Wall clock time and date at job start Mon Mar 30 2020 04:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50696 * 109.46800 * 240.00106 * 2 1 3 5 5 H 1.07995 * 119.99925 * 239.99876 * 4 2 1 6 6 C 1.37879 * 120.00137 * 59.99970 * 4 2 1 7 7 N 1.31519 * 120.00051 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47529 * 59.99575 * 8 6 4 10 10 H 1.48497 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46954 * 299.99587 * 8 6 4 12 12 N 1.46491 * 109.46946 * 120.00033 * 2 1 3 13 13 C 1.46497 * 120.00339 * 60.00193 * 12 2 1 14 14 C 1.34780 * 119.99742 * 239.99436 * 12 2 1 15 15 O 1.21280 * 120.00296 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00142 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.05527 * 331.40430 * 16 14 12 18 18 C 1.54261 * 110.03293 * 209.99058 * 16 14 12 19 19 C 1.54892 * 104.19302 * 217.10334 * 18 16 14 20 20 C 1.54885 * 102.75144 * 37.94394 * 19 18 16 21 21 C 1.53875 * 110.03269 * 92.81985 * 16 14 12 22 22 H 1.08996 * 110.07684 * 238.59375 * 21 16 14 23 23 C 1.50701 * 110.02898 * 0.02562 * 21 16 14 24 24 O 1.20824 * 119.99857 * 84.34717 * 23 21 16 25 25 O 1.34226 * 119.99804 * 264.33448 * 23 21 16 26 26 H 1.09011 * 109.46836 * 300.00270 * 1 2 3 27 27 H 1.09002 * 109.47420 * 59.99752 * 1 2 3 28 28 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99729 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46847 * 269.99686 * 13 12 2 31 31 H 1.08996 * 109.47234 * 29.99790 * 13 12 2 32 32 H 1.09002 * 109.47146 * 149.99711 * 13 12 2 33 33 H 1.09003 * 110.48983 * 98.42946 * 18 16 14 34 34 H 1.08995 * 110.60167 * 335.83362 * 18 16 14 35 35 H 1.08999 * 110.75801 * 279.62225 * 19 18 16 36 36 H 1.08999 * 110.75699 * 156.25571 * 19 18 16 37 37 H 1.09000 * 110.49157 * 203.38150 * 20 19 18 38 38 H 1.08997 * 110.59866 * 80.78766 * 20 19 18 39 39 H 0.96712 * 116.99911 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0078 10 1 1.8268 -0.4199 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7933 -0.0356 2.0832 15 8 3.0860 1.1257 1.8915 16 6 3.2961 -0.7461 3.3134 17 1 2.5970 -1.5302 3.6042 18 6 3.4725 0.2598 4.4696 19 6 4.7453 -0.2272 5.2058 20 6 5.6560 -0.6927 4.0427 21 6 4.6843 -1.3517 3.0420 22 1 4.6597 -2.4298 3.2003 23 6 5.1132 -1.0470 1.6297 24 8 5.6451 0.0072 1.3741 25 8 4.9044 -1.9470 0.6560 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7080 1.1609 -3.4844 30 1 0.7376 -2.1443 1.9993 31 1 1.5296 -2.5968 0.4708 32 1 2.4630 -2.5818 1.9863 33 1 2.6109 0.2294 5.1366 34 1 3.6184 1.2680 4.0819 35 1 4.5125 -1.0588 5.8709 36 1 5.2099 0.5907 5.7565 37 1 6.3878 -1.4183 4.3979 38 1 6.1569 0.1594 3.5832 39 1 5.1970 -1.7068 -0.2339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128116891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:56 Heat of formation + Delta-G solvation = -134.333106 kcal Electronic energy + Delta-G solvation = -22514.831680 eV Core-core repulsion = 19229.158306 eV Total energy + Delta-G solvation = -3285.673373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70820 -38.76305 -36.98895 -35.48945 -35.19423 -32.84737 -30.19070 -29.39757 -28.43259 -26.04304 -25.20849 -23.34851 -21.92417 -20.53898 -19.69914 -18.32226 -17.60010 -16.90228 -16.28316 -16.03037 -15.72073 -15.02601 -14.84515 -14.49633 -13.93230 -13.86446 -12.93867 -12.85995 -12.46369 -12.38329 -12.04032 -11.74631 -11.52442 -11.37657 -11.27144 -11.11056 -11.03949 -10.93934 -10.84785 -10.79838 -10.66571 -10.50546 -10.25553 -10.15192 -10.04664 -9.17273 -8.85157 -8.41201 -7.54508 -6.06104 -4.13953 2.61508 3.25593 3.27044 3.31820 3.32789 3.36472 3.96185 4.38971 4.42135 4.65317 4.92711 5.23280 5.26412 5.31825 5.40643 5.45064 5.49989 5.60694 5.67394 5.79702 5.87893 6.00254 6.05790 6.12390 6.23236 6.42542 6.47635 6.76907 6.85174 7.00305 7.08612 7.45170 7.55471 7.73102 8.03328 8.21856 8.34079 8.55272 8.84845 9.07915 9.52049 10.99352 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.006942 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.365231 B = 4032.306356 C = 4523.658259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.060 0.940 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.587 5.587 13 C 0.085 3.915 14 C 0.493 3.507 15 O -0.533 6.533 16 C -0.104 4.104 17 H 0.099 0.901 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.069 4.069 22 H 0.105 0.895 23 C 0.474 3.526 24 O -0.493 6.493 25 O -0.510 6.510 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -8.029 12.985 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.078 0.922 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.319 5.319 13 C -0.059 4.059 14 C 0.279 3.721 15 O -0.410 6.410 16 C -0.126 4.126 17 H 0.118 0.882 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.089 4.089 22 H 0.123 0.877 23 C 0.315 3.685 24 O -0.380 6.380 25 O -0.322 6.322 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.870 -7.098 13.014 15.604 hybrid contribution 0.316 -0.534 -1.619 1.734 sum 5.186 -7.633 11.395 14.663 Atomic orbital electron populations 1.22078 0.98274 0.99334 1.00703 1.18909 0.90784 0.94440 0.80033 0.92168 1.21277 1.31861 1.12901 0.90169 0.92054 1.24908 0.95029 0.94978 0.98937 1.69874 1.36309 1.22609 1.23796 0.86573 0.79145 0.79554 0.82164 1.20242 1.21245 1.20329 1.48209 1.48555 1.11581 1.23512 1.21594 0.98467 0.83374 1.02453 1.20265 0.79911 0.87475 0.84478 1.90680 1.57294 1.16779 1.76284 1.21991 0.95267 0.99397 0.95977 0.88246 1.22388 0.97725 1.00181 0.94793 1.22448 0.95602 1.00749 0.96779 1.22460 0.96869 1.01251 0.94719 1.21519 0.95914 1.02580 0.88928 0.87682 1.23071 0.75741 0.81680 0.88050 1.90726 1.39291 1.24662 1.83286 1.84442 1.77736 1.48129 1.21927 0.97138 0.88912 0.95176 0.92670 0.94136 0.90023 0.92735 0.91116 0.89136 0.91266 0.90828 0.90877 0.89306 0.72883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.64 2.64 -69.09 -0.18 6.46 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.52 -13.91 7.99 -34.44 -0.28 -14.18 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.59 -12.49 2.75 -175.27 -0.48 -12.98 16 13 C 0.09 1.43 8.85 59.85 0.53 1.96 16 14 C 0.49 10.34 4.77 -10.98 -0.05 10.28 16 15 O -0.53 -13.61 14.37 -2.65 -0.04 -13.65 16 16 C -0.10 -1.58 2.40 -90.66 -0.22 -1.79 16 17 H 0.10 1.23 6.59 -51.93 -0.34 0.89 16 18 C -0.11 -1.53 6.31 -25.07 -0.16 -1.68 16 19 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 20 C -0.12 -1.39 6.32 -25.07 -0.16 -1.55 16 21 C -0.07 -0.97 3.12 -90.65 -0.28 -1.25 16 22 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 23 C 0.47 8.48 5.46 36.01 0.20 8.68 16 24 O -0.49 -10.77 15.80 -22.62 -0.36 -11.12 16 25 O -0.51 -8.45 13.42 -39.25 -0.53 -8.98 16 26 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 32 H 0.05 0.76 6.27 -51.93 -0.33 0.43 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.51 6.88 -51.93 -0.36 1.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.31 6.92 -51.93 -0.36 0.95 16 39 H 0.41 6.23 9.10 45.56 0.41 6.64 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -33.70 313.61 -6.49 -40.18 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.88 Total: 6.67 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -0.53 Total: 3.97 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.14 Total: -37.65 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.92 Total: -33.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.70 -6.49 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128116891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.149 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds