Wall clock time and date at job start Mon Mar 30 2020 04:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47194 * 2 1 4 4 C 1.46507 * 119.99949 * 274.48507 * 3 2 1 5 5 C 1.50703 * 109.46524 * 264.41052 * 4 3 2 6 6 H 1.08000 * 120.00417 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99552 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46896 * 90.00037 * 9 7 5 11 11 H 1.48495 * 109.47261 * 210.00085 * 9 7 5 12 12 H 1.48498 * 109.46849 * 330.00307 * 9 7 5 13 13 C 1.34774 * 120.00184 * 94.47939 * 3 2 1 14 14 O 1.21284 * 119.99763 * 3.47350 * 13 3 2 15 15 C 1.50700 * 120.00407 * 183.46827 * 13 3 2 16 16 H 1.08993 * 110.01602 * 304.84615 * 15 13 3 17 17 C 1.54274 * 110.03048 * 66.22883 * 15 13 3 18 18 C 1.54893 * 104.19488 * 95.72463 * 17 15 13 19 19 C 1.54889 * 102.74390 * 37.94183 * 18 17 15 20 20 C 1.53867 * 110.07610 * 183.41821 * 15 13 3 21 21 H 1.09000 * 110.02978 * 359.97438 * 20 15 13 22 22 C 1.50705 * 110.03216 * 121.40921 * 20 15 13 23 23 O 1.20823 * 119.99709 * 0.02562 * 22 20 15 24 24 O 1.34228 * 120.00459 * 180.02562 * 22 20 15 25 25 H 1.08998 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47539 * 299.99847 * 1 2 3 27 27 H 1.09005 * 109.47235 * 59.99857 * 1 2 3 28 28 H 1.09008 * 109.47100 * 239.99987 * 2 1 3 29 29 H 1.08998 * 109.46980 * 119.99805 * 2 1 3 30 30 H 1.09002 * 109.46829 * 24.41118 * 4 3 2 31 31 H 1.09000 * 109.47043 * 144.41084 * 4 3 2 32 32 H 0.97006 * 119.99406 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.48576 * 214.40590 * 17 15 13 34 34 H 1.09005 * 110.48427 * 337.05027 * 17 15 13 35 35 H 1.09000 * 110.75627 * 156.25809 * 18 17 15 36 36 H 1.08996 * 110.75334 * 279.62807 * 18 17 15 37 37 H 1.09003 * 110.47995 * 203.37570 * 19 18 17 38 38 H 1.09000 * 110.48705 * 80.74228 * 19 18 17 39 39 H 0.96692 * 117.00158 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1690 2.1049 -1.2649 5 6 3.5948 1.9942 -1.7401 6 1 4.3165 1.4399 -1.1584 7 6 3.9778 2.5998 -2.9181 8 7 3.0989 3.2743 -3.6267 9 14 5.7453 2.4632 -3.5069 10 1 5.8889 1.2616 -4.3675 11 1 6.1026 3.6758 -4.2861 12 1 6.6495 2.3437 -2.3350 13 6 2.3289 1.9862 1.1636 14 8 2.2644 1.3675 2.2048 15 6 2.7565 3.4312 1.1710 16 1 3.6038 3.5730 0.5003 17 6 1.5819 4.3320 0.7362 18 6 0.9452 4.7960 2.0698 19 6 2.1790 5.0101 2.9813 20 6 3.1360 3.8624 2.5984 21 1 3.0107 3.0266 3.2867 22 6 4.5624 4.3478 2.6290 23 8 5.2204 4.3535 1.6156 24 8 5.1020 4.7737 3.7819 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5024 1.6736 -2.0118 31 1 1.9162 3.1546 -1.1153 32 1 3.3683 3.7000 -4.4557 33 1 1.9474 5.1885 0.1696 34 1 0.8623 3.7629 0.1476 35 1 0.3992 5.7295 1.9330 36 1 0.2940 4.0224 2.4766 37 1 1.8952 4.9360 4.0311 38 1 2.6409 5.9761 2.7774 39 1 6.0202 5.0752 3.7519 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127958188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:55 Heat of formation + Delta-G solvation = -163.635921 kcal Electronic energy + Delta-G solvation = -22040.934305 eV Core-core repulsion = 18753.990266 eV Total energy + Delta-G solvation = -3286.944039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98185 -40.71681 -38.06188 -37.07627 -36.94831 -34.73429 -32.37303 -30.60039 -29.85976 -28.88090 -25.22410 -24.81389 -23.86382 -21.96295 -21.21586 -19.57739 -19.21910 -18.68978 -18.15066 -17.40856 -17.20370 -16.72903 -16.27268 -16.21923 -15.56317 -15.15152 -14.71790 -14.40961 -14.21960 -14.08083 -13.66616 -13.34575 -13.15873 -13.10307 -12.76049 -12.68075 -12.64806 -12.46241 -12.27940 -12.20344 -11.97311 -11.89865 -11.79492 -11.69412 -11.53817 -11.36434 -10.70934 -10.48570 -9.48062 -8.22567 -6.34579 1.18044 1.34818 1.37797 1.47405 1.72327 1.98435 2.34074 2.46475 3.07779 3.34260 3.56537 3.73830 4.09411 4.26203 4.31843 4.39391 4.42477 4.45902 4.54531 4.58161 4.73665 4.79976 4.83429 4.95959 4.98776 5.04370 5.10220 5.15971 5.19852 5.28884 5.33341 5.38974 5.59663 5.64069 5.86175 6.06761 6.53146 6.79883 6.98271 7.27059 7.39065 8.82673 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.008519 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.107866 B = 3286.076770 C = 4397.864727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 N -0.597 5.597 4 C 0.244 3.756 5 C -0.546 4.546 6 H 0.040 0.960 7 C 0.027 3.973 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.523 3.477 14 O -0.592 6.592 15 C -0.110 4.110 16 H 0.098 0.902 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.081 4.081 21 H 0.124 0.876 22 C 0.488 3.512 23 O -0.548 6.548 24 O -0.502 6.502 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 3.600 11.521 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.124 3.876 5 C -0.584 4.584 6 H 0.058 0.942 7 C -0.173 4.173 8 N -0.552 5.552 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.312 3.688 14 O -0.476 6.476 15 C -0.131 4.131 16 H 0.116 0.884 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.134 4.134 20 C -0.101 4.101 21 H 0.142 0.858 22 C 0.332 3.668 23 O -0.438 6.438 24 O -0.315 6.315 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.255 3.239 11.586 12.761 hybrid contribution 1.981 -0.131 -0.995 2.221 sum -2.274 3.108 10.591 11.270 Atomic orbital electron populations 1.22000 0.94147 1.03124 1.01528 1.21469 0.95620 0.82598 1.02230 1.48193 1.62728 1.14308 1.07407 1.19302 0.95367 0.93085 0.79870 1.21626 0.96214 1.33582 1.07015 0.94164 1.25500 1.00818 0.94566 0.96450 1.69974 1.35386 1.34383 1.15468 0.85731 0.80839 0.78110 0.78092 1.19499 1.20151 1.20787 1.20527 0.75774 0.89527 0.82931 1.90508 1.57127 1.67386 1.32540 1.21837 1.01864 0.92233 0.97198 0.88410 1.22380 0.95096 0.98310 0.98905 1.22549 0.96966 1.02602 0.93032 1.22318 0.93794 0.95501 1.01749 1.21670 0.88139 1.02176 0.98080 0.85826 1.23544 0.90335 0.72605 0.80355 1.90762 1.63734 1.52795 1.36557 1.84478 1.35869 1.75830 1.35365 0.89400 0.93238 0.92821 0.91001 0.91127 0.95750 0.93462 0.92276 0.90688 0.91416 0.88101 0.90974 0.87780 0.90163 0.71286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 10.24 71.98 0.74 -3.77 16 2 C 0.10 3.86 6.18 86.38 0.53 4.39 16 3 N -0.60 -25.93 2.43 -826.13 -2.00 -27.93 16 4 C 0.24 11.93 4.63 85.63 0.40 12.32 16 5 C -0.55 -30.02 8.75 25.60 0.22 -29.79 16 6 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 7 C 0.03 1.51 5.46 84.66 0.46 1.97 16 8 N -0.91 -51.15 13.29 21.45 0.28 -50.87 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 13 C 0.52 22.43 6.86 87.66 0.60 23.03 16 14 O -0.59 -26.33 14.71 -3.04 -0.04 -26.38 16 15 C -0.11 -4.30 2.07 -10.82 -0.02 -4.32 16 16 H 0.10 4.65 5.65 -2.39 -0.01 4.64 16 17 C -0.11 -3.60 5.00 31.67 0.16 -3.44 16 18 C -0.11 -2.73 6.91 31.89 0.22 -2.51 16 19 C -0.10 -2.23 6.34 31.67 0.20 -2.03 16 20 C -0.08 -2.60 3.00 -10.82 -0.03 -2.63 16 21 H 0.12 4.16 6.40 -2.39 -0.02 4.14 16 22 C 0.49 15.91 7.47 71.24 0.53 16.44 16 23 O -0.55 -22.82 15.97 21.97 0.35 -22.47 16 24 O -0.50 -11.65 13.41 -51.39 -0.69 -12.34 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.07 2.68 8.11 -2.38 -0.02 2.66 16 29 H 0.07 2.65 7.25 -2.39 -0.02 2.64 16 30 H 0.02 1.24 8.03 -2.39 -0.02 1.22 16 31 H 0.05 2.33 4.67 -2.39 -0.01 2.32 16 32 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 2.38 6.29 -2.38 -0.01 2.37 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 1.70 7.85 -2.39 -0.02 1.68 16 39 H 0.43 6.10 9.10 -74.06 -0.67 5.43 16 Total: -1.00 -68.43 320.02 4.32 -64.11 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.39 Total: 19.64 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.01 Total: 9.65 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.72 Total: -78.80 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -0.38 Total: -61.19 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.43 4.32 -64.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.528 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds