Wall clock time and date at job start Mon Mar 30 2020 04:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47305 * 2 1 4 4 C 1.46502 * 120.00008 * 266.36465 * 3 2 1 5 5 C 1.50701 * 109.47501 * 270.00333 * 4 3 2 6 6 H 1.08008 * 119.99741 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00138 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00004 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99847 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47317 * 59.99610 * 9 7 5 11 11 H 1.48506 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47150 * 299.99665 * 9 7 5 13 13 C 1.34773 * 120.00004 * 86.36577 * 3 2 1 14 14 O 1.21282 * 120.00293 * 4.67857 * 13 3 2 15 15 C 1.50698 * 120.00021 * 184.67233 * 13 3 2 16 16 H 1.09002 * 110.43461 * 33.20531 * 15 13 3 17 17 C 1.54891 * 110.48839 * 270.52309 * 15 13 3 18 18 C 1.54901 * 102.74681 * 203.37669 * 17 15 13 19 19 C 1.54270 * 104.19325 * 37.94359 * 18 17 15 20 20 C 1.53870 * 106.59741 * 336.38627 * 19 18 17 21 21 H 1.09005 * 110.03488 * 119.28747 * 20 19 18 22 22 C 1.50707 * 110.03423 * 240.71786 * 20 19 18 23 23 O 1.20826 * 120.00236 * 118.54835 * 22 20 19 24 24 O 1.34226 * 119.99908 * 298.55000 * 22 20 19 25 25 H 1.08999 * 109.47061 * 295.81182 * 1 2 3 26 26 H 1.09001 * 109.47128 * 55.81609 * 1 2 3 27 27 H 1.09004 * 109.47504 * 175.81414 * 1 2 3 28 28 H 1.09003 * 109.47040 * 239.99881 * 2 1 3 29 29 H 1.08997 * 109.47052 * 120.00447 * 2 1 3 30 30 H 1.09008 * 109.47177 * 30.00110 * 4 3 2 31 31 H 1.08993 * 109.47023 * 149.99729 * 4 3 2 32 32 H 0.97006 * 119.99713 * 180.02562 * 8 7 5 33 33 H 1.08995 * 110.75533 * 321.68963 * 17 15 13 34 34 H 1.08992 * 110.75926 * 84.87988 * 17 15 13 35 35 H 1.08998 * 110.48404 * 279.26368 * 18 17 15 36 36 H 1.09002 * 110.48133 * 156.61535 * 18 17 15 37 37 H 1.09002 * 110.02823 * 217.10937 * 19 18 17 38 38 H 1.08997 * 110.03604 * 95.67170 * 19 18 17 39 39 H 0.96701 * 117.00304 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3384 2.0449 -1.2662 5 6 3.7849 1.7998 -1.6104 6 1 4.4041 1.2090 -0.9516 7 6 4.3182 2.3307 -2.7657 8 7 3.5643 3.0505 -3.5677 9 14 6.1114 2.0274 -3.1919 10 1 6.3486 0.5675 -3.3250 11 1 6.4358 2.7002 -4.4755 12 1 6.9754 2.5730 -2.1144 13 6 2.1732 2.0411 1.1648 14 8 1.9900 1.4660 2.2168 15 6 2.5742 3.4938 1.1602 16 1 2.1542 4.0018 0.2921 17 6 4.1170 3.6304 1.1780 18 6 4.3279 5.0459 1.7709 19 6 3.2332 5.1706 2.8508 20 6 2.1182 4.1839 2.4624 21 1 1.9842 3.4428 3.2505 22 6 0.8288 4.9280 2.2281 23 8 0.3017 4.8960 1.1413 24 8 0.2660 5.6264 3.2266 25 1 -0.3633 0.4475 0.9251 26 1 -0.3633 0.5774 -0.8501 27 1 -0.3634 -1.0249 -0.0750 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7039 1.6444 -2.0570 31 1 2.1646 3.1165 -1.1687 32 1 3.9395 3.4236 -4.3807 33 1 4.5645 2.8720 1.8203 34 1 4.5220 3.5673 0.1682 35 1 4.1930 5.8058 1.0013 36 1 5.3177 5.1276 2.2200 37 1 2.8417 6.1878 2.8696 38 1 3.6403 4.9085 3.8273 39 1 -0.5606 6.0876 3.0284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127958405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:57 Heat of formation + Delta-G solvation = -146.735414 kcal Electronic energy + Delta-G solvation = -22014.199141 eV Core-core repulsion = 18727.987963 eV Total energy + Delta-G solvation = -3286.211178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57307 -39.12664 -36.81488 -35.87406 -35.13306 -32.76498 -30.79339 -29.33868 -28.52631 -26.95825 -23.64562 -22.99870 -22.52713 -20.57774 -19.95746 -18.14138 -17.69870 -17.14490 -16.44567 -16.00798 -15.65228 -15.20776 -14.53008 -14.45915 -14.34896 -13.62625 -13.20456 -12.94830 -12.78611 -12.42284 -12.13350 -11.72926 -11.66342 -11.55647 -11.44201 -11.27411 -10.94816 -10.88200 -10.85083 -10.69783 -10.55928 -10.45058 -10.29284 -10.06281 -10.03071 -9.71353 -8.97582 -8.51389 -7.68378 -6.15807 -4.22968 2.41702 3.16712 3.23941 3.29751 3.30687 3.40063 3.96396 4.34257 4.64073 4.87177 5.10930 5.16667 5.44946 5.51071 5.69034 5.69909 5.74144 5.83506 5.87011 5.90169 5.92560 5.93737 6.12117 6.24711 6.29174 6.41160 6.45748 6.60565 6.66226 6.69383 6.83743 6.87606 7.28328 7.58399 7.78621 8.06203 8.08795 8.37727 8.81255 9.03444 9.43584 10.90691 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.007529 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.721452 B = 3718.003746 C = 4556.754468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.590 5.590 4 C 0.235 3.765 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.527 3.473 14 O -0.581 6.581 15 C -0.097 4.097 16 H 0.119 0.881 17 C -0.106 4.106 18 C -0.125 4.125 19 C -0.108 4.108 20 C -0.079 4.079 21 H 0.126 0.874 22 C 0.482 3.518 23 O -0.507 6.507 24 O -0.519 6.519 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 3.717 9.761 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.319 5.319 4 C 0.115 3.885 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.315 3.685 14 O -0.464 6.464 15 C -0.118 4.118 16 H 0.136 0.864 17 C -0.144 4.144 18 C -0.162 4.162 19 C -0.146 4.146 20 C -0.098 4.098 21 H 0.144 0.856 22 C 0.325 3.675 23 O -0.394 6.394 24 O -0.330 6.330 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.209 3.296 9.852 10.621 hybrid contribution 0.281 0.163 -0.666 0.741 sum -1.928 3.459 9.186 10.003 Atomic orbital electron populations 1.22113 0.96954 1.01160 1.01945 1.21234 0.93300 0.83930 1.02418 1.48189 1.62296 1.13224 1.08150 1.19501 0.96107 0.93623 0.79253 1.21434 0.95484 1.33487 1.06930 0.92083 1.24929 0.98028 0.94857 0.95934 1.69926 1.36063 1.33840 1.12881 0.86624 0.84883 0.78572 0.77799 1.20200 1.21201 1.19981 1.20165 0.76285 0.88612 0.83441 1.90547 1.54546 1.69718 1.31545 1.22062 0.98447 0.93609 0.97657 0.86353 1.22472 0.92184 0.95912 1.03845 1.22412 0.98090 0.98068 0.97645 1.22084 0.94527 0.98021 0.99942 1.21703 0.89137 0.97660 1.01338 0.85591 1.23592 0.86458 0.76045 0.81447 1.90739 1.63105 1.59666 1.25914 1.84545 1.42437 1.62278 1.43788 0.92997 0.92527 0.92425 0.90376 0.91256 0.94772 0.93913 0.92481 0.91415 0.87852 0.91145 0.91113 0.91351 0.90464 0.73749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.22 37.16 0.38 -2.39 16 2 C 0.11 2.20 6.13 -4.05 -0.02 2.18 16 3 N -0.59 -12.87 2.46 -175.06 -0.43 -13.30 16 4 C 0.23 5.68 5.03 -5.19 -0.03 5.66 16 5 C -0.53 -13.63 8.10 -34.44 -0.28 -13.91 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 9 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.53 11.30 6.81 -10.99 -0.07 11.22 16 14 O -0.58 -13.13 15.21 5.56 0.08 -13.05 16 15 C -0.10 -1.84 1.82 -90.11 -0.16 -2.01 16 16 H 0.12 2.51 4.91 -51.93 -0.26 2.25 16 17 C -0.11 -1.86 6.26 -24.73 -0.15 -2.02 16 18 C -0.12 -1.73 6.83 -25.06 -0.17 -1.90 16 19 C -0.11 -1.40 6.42 -25.61 -0.16 -1.57 16 20 C -0.08 -1.27 2.92 -90.65 -0.27 -1.53 16 21 H 0.13 2.10 6.79 -51.93 -0.35 1.75 16 22 C 0.48 7.74 7.39 36.01 0.27 8.01 16 23 O -0.51 -9.83 16.17 -18.75 -0.30 -10.13 16 24 O -0.52 -6.31 13.35 -39.25 -0.52 -6.83 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 29 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 30 H 0.03 0.87 8.07 -51.92 -0.42 0.46 16 31 H 0.04 1.09 5.80 -51.93 -0.30 0.79 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.07 1.17 8.05 -51.93 -0.42 0.76 16 34 H 0.10 2.05 6.87 -51.93 -0.36 1.70 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 3.12 9.10 45.56 0.41 3.53 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -30.54 322.45 -6.35 -36.89 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.97 Total: 6.67 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.78 Total: 3.36 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.31 Total: -36.95 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.74 Total: -30.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.54 -6.35 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.847 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds