Wall clock time and date at job start Mon Mar 30 2020 04:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50696 * 109.46800 * 240.00106 * 2 1 3 5 5 H 1.07995 * 119.99925 * 239.99876 * 4 2 1 6 6 C 1.37879 * 120.00137 * 59.99970 * 4 2 1 7 7 N 1.31519 * 120.00051 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47529 * 59.99575 * 8 6 4 10 10 H 1.48497 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46954 * 299.99587 * 8 6 4 12 12 N 1.46491 * 109.46946 * 120.00033 * 2 1 3 13 13 C 1.46497 * 120.00339 * 60.00193 * 12 2 1 14 14 C 1.34780 * 119.99742 * 239.99436 * 12 2 1 15 15 O 1.21280 * 120.00296 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00142 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.05527 * 331.40430 * 16 14 12 18 18 C 1.54261 * 110.03293 * 209.99058 * 16 14 12 19 19 C 1.54892 * 104.19302 * 217.10334 * 18 16 14 20 20 C 1.54885 * 102.75144 * 37.94394 * 19 18 16 21 21 C 1.53875 * 110.03269 * 92.81985 * 16 14 12 22 22 H 1.08996 * 110.07684 * 238.59375 * 21 16 14 23 23 C 1.50701 * 110.02898 * 0.02562 * 21 16 14 24 24 O 1.20824 * 119.99857 * 84.34717 * 23 21 16 25 25 O 1.34226 * 119.99804 * 264.33448 * 23 21 16 26 26 H 1.09011 * 109.46836 * 300.00270 * 1 2 3 27 27 H 1.09002 * 109.47420 * 59.99752 * 1 2 3 28 28 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99729 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.46847 * 269.99686 * 13 12 2 31 31 H 1.08996 * 109.47234 * 29.99790 * 13 12 2 32 32 H 1.09002 * 109.47146 * 149.99711 * 13 12 2 33 33 H 1.09003 * 110.48983 * 98.42946 * 18 16 14 34 34 H 1.08995 * 110.60167 * 335.83362 * 18 16 14 35 35 H 1.08999 * 110.75801 * 279.62225 * 19 18 16 36 36 H 1.08999 * 110.75699 * 156.25571 * 19 18 16 37 37 H 1.09000 * 110.49157 * 203.38150 * 20 19 18 38 38 H 1.08997 * 110.59866 * 80.78766 * 20 19 18 39 39 H 0.96712 * 116.99911 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0078 10 1 1.8268 -0.4199 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7933 -0.0356 2.0832 15 8 3.0860 1.1257 1.8915 16 6 3.2961 -0.7461 3.3134 17 1 2.5970 -1.5302 3.6042 18 6 3.4725 0.2598 4.4696 19 6 4.7453 -0.2272 5.2058 20 6 5.6560 -0.6927 4.0427 21 6 4.6843 -1.3517 3.0420 22 1 4.6597 -2.4298 3.2003 23 6 5.1132 -1.0470 1.6297 24 8 5.6451 0.0072 1.3741 25 8 4.9044 -1.9470 0.6560 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7080 1.1609 -3.4844 30 1 0.7376 -2.1443 1.9993 31 1 1.5296 -2.5968 0.4708 32 1 2.4630 -2.5818 1.9863 33 1 2.6109 0.2294 5.1366 34 1 3.6184 1.2680 4.0819 35 1 4.5125 -1.0588 5.8709 36 1 5.2099 0.5907 5.7565 37 1 6.3878 -1.4183 4.3979 38 1 6.1569 0.1594 3.5832 39 1 5.1970 -1.7068 -0.2339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128116891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:55 Heat of formation + Delta-G solvation = -158.032306 kcal Electronic energy + Delta-G solvation = -22515.859354 eV Core-core repulsion = 19229.158306 eV Total energy + Delta-G solvation = -3286.701048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08347 -40.32524 -38.25936 -36.97802 -36.92084 -34.78393 -31.84887 -30.53653 -29.78361 -27.52571 -27.29735 -24.68025 -23.46517 -21.65186 -21.17721 -19.73275 -19.06755 -18.51985 -18.10442 -17.50921 -17.16112 -16.74212 -16.11783 -15.90143 -15.54117 -15.24957 -14.58763 -14.21503 -14.12357 -13.90106 -13.57573 -13.21691 -13.04024 -12.86571 -12.74993 -12.65330 -12.52706 -12.40642 -12.26836 -12.14415 -12.13175 -11.97479 -11.87563 -11.58008 -11.37181 -11.19343 -10.61261 -10.43178 -9.28835 -8.13755 -6.29893 1.23687 1.40513 1.42896 1.49973 1.73323 2.06390 2.34255 2.52456 3.14488 3.36784 3.56823 3.76704 4.13313 4.32000 4.37142 4.41633 4.45260 4.49495 4.56161 4.74499 4.76126 4.78666 4.88119 5.01867 5.05126 5.10481 5.14563 5.21267 5.22539 5.47934 5.50540 5.61381 5.67686 5.68808 6.05416 6.17400 6.78884 6.84753 6.97900 7.33595 7.50779 8.90832 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.006942 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.365231 B = 4032.306356 C = 4523.658259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H -0.004 1.004 4 C -0.529 4.529 5 H 0.070 0.930 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.965 3.035 9 H -0.259 1.259 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.593 5.593 13 C 0.079 3.921 14 C 0.481 3.519 15 O -0.594 6.594 16 C -0.097 4.097 17 H 0.142 0.858 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.068 4.068 22 H 0.154 0.846 23 C 0.467 3.533 24 O -0.546 6.546 25 O -0.506 6.506 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -11.739 15.099 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.014 0.986 4 C -0.568 4.568 5 H 0.088 0.912 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.790 3.210 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.201 1.201 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.270 3.730 15 O -0.476 6.476 16 C -0.118 4.118 17 H 0.159 0.841 18 C -0.156 4.156 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.087 4.087 22 H 0.172 0.828 23 C 0.310 3.690 24 O -0.436 6.436 25 O -0.317 6.317 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.082 -10.876 15.155 19.333 hybrid contribution 0.242 0.673 -2.283 2.392 sum 5.324 -10.203 12.872 17.266 Atomic orbital electron populations 1.21858 0.97260 1.00146 0.99654 1.18464 0.91483 0.91760 0.82221 0.98611 1.21559 1.31631 1.12937 0.90665 0.91173 1.25797 0.95221 0.95654 1.02214 1.70044 1.37650 1.24190 1.24292 0.85508 0.78467 0.79037 0.77990 1.18334 1.21526 1.20064 1.48203 1.48509 1.13360 1.22210 1.21878 1.01127 0.80432 1.02846 1.21386 0.78768 0.87046 0.85821 1.90657 1.59196 1.19844 1.77854 1.22146 0.96510 1.00232 0.92919 0.84055 1.22432 1.00696 0.97512 0.94919 1.22466 0.93079 1.02295 0.96248 1.22518 0.97458 1.00749 0.94653 1.21865 0.95236 1.05447 0.86173 0.82845 1.24090 0.74409 0.80841 0.89668 1.90714 1.41782 1.26848 1.84253 1.84438 1.77356 1.47757 1.22187 0.96465 0.91687 0.93160 0.92876 0.91488 0.91232 0.89056 0.88623 0.93723 0.87125 0.90170 0.87209 0.93191 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.26 13.97 2.64 44.25 0.12 14.09 16 3 H 0.00 -0.27 6.90 -2.39 -0.02 -0.28 16 4 C -0.53 -28.56 7.99 25.60 0.20 -28.36 16 5 H 0.07 3.56 7.33 -2.91 -0.02 3.54 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -54.52 11.32 21.45 0.24 -54.28 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.59 -24.96 2.75 -826.82 -2.28 -27.23 16 13 C 0.08 2.40 8.85 127.77 1.13 3.53 16 14 C 0.48 20.26 4.77 87.66 0.42 20.68 16 15 O -0.59 -32.26 14.37 4.81 0.07 -32.19 16 16 C -0.10 -2.64 2.40 -10.82 -0.03 -2.66 16 17 H 0.14 2.67 6.59 -2.39 -0.02 2.66 16 18 C -0.12 -2.93 6.31 31.67 0.20 -2.73 16 19 C -0.10 -1.74 6.91 31.88 0.22 -1.52 16 20 C -0.12 -2.46 6.32 31.67 0.20 -2.26 16 21 C -0.07 -1.65 3.12 -10.81 -0.03 -1.69 16 22 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 23 C 0.47 16.40 5.46 71.24 0.39 16.79 16 24 O -0.55 -24.86 15.80 25.67 0.41 -24.46 16 25 O -0.51 -16.14 13.42 -51.38 -0.69 -16.83 16 26 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 3.58 6.07 -2.39 -0.01 3.56 16 28 H 0.05 2.21 7.67 -2.39 -0.02 2.20 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 32 H 0.09 2.08 6.27 -2.39 -0.01 2.06 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.53 6.88 -2.39 -0.02 1.52 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.47 6.92 -2.39 -0.02 1.45 16 39 H 0.41 12.56 9.10 -74.05 -0.67 11.88 16 Total: -1.00 -81.31 313.61 4.08 -77.23 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.39 Total: 21.54 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 3.91 Total: 11.08 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.03 Total: -81.51 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -0.21 Total: -73.47 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -81.31 4.08 -77.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128116891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.802 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds