Wall clock time and date at job start Mon Mar 30 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46644 * 2 1 4 4 C 1.46496 * 120.00188 * 264.41255 * 3 2 1 5 5 C 1.50696 * 109.47390 * 269.99913 * 4 3 2 6 6 H 1.08003 * 120.00108 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00153 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99717 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47100 * 90.00126 * 9 7 5 11 11 H 1.48493 * 109.47070 * 210.00193 * 9 7 5 12 12 H 1.48503 * 109.47108 * 330.00323 * 9 7 5 13 13 C 1.34782 * 119.99804 * 84.41884 * 3 2 1 14 14 O 1.21281 * 119.99920 * 184.40809 * 13 3 2 15 15 C 1.50698 * 120.00240 * 4.39745 * 13 3 2 16 16 H 1.08998 * 110.05329 * 6.68825 * 15 13 3 17 17 C 1.54268 * 110.03206 * 128.09747 * 15 13 3 18 18 C 1.54888 * 104.19440 * 142.89590 * 17 15 13 19 19 C 1.54887 * 102.75092 * 322.06051 * 18 17 15 20 20 C 1.53873 * 110.03459 * 245.26824 * 15 13 3 21 21 H 1.08999 * 110.07236 * 121.40965 * 20 15 13 22 22 C 1.50696 * 110.03342 * 0.02562 * 20 15 13 23 23 O 1.20829 * 119.99416 * 267.74337 * 22 20 15 24 24 O 1.34222 * 120.00501 * 87.74169 * 22 20 15 25 25 H 1.09008 * 109.46390 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99482 * 1 2 3 27 27 H 1.08999 * 109.47391 * 60.00384 * 1 2 3 28 28 H 1.08999 * 109.47301 * 240.00517 * 2 1 3 29 29 H 1.08999 * 109.47391 * 119.99616 * 2 1 3 30 30 H 1.08994 * 109.47046 * 30.00418 * 4 3 2 31 31 H 1.09005 * 109.46929 * 150.00452 * 4 3 2 32 32 H 0.97003 * 119.99725 * 179.97438 * 8 7 5 33 33 H 1.09007 * 110.48417 * 24.22195 * 17 15 13 34 34 H 1.08999 * 110.60421 * 261.63209 * 17 15 13 35 35 H 1.09003 * 110.75812 * 203.74388 * 18 17 15 36 36 H 1.09003 * 110.75539 * 80.37714 * 18 17 15 37 37 H 1.09000 * 110.48858 * 279.26242 * 19 18 17 38 38 H 1.09000 * 110.48743 * 156.61536 * 19 18 17 39 39 H 0.96698 * 117.00039 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3788 2.0308 -1.2626 5 6 3.8356 1.7823 -1.5573 6 1 4.4331 1.1985 -0.8727 7 6 4.4056 2.2993 -2.7014 8 7 3.6778 3.0097 -3.5353 9 14 6.2113 1.9907 -3.0670 10 1 6.3495 0.7430 -3.8603 11 1 6.7619 3.1325 -3.8404 12 1 6.9579 1.8511 -1.7909 13 6 2.1357 2.0545 1.1617 14 8 2.4631 3.2222 1.1555 15 6 1.8602 1.3562 2.4685 16 1 1.6967 0.2924 2.2966 17 6 3.0444 1.5592 3.4361 18 6 2.3774 1.7135 4.8255 19 6 1.1039 2.5344 4.5041 20 6 0.6264 1.9762 3.1475 21 1 -0.1365 1.2139 3.3051 22 6 0.0737 3.0901 2.2961 23 8 0.4389 4.2274 2.4778 24 8 -0.8241 2.8188 1.3360 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7700 1.6212 -2.0687 31 1 2.2021 3.1034 -1.1829 32 1 4.0789 3.3737 -4.3400 33 1 3.5987 2.4613 3.1767 34 1 3.7032 0.6909 3.4235 35 1 3.0280 2.2609 5.5076 36 1 2.1152 0.7394 5.2384 37 1 1.3448 3.5939 4.4172 38 1 0.3447 2.3763 5.2701 39 1 -1.1496 3.5660 0.8155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127958620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:59 Heat of formation + Delta-G solvation = -136.469680 kcal Electronic energy + Delta-G solvation = -22295.006368 eV Core-core repulsion = 19009.240346 eV Total energy + Delta-G solvation = -3285.766022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77439 -38.82503 -36.95810 -35.61341 -35.21260 -32.80044 -30.15729 -29.65541 -29.28174 -26.83743 -23.62265 -22.92538 -22.66990 -20.75749 -20.10417 -18.32972 -17.60200 -17.09656 -16.40539 -16.10779 -15.57402 -15.20952 -14.81942 -14.46979 -14.06870 -13.80955 -13.37629 -12.90720 -12.82935 -12.45145 -12.15792 -11.86765 -11.61597 -11.48896 -11.27025 -11.19509 -11.15714 -11.04307 -10.92454 -10.86631 -10.66949 -10.60580 -10.36726 -10.13077 -10.09072 -9.61672 -8.79838 -8.43229 -7.61956 -6.04007 -4.08914 2.57206 3.20295 3.29681 3.33158 3.36945 3.41684 3.94275 4.41704 4.44344 4.64822 4.86572 5.17381 5.26219 5.30657 5.32861 5.40267 5.47728 5.54993 5.58860 5.63705 5.70089 5.83970 5.88345 5.98957 6.11274 6.14334 6.24933 6.28720 6.44913 6.61001 6.86523 7.08269 7.46095 7.56932 7.92748 8.23962 8.24540 8.43936 8.90316 9.10123 9.56290 11.04006 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.006337 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.435736 B = 4417.368335 C = 4702.984992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.525 6.525 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.067 4.067 21 H 0.104 0.896 22 C 0.478 3.522 23 O -0.490 6.490 24 O -0.517 6.517 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -7.586 13.734 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.285 3.715 14 O -0.402 6.402 15 C -0.131 4.131 16 H 0.119 0.881 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.086 4.086 21 H 0.122 0.878 22 C 0.318 3.682 23 O -0.375 6.375 24 O -0.329 6.329 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.941 -6.859 13.794 17.332 hybrid contribution 0.748 0.191 -0.885 1.174 sum -7.193 -6.668 12.909 16.213 Atomic orbital electron populations 1.22269 0.96346 1.01145 1.03061 1.21473 0.93778 0.84294 1.02455 1.48239 1.62719 1.12975 1.08296 1.19246 0.95275 0.94279 0.78386 1.21446 0.95297 1.33454 1.06383 0.92495 1.24941 0.98222 0.94910 0.96037 1.69935 1.36171 1.34910 1.12321 0.86500 0.84926 0.77714 0.78310 1.20625 1.21082 1.19903 1.20165 0.78940 0.87330 0.85028 1.90767 1.46793 1.15903 1.86729 1.22092 0.95051 1.01155 0.94842 0.88056 1.22359 0.96120 1.03450 0.93000 1.22456 0.96293 0.99824 0.97006 1.22470 0.97627 1.02161 0.93095 1.21523 0.97380 0.95213 0.94533 0.87760 1.23055 0.75984 0.90242 0.78907 1.90697 1.55730 1.23481 1.67592 1.84485 1.56503 1.45052 1.46853 0.92498 0.92034 0.92231 0.89945 0.91821 0.95128 0.94027 0.92730 0.89726 0.90863 0.90791 0.91224 0.89058 0.90943 0.73459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.20 37.16 0.38 -1.91 16 2 C 0.10 1.67 5.80 -4.04 -0.02 1.65 16 3 N -0.59 -12.51 2.47 -175.07 -0.43 -12.94 16 4 C 0.25 6.54 5.17 -5.20 -0.03 6.51 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.50 10.46 5.17 -10.98 -0.06 10.40 16 14 O -0.53 -13.56 13.84 -14.06 -0.19 -13.76 16 15 C -0.11 -1.66 2.76 -90.65 -0.25 -1.91 16 16 H 0.10 1.27 5.45 -51.93 -0.28 0.99 16 17 C -0.11 -1.55 6.32 -25.07 -0.16 -1.71 16 18 C -0.12 -1.25 6.91 -24.74 -0.17 -1.43 16 19 C -0.12 -1.39 6.30 -25.07 -0.16 -1.55 16 20 C -0.07 -0.90 3.26 -90.65 -0.30 -1.19 16 21 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.48 8.00 5.12 36.00 0.18 8.18 16 23 O -0.49 -10.02 15.23 -25.39 -0.39 -10.41 16 24 O -0.52 -7.51 12.04 -39.24 -0.47 -7.98 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.06 0.81 6.39 -51.93 -0.33 0.48 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 29 H 0.06 0.85 5.97 -51.93 -0.31 0.54 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.26 7.37 -51.93 -0.38 0.88 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.46 7.36 -51.92 -0.38 1.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.34 6.82 -51.93 -0.35 0.99 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 4.83 9.10 45.56 0.41 5.24 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -35.94 317.23 -6.96 -42.90 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.97 Total: 3.24 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.00 Total: 3.30 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.30 Total: -39.11 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.05 Total: -32.15 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.94 -6.96 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.571 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds