Wall clock time and date at job start Mon Mar 30 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47194 * 2 1 4 4 C 1.46507 * 119.99949 * 274.48507 * 3 2 1 5 5 C 1.50703 * 109.46524 * 264.41052 * 4 3 2 6 6 H 1.08000 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99552 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46896 * 90.00037 * 9 7 5 11 11 H 1.48495 * 109.47261 * 210.00085 * 9 7 5 12 12 H 1.48498 * 109.46849 * 330.00307 * 9 7 5 13 13 C 1.34774 * 120.00184 * 94.47939 * 3 2 1 14 14 O 1.21284 * 119.99763 * 3.47350 * 13 3 2 15 15 C 1.50700 * 120.00407 * 183.46827 * 13 3 2 16 16 H 1.08993 * 110.01602 * 304.84615 * 15 13 3 17 17 C 1.54274 * 110.03048 * 66.22883 * 15 13 3 18 18 C 1.54893 * 104.19488 * 95.72463 * 17 15 13 19 19 C 1.54889 * 102.74390 * 37.94183 * 18 17 15 20 20 C 1.53867 * 110.07610 * 183.41821 * 15 13 3 21 21 H 1.09000 * 110.02978 * 359.97438 * 20 15 13 22 22 C 1.50705 * 110.03216 * 121.40921 * 20 15 13 23 23 O 1.20823 * 119.99709 * 0.02562 * 22 20 15 24 24 O 1.34228 * 120.00459 * 180.02562 * 22 20 15 25 25 H 1.08998 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47539 * 299.99847 * 1 2 3 27 27 H 1.09005 * 109.47235 * 59.99857 * 1 2 3 28 28 H 1.09008 * 109.47100 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.46980 * 119.99805 * 2 1 3 30 30 H 1.09002 * 109.46829 * 24.41118 * 4 3 2 31 31 H 1.09000 * 109.47043 * 144.41084 * 4 3 2 32 32 H 0.97006 * 119.99406 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.48576 * 214.40590 * 17 15 13 34 34 H 1.09005 * 110.48427 * 337.05027 * 17 15 13 35 35 H 1.09000 * 110.75627 * 156.25809 * 18 17 15 36 36 H 1.08996 * 110.75334 * 279.62807 * 18 17 15 37 37 H 1.09003 * 110.47995 * 203.37570 * 19 18 17 38 38 H 1.09000 * 110.48705 * 80.74228 * 19 18 17 39 39 H 0.96692 * 117.00158 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1690 2.1049 -1.2649 5 6 3.5948 1.9942 -1.7401 6 1 4.3165 1.4399 -1.1584 7 6 3.9778 2.5998 -2.9181 8 7 3.0989 3.2743 -3.6267 9 14 5.7453 2.4632 -3.5069 10 1 5.8889 1.2616 -4.3675 11 1 6.1026 3.6758 -4.2861 12 1 6.6495 2.3437 -2.3350 13 6 2.3289 1.9862 1.1636 14 8 2.2644 1.3675 2.2048 15 6 2.7565 3.4312 1.1710 16 1 3.6038 3.5730 0.5003 17 6 1.5819 4.3320 0.7362 18 6 0.9452 4.7960 2.0698 19 6 2.1790 5.0101 2.9813 20 6 3.1360 3.8624 2.5984 21 1 3.0107 3.0266 3.2867 22 6 4.5624 4.3478 2.6290 23 8 5.2204 4.3535 1.6156 24 8 5.1020 4.7737 3.7819 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5024 1.6736 -2.0118 31 1 1.9162 3.1546 -1.1153 32 1 3.3683 3.7000 -4.4557 33 1 1.9474 5.1885 0.1696 34 1 0.8623 3.7629 0.1476 35 1 0.3992 5.7295 1.9330 36 1 0.2940 4.0224 2.4766 37 1 1.8952 4.9360 4.0311 38 1 2.6409 5.9761 2.7774 39 1 6.0202 5.0752 3.7519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127958188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:55 Heat of formation + Delta-G solvation = -143.684015 kcal Electronic energy + Delta-G solvation = -22040.069125 eV Core-core repulsion = 18753.990266 eV Total energy + Delta-G solvation = -3286.078859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58332 -39.21001 -36.74431 -35.80103 -35.21137 -32.73920 -30.84849 -29.33480 -28.47236 -26.97847 -23.68649 -23.05606 -22.46716 -20.75105 -19.85722 -18.09592 -17.73248 -17.04063 -16.44602 -15.87563 -15.63147 -15.27808 -14.74304 -14.43805 -14.13672 -13.82682 -13.30273 -12.93051 -12.69672 -12.37955 -12.15408 -11.82068 -11.62914 -11.49978 -11.45719 -11.16035 -10.99223 -10.90329 -10.82307 -10.63762 -10.54996 -10.46496 -10.42104 -10.05440 -10.00405 -9.64659 -8.96126 -8.48678 -7.70742 -6.13624 -4.19525 2.48888 3.20170 3.28069 3.34699 3.37765 3.44908 3.97561 4.40197 4.62839 4.80139 5.09359 5.21361 5.40598 5.52546 5.64178 5.68376 5.69872 5.75896 5.82007 5.88357 5.91333 6.00215 6.12793 6.19482 6.26103 6.41391 6.43785 6.53600 6.62203 6.63921 6.76108 6.85595 7.22959 7.56857 7.82108 8.11026 8.13393 8.34647 8.83492 9.02302 9.48193 10.93124 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.008519 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.107866 B = 3286.076770 C = 4397.864727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.592 5.592 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.528 3.472 14 O -0.580 6.580 15 C -0.108 4.108 16 H 0.137 0.863 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.105 4.105 20 C -0.080 4.080 21 H 0.131 0.869 22 C 0.480 3.520 23 O -0.501 6.501 24 O -0.519 6.519 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 2.931 10.361 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.321 5.321 4 C 0.109 3.891 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.316 3.684 14 O -0.462 6.462 15 C -0.129 4.129 16 H 0.154 0.846 17 C -0.147 4.147 18 C -0.163 4.163 19 C -0.143 4.143 20 C -0.100 4.100 21 H 0.148 0.852 22 C 0.322 3.678 23 O -0.388 6.388 24 O -0.331 6.331 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.702 2.574 10.398 11.334 hybrid contribution 1.763 0.115 -0.692 1.898 sum -1.939 2.688 9.706 10.256 Atomic orbital electron populations 1.22110 0.96810 1.01230 1.01910 1.21266 0.93404 0.84004 1.02539 1.48160 1.62469 1.13370 1.08107 1.19652 0.97293 0.92982 0.79215 1.21480 0.95136 1.33784 1.06960 0.92237 1.24891 0.97665 0.94740 0.96269 1.69917 1.34087 1.33920 1.15110 0.86538 0.84886 0.77525 0.78884 1.20647 1.21050 1.19620 1.20170 0.76192 0.88724 0.83266 1.90532 1.56487 1.66853 1.32360 1.21882 1.02352 0.92828 0.95836 0.84563 1.22396 0.96135 0.99189 0.96949 1.22572 0.96871 1.01301 0.95543 1.22268 0.95068 0.96645 1.00303 1.21658 0.87132 1.00931 1.00243 0.85155 1.23534 0.90441 0.73498 0.80301 1.90768 1.62684 1.50586 1.34738 1.84539 1.34156 1.76715 1.37698 0.92425 0.92961 0.92465 0.90716 0.90849 0.94621 0.93300 0.92618 0.90261 0.90095 0.91027 0.91133 0.90512 0.91303 0.73783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 2.07 6.18 -4.04 -0.02 2.04 16 3 N -0.59 -12.59 2.43 -175.05 -0.42 -13.01 16 4 C 0.23 5.42 4.63 -5.19 -0.02 5.39 16 5 C -0.54 -14.32 8.75 -34.44 -0.30 -14.62 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.53 11.15 6.86 -10.99 -0.08 11.07 16 14 O -0.58 -12.87 14.71 5.55 0.08 -12.78 16 15 C -0.11 -2.08 2.07 -90.65 -0.19 -2.26 16 16 H 0.14 3.10 5.65 -51.93 -0.29 2.80 16 17 C -0.11 -1.81 5.00 -25.07 -0.13 -1.94 16 18 C -0.13 -1.66 6.91 -24.74 -0.17 -1.83 16 19 C -0.11 -1.37 6.34 -25.08 -0.16 -1.53 16 20 C -0.08 -1.32 3.00 -90.66 -0.27 -1.59 16 21 H 0.13 2.25 6.40 -51.93 -0.33 1.91 16 22 C 0.48 7.99 7.47 36.01 0.27 8.26 16 23 O -0.50 -10.25 15.97 -18.75 -0.30 -10.55 16 24 O -0.52 -6.58 13.41 -39.25 -0.53 -7.11 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.38 8.11 -51.92 -0.42 0.95 16 29 H 0.07 1.38 7.25 -51.93 -0.38 1.00 16 30 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 31 H 0.05 1.17 4.67 -51.93 -0.24 0.93 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.41 6.29 -51.93 -0.33 1.08 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 39 H 0.40 3.35 9.10 45.56 0.41 3.77 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -31.45 320.02 -6.33 -37.77 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.91 Total: 5.85 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.79 Total: 2.58 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.31 Total: -37.08 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.74 Total: -30.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.45 -6.33 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.912 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds