859 0.81485 0.79945 0.86799 1.90666 1.42552 1.43637 1.68426 1.19396 0.85028 0.89671 0.87953 1.90453 1.42426 1.48043 1.68252 1.41659 1.12528 1.45243 1.15058 1.20034 1.00956 1.34529 0.91722 0.88115 1.26569 0.93803 0.95808 1.04784 1.69562 1.05414 1.37884 1.40632 0.84621 0.78905 0.78290 0.74966 1.18614 1.19106 1.19087 1.22728 0.98759 0.98184 0.82096 1.22486 0.91117 0.94474 0.94840 0.92848 1.62153 1.30825 1.07822 1.24872 1.22721 0.99650 0.95083 0.95733 1.22556 1.00231 0.93109 0.97511 0.90937 0.93159 0.90610 0.89005 0.90427 0.76628 0.90107 0.88704 0.90942 0.95811 0.89635 0.89874 0.91254 0.89460 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 7.94 71.98 0.57 -1.68 16 2 C -0.09 -2.20 3.60 -9.89 -0.04 -2.24 16 3 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 4 C 0.10 3.11 6.15 86.53 0.53 3.65 16 5 N -0.60 -22.42 3.32 -810.21 -2.69 -25.11 16 6 C 0.53 24.99 7.96 87.08 0.69 25.69 16 7 O -0.57 -28.82 16.73 -3.50 -0.06 -28.88 16 8 C 0.39 20.85 7.80 87.08 0.68 21.53 16 9 O -0.60 -32.73 13.32 -3.70 -0.05 -32.78 16 10 N -0.51 -28.67 5.25 -308.87 -1.62 -30.29 16 11 C -0.34 -19.44 9.67 84.35 0.82 -18.62 16 12 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 13 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 14 N -0.90 -48.74 13.03 21.76 0.28 -48.46 16 15 Si 1.01 40.93 29.56 68.60 2.03 42.96 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 19 C 0.10 2.98 5.53 86.54 0.48 3.46 16 20 C 0.08 1.84 2.92 45.82 0.13 1.97 16 21 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 22 N -0.53 -9.35 3.33 -917.89 -3.06 -12.41 16 23 C 0.02 0.21 9.00 127.69 1.15 1.36 16 24 C 0.01 0.21 8.79 127.69 1.12 1.33 16 25 H 0.07 1.38 7.34 -2.38 -0.02 1.37 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.12 5.39 -2.39 -0.01 1.11 16 28 H 0.09 3.57 5.47 -2.39 -0.01 3.56 16 29 H 0.08 2.35 7.87 -2.39 -0.02 2.33 16 30 H 0.40 22.78 7.35 -92.71 -0.68 22.10 16 31 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 32 H 0.10 2.45 6.36 -2.39 -0.02 2.44 16 33 H 0.07 2.18 7.88 -2.39 -0.02 2.17 16 34 H 0.02 0.33 8.09 -2.39 -0.02 0.31 16 35 H 0.08 0.87 8.05 -2.39 -0.02 0.86 16 36 H 0.08 1.04 5.27 -2.38 -0.01 1.03 16 37 H 0.07 1.14 6.22 -2.39 -0.01 1.13 16 38 H 0.09 1.03 8.00 -2.38 -0.02 1.01 16 39 H 0.03 0.41 8.11 -2.38 -0.02 0.39 16 Total: -1.00 -65.95 311.79 1.84 -64.11 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.39 Total: 34.23 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 6.61 Total: 36.62 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -7.08 Total: -116.26 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -0.11 Total: -61.66 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -65.95 1.84 -64.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124007392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.021 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds