Wall clock time and date at job start Mon Mar 30 2020 04:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47305 * 2 1 4 4 C 1.46502 * 120.00008 * 266.36465 * 3 2 1 5 5 C 1.50701 * 109.47501 * 270.00333 * 4 3 2 6 6 H 1.08008 * 119.99741 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00138 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00004 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99847 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47317 * 59.99610 * 9 7 5 11 11 H 1.48506 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47150 * 299.99665 * 9 7 5 13 13 C 1.34773 * 120.00004 * 86.36577 * 3 2 1 14 14 O 1.21282 * 120.00293 * 4.67857 * 13 3 2 15 15 C 1.50698 * 120.00021 * 184.67233 * 13 3 2 16 16 H 1.09002 * 110.43461 * 33.20531 * 15 13 3 17 17 C 1.54891 * 110.48839 * 270.52309 * 15 13 3 18 18 C 1.54901 * 102.74681 * 203.37669 * 17 15 13 19 19 C 1.54270 * 104.19325 * 37.94359 * 18 17 15 20 20 C 1.53870 * 106.59741 * 336.38627 * 19 18 17 21 21 H 1.09005 * 110.03488 * 119.28747 * 20 19 18 22 22 C 1.50707 * 110.03423 * 240.71786 * 20 19 18 23 23 O 1.20826 * 120.00236 * 118.54835 * 22 20 19 24 24 O 1.34226 * 119.99908 * 298.55000 * 22 20 19 25 25 H 1.08999 * 109.47061 * 295.81182 * 1 2 3 26 26 H 1.09001 * 109.47128 * 55.81609 * 1 2 3 27 27 H 1.09004 * 109.47504 * 175.81414 * 1 2 3 28 28 H 1.09003 * 109.47040 * 239.99881 * 2 1 3 29 29 H 1.08997 * 109.47052 * 120.00447 * 2 1 3 30 30 H 1.09008 * 109.47177 * 30.00110 * 4 3 2 31 31 H 1.08993 * 109.47023 * 149.99729 * 4 3 2 32 32 H 0.97006 * 119.99713 * 180.02562 * 8 7 5 33 33 H 1.08995 * 110.75533 * 321.68963 * 17 15 13 34 34 H 1.08992 * 110.75926 * 84.87988 * 17 15 13 35 35 H 1.08998 * 110.48404 * 279.26368 * 18 17 15 36 36 H 1.09002 * 110.48133 * 156.61535 * 18 17 15 37 37 H 1.09002 * 110.02823 * 217.10937 * 19 18 17 38 38 H 1.08997 * 110.03604 * 95.67170 * 19 18 17 39 39 H 0.96701 * 117.00304 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3384 2.0449 -1.2662 5 6 3.7849 1.7998 -1.6104 6 1 4.4041 1.2090 -0.9516 7 6 4.3182 2.3307 -2.7657 8 7 3.5643 3.0505 -3.5677 9 14 6.1114 2.0274 -3.1919 10 1 6.3486 0.5675 -3.3250 11 1 6.4358 2.7002 -4.4755 12 1 6.9754 2.5730 -2.1144 13 6 2.1732 2.0411 1.1648 14 8 1.9900 1.4660 2.2168 15 6 2.5742 3.4938 1.1602 16 1 2.1542 4.0018 0.2921 17 6 4.1170 3.6304 1.1780 18 6 4.3279 5.0459 1.7709 19 6 3.2332 5.1706 2.8508 20 6 2.1182 4.1839 2.4624 21 1 1.9842 3.4428 3.2505 22 6 0.8288 4.9280 2.2281 23 8 0.3017 4.8960 1.1413 24 8 0.2660 5.6264 3.2266 25 1 -0.3633 0.4475 0.9251 26 1 -0.3633 0.5774 -0.8501 27 1 -0.3634 -1.0249 -0.0750 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7039 1.6444 -2.0570 31 1 2.1646 3.1165 -1.1687 32 1 3.9395 3.4236 -4.3807 33 1 4.5645 2.8720 1.8203 34 1 4.5220 3.5673 0.1682 35 1 4.1930 5.8058 1.0013 36 1 5.3177 5.1276 2.2200 37 1 2.8417 6.1878 2.8696 38 1 3.6403 4.9085 3.8273 39 1 -0.5606 6.0876 3.0284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127958405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:57 Heat of formation + Delta-G solvation = -165.783935 kcal Electronic energy + Delta-G solvation = -22015.025146 eV Core-core repulsion = 18727.987963 eV Total energy + Delta-G solvation = -3287.037184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93629 -40.65758 -38.14432 -37.09219 -36.90372 -34.71252 -32.38250 -30.61255 -29.94245 -28.85972 -25.03911 -24.94762 -23.90267 -21.87638 -21.26467 -19.70573 -19.04140 -18.59813 -18.39465 -17.50891 -17.18861 -16.65349 -16.31328 -15.99682 -15.60534 -15.16394 -14.60882 -14.36095 -14.27767 -14.17037 -13.69485 -13.29350 -13.18675 -13.13356 -12.80996 -12.68560 -12.61684 -12.54411 -12.21826 -12.17384 -12.00630 -11.85105 -11.78729 -11.76408 -11.58558 -11.25500 -10.72252 -10.48784 -9.48598 -8.17458 -6.31867 1.15939 1.44446 1.44898 1.52842 1.70060 2.00763 2.31499 2.47317 3.12486 3.33963 3.54825 3.82934 4.05694 4.24238 4.34512 4.35712 4.43412 4.45789 4.50018 4.51219 4.57338 4.76242 4.79185 4.91943 4.98338 5.02587 5.10165 5.18888 5.22536 5.29052 5.35705 5.44054 5.56841 5.67133 5.84621 6.06857 6.55300 6.81607 6.96523 7.27085 7.40872 8.88538 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.007529 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.721452 B = 3718.003746 C = 4556.754468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.253 3.747 5 C -0.536 4.536 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.922 5.922 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.520 3.480 14 O -0.594 6.594 15 C -0.099 4.099 16 H 0.092 0.908 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.099 4.099 20 C -0.079 4.079 21 H 0.123 0.877 22 C 0.489 3.511 23 O -0.549 6.549 24 O -0.502 6.502 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.267 0.733 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.395 4.155 11.264 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.327 5.327 4 C 0.132 3.868 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.310 3.690 14 O -0.477 6.477 15 C -0.120 4.120 16 H 0.110 0.890 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.136 4.136 20 C -0.098 4.098 21 H 0.141 0.859 22 C 0.332 3.668 23 O -0.440 6.440 24 O -0.315 6.315 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.294 3.740 11.393 12.061 hybrid contribution -0.092 0.008 -1.091 1.095 sum -1.386 3.748 10.302 11.049 Atomic orbital electron populations 1.22018 0.95075 1.03092 1.00874 1.21427 0.94885 0.82676 1.02535 1.48254 1.62635 1.14243 1.07546 1.19097 0.95335 0.92597 0.79731 1.21530 0.95865 1.33169 1.06889 0.92556 1.25652 1.01919 0.94472 0.95747 1.70037 1.37871 1.34813 1.13346 0.85650 0.80176 0.78456 0.77706 1.19864 1.20949 1.18941 1.20622 0.75763 0.89635 0.83004 1.90521 1.55195 1.70364 1.31665 1.22023 0.99547 0.91914 0.98495 0.89009 1.22408 0.90781 0.98659 1.02450 1.22402 1.00060 0.95124 0.97847 1.22115 0.92873 0.97979 1.00628 1.21690 0.90570 0.98307 0.99228 0.85914 1.23549 0.86237 0.75749 0.81217 1.90738 1.64177 1.61366 1.27711 1.84479 1.43575 1.61550 1.41936 0.94077 0.93454 0.88982 0.90193 0.91082 0.96738 0.95762 0.92394 0.91350 0.90844 0.91461 0.88298 0.89648 0.87820 0.71193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 10.22 71.98 0.74 -4.38 16 2 C 0.11 4.16 6.13 86.38 0.53 4.69 16 3 N -0.60 -26.82 2.46 -826.17 -2.03 -28.85 16 4 C 0.25 12.74 5.03 85.63 0.43 13.17 16 5 C -0.54 -27.90 8.10 25.60 0.21 -27.70 16 6 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.02 1.18 5.46 84.65 0.46 1.64 16 8 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 9 Si 0.96 41.39 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 C 0.52 22.73 6.81 87.66 0.60 23.33 16 14 O -0.59 -26.90 15.21 -3.04 -0.05 -26.94 16 15 C -0.10 -3.82 1.82 -10.47 -0.02 -3.84 16 16 H 0.09 4.08 4.91 -2.39 -0.01 4.07 16 17 C -0.10 -3.66 6.26 31.89 0.20 -3.46 16 18 C -0.12 -3.00 6.83 31.67 0.22 -2.78 16 19 C -0.10 -2.27 6.42 31.32 0.20 -2.07 16 20 C -0.08 -2.44 2.92 -10.82 -0.03 -2.47 16 21 H 0.12 3.94 6.79 -2.38 -0.02 3.92 16 22 C 0.49 15.22 7.39 71.24 0.53 15.75 16 23 O -0.55 -21.57 16.17 21.96 0.36 -21.22 16 24 O -0.50 -10.99 13.35 -51.37 -0.69 -11.68 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.08 3.02 8.04 -2.39 -0.02 3.00 16 29 H 0.07 2.71 7.47 -2.39 -0.02 2.70 16 30 H 0.01 0.78 8.07 -2.38 -0.02 0.76 16 31 H 0.02 1.32 5.80 -2.39 -0.01 1.31 16 32 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 33 H 0.07 2.33 8.05 -2.39 -0.02 2.32 16 34 H 0.07 2.99 6.87 -2.39 -0.02 2.97 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.72 7.63 -2.39 -0.02 1.70 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.43 5.50 9.10 -74.06 -0.67 4.83 16 Total: -1.00 -66.65 322.45 4.34 -62.31 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.38 Total: 22.30 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 4.05 Total: 11.89 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.75 Total: -80.08 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -0.38 Total: -59.84 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -66.65 4.34 -62.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.473 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds