Wall clock time and date at job start Mon Mar 30 2020 04:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46644 * 2 1 4 4 C 1.46496 * 120.00188 * 264.41255 * 3 2 1 5 5 C 1.50696 * 109.47390 * 269.99913 * 4 3 2 6 6 H 1.08003 * 120.00108 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00153 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99717 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47100 * 90.00126 * 9 7 5 11 11 H 1.48493 * 109.47070 * 210.00193 * 9 7 5 12 12 H 1.48503 * 109.47108 * 330.00323 * 9 7 5 13 13 C 1.34782 * 119.99804 * 84.41884 * 3 2 1 14 14 O 1.21281 * 119.99920 * 184.40809 * 13 3 2 15 15 C 1.50698 * 120.00240 * 4.39745 * 13 3 2 16 16 H 1.08998 * 110.05329 * 6.68825 * 15 13 3 17 17 C 1.54268 * 110.03206 * 128.09747 * 15 13 3 18 18 C 1.54888 * 104.19440 * 142.89590 * 17 15 13 19 19 C 1.54887 * 102.75092 * 322.06051 * 18 17 15 20 20 C 1.53873 * 110.03459 * 245.26824 * 15 13 3 21 21 H 1.08999 * 110.07236 * 121.40965 * 20 15 13 22 22 C 1.50696 * 110.03342 * 0.02562 * 20 15 13 23 23 O 1.20829 * 119.99416 * 267.74337 * 22 20 15 24 24 O 1.34222 * 120.00501 * 87.74169 * 22 20 15 25 25 H 1.09008 * 109.46390 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99482 * 1 2 3 27 27 H 1.08999 * 109.47391 * 60.00384 * 1 2 3 28 28 H 1.08999 * 109.47301 * 240.00517 * 2 1 3 29 29 H 1.08999 * 109.47391 * 119.99616 * 2 1 3 30 30 H 1.08994 * 109.47046 * 30.00418 * 4 3 2 31 31 H 1.09005 * 109.46929 * 150.00452 * 4 3 2 32 32 H 0.97003 * 119.99725 * 179.97438 * 8 7 5 33 33 H 1.09007 * 110.48417 * 24.22195 * 17 15 13 34 34 H 1.08999 * 110.60421 * 261.63209 * 17 15 13 35 35 H 1.09003 * 110.75812 * 203.74388 * 18 17 15 36 36 H 1.09003 * 110.75539 * 80.37714 * 18 17 15 37 37 H 1.09000 * 110.48858 * 279.26242 * 19 18 17 38 38 H 1.09000 * 110.48743 * 156.61536 * 19 18 17 39 39 H 0.96698 * 117.00039 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3788 2.0308 -1.2626 5 6 3.8356 1.7823 -1.5573 6 1 4.4331 1.1985 -0.8727 7 6 4.4056 2.2993 -2.7014 8 7 3.6778 3.0097 -3.5353 9 14 6.2113 1.9907 -3.0670 10 1 6.3495 0.7430 -3.8603 11 1 6.7619 3.1325 -3.8404 12 1 6.9579 1.8511 -1.7909 13 6 2.1357 2.0545 1.1617 14 8 2.4631 3.2222 1.1555 15 6 1.8602 1.3562 2.4685 16 1 1.6967 0.2924 2.2966 17 6 3.0444 1.5592 3.4361 18 6 2.3774 1.7135 4.8255 19 6 1.1039 2.5344 4.5041 20 6 0.6264 1.9762 3.1475 21 1 -0.1365 1.2139 3.3051 22 6 0.0737 3.0901 2.2961 23 8 0.4389 4.2274 2.4778 24 8 -0.8241 2.8188 1.3360 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7700 1.6212 -2.0687 31 1 2.2021 3.1034 -1.1829 32 1 4.0789 3.3737 -4.3400 33 1 3.5987 2.4613 3.1767 34 1 3.7032 0.6909 3.4235 35 1 3.0280 2.2609 5.5076 36 1 2.1152 0.7394 5.2384 37 1 1.3448 3.5939 4.4172 38 1 0.3447 2.3763 5.2701 39 1 -1.1496 3.5660 0.8155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127958620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:59 Heat of formation + Delta-G solvation = -161.586014 kcal Electronic energy + Delta-G solvation = -22296.095494 eV Core-core repulsion = 19009.240346 eV Total energy + Delta-G solvation = -3286.855148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.10455 -40.32203 -38.17178 -36.96522 -36.87157 -34.92724 -31.72492 -30.77352 -30.46156 -28.70519 -25.34706 -24.33346 -24.06105 -21.90801 -21.32932 -19.64324 -19.06266 -18.62918 -18.37517 -17.57355 -16.94262 -16.79815 -16.28045 -15.83770 -15.55633 -15.24909 -14.71912 -14.40958 -14.14753 -14.07024 -13.74509 -13.26905 -13.15909 -13.00491 -12.68237 -12.64091 -12.47085 -12.45938 -12.29772 -12.14820 -12.08940 -11.96259 -11.74901 -11.65398 -11.58176 -11.36049 -10.67389 -10.46918 -9.41554 -8.25525 -6.41214 1.28704 1.33145 1.36803 1.46826 1.73314 2.07236 2.30836 2.46084 3.03646 3.35397 3.58438 3.70235 4.00043 4.23661 4.32249 4.36740 4.42006 4.43654 4.49020 4.49741 4.71235 4.75735 4.95015 5.00854 5.05073 5.07683 5.12293 5.18705 5.20765 5.23779 5.48121 5.50053 5.55706 5.68073 5.85666 6.03630 6.67163 6.79934 7.00362 7.25285 7.48204 8.81483 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.006337 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.435736 B = 4417.368335 C = 4702.984992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.266 3.734 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.490 3.510 14 O -0.588 6.588 15 C -0.100 4.100 16 H 0.140 0.860 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.066 4.066 21 H 0.153 0.847 22 C 0.470 3.530 23 O -0.540 6.540 24 O -0.512 6.512 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.019 0.981 31 H -0.012 1.012 32 H 0.267 0.733 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -11.100 15.788 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.327 5.327 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.279 3.721 14 O -0.469 6.469 15 C -0.121 4.121 16 H 0.158 0.842 17 C -0.156 4.156 18 C -0.141 4.141 19 C -0.154 4.154 20 C -0.085 4.085 21 H 0.171 0.829 22 C 0.313 3.687 23 O -0.428 6.428 24 O -0.324 6.324 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.037 0.963 31 H 0.006 0.994 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -8.154 -10.439 15.853 20.658 hybrid contribution 0.751 1.323 -1.577 2.191 sum -7.403 -9.116 14.277 18.486 Atomic orbital electron populations 1.22198 0.94030 1.03399 1.02224 1.21856 0.95650 0.81299 1.03912 1.48279 1.62728 1.14973 1.06691 1.18622 0.94506 0.91603 0.80852 1.21735 0.96319 1.33614 1.06589 0.92682 1.25914 1.03228 0.94411 0.95787 1.70066 1.38340 1.35711 1.12838 0.85389 0.78696 0.78341 0.78243 1.18440 1.20772 1.19682 1.21273 0.77327 0.86803 0.86700 1.90740 1.49421 1.18962 1.87773 1.22210 0.96393 1.02341 0.91184 0.84216 1.22428 0.95985 1.02172 0.94966 1.22473 0.95010 1.01748 0.94834 1.22517 0.99514 1.00067 0.93333 1.21844 0.97575 0.95075 0.94027 0.82886 1.23936 0.75294 0.90619 0.78842 1.90680 1.57306 1.25845 1.69013 1.84463 1.55976 1.45438 1.46526 0.88578 0.91275 0.94707 0.90951 0.87880 0.96302 0.99400 0.92428 0.94495 0.88602 0.90210 0.87007 0.93009 0.87204 0.72596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.20 71.98 0.73 -3.14 16 2 C 0.09 2.84 5.80 86.38 0.50 3.34 16 3 N -0.60 -25.59 2.47 -826.17 -2.04 -27.63 16 4 C 0.27 14.82 5.17 85.63 0.44 15.26 16 5 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 6 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 9 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.49 20.84 5.17 87.66 0.45 21.29 16 14 O -0.59 -32.33 13.84 15.73 0.22 -32.12 16 15 C -0.10 -2.77 2.76 -10.82 -0.03 -2.80 16 16 H 0.14 2.74 5.45 -2.39 -0.01 2.73 16 17 C -0.12 -3.05 6.32 31.67 0.20 -2.85 16 18 C -0.10 -1.80 6.91 31.88 0.22 -1.58 16 19 C -0.12 -2.49 6.30 31.67 0.20 -2.29 16 20 C -0.07 -1.58 3.26 -10.82 -0.04 -1.62 16 21 H 0.15 2.22 8.14 -2.39 -0.02 2.21 16 22 C 0.47 15.76 5.12 71.23 0.37 16.13 16 23 O -0.54 -23.32 15.23 28.30 0.43 -22.89 16 24 O -0.51 -14.80 12.04 -51.34 -0.62 -15.42 16 25 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.07 1.57 6.39 -2.39 -0.02 1.55 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 29 H 0.10 2.28 5.97 -2.39 -0.01 2.27 16 30 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 31 H -0.01 -0.80 7.37 -2.38 -0.02 -0.82 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.04 1.31 7.36 -2.38 -0.02 1.29 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.54 6.82 -2.39 -0.02 1.52 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 10.35 9.10 -74.06 -0.67 9.67 16 Total: -1.00 -86.44 317.23 4.44 -82.00 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.38 Total: 15.15 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 3.75 Total: 10.64 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.75 Total: -85.16 kcal Atomic # 8 Polarization: -70.45 SS G_CDS: 0.03 Total: -70.42 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -86.44 4.44 -82.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127958620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.586 kcal (2) G-P(sol) polarization free energy of solvation -86.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds