Wall clock time and date at job start Mon Mar 30 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45430 * 2 1 4 4 C 1.53039 * 109.46002 * 240.01949 * 2 1 3 5 5 C 1.53127 * 109.27435 * 180.80837 * 4 2 1 6 6 C 1.53121 * 109.16017 * 57.65848 * 5 4 2 7 7 C 1.53033 * 109.27795 * 302.34076 * 6 5 4 8 8 H 1.08996 * 109.45889 * 299.17468 * 7 6 5 9 9 C 1.52994 * 109.46229 * 179.19351 * 7 6 5 10 10 N 1.46847 * 109.52317 * 59.18305 * 7 6 5 11 11 N 1.36595 * 111.00520 * 174.15812 * 10 7 6 12 12 C 1.34770 * 120.00397 * 236.02539 * 11 10 7 13 13 O 1.21441 * 120.00224 * 355.00180 * 12 11 10 14 14 C 1.48837 * 120.00282 * 175.00855 * 12 11 10 15 15 O 1.21503 * 119.99430 * 359.97438 * 14 12 11 16 16 N 1.34778 * 120.00088 * 179.97438 * 14 12 11 17 17 C 1.36115 * 119.99973 * 179.97438 * 16 14 12 18 18 H 1.08006 * 119.99847 * 0.02562 * 17 16 14 19 19 C 1.39587 * 120.00154 * 179.97438 * 17 16 14 20 20 N 1.31015 * 119.99784 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47422 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47226 * 300.00778 * 21 19 17 24 24 H 1.48507 * 109.46590 * 60.00081 * 21 19 17 25 25 H 1.08996 * 109.47059 * 305.13023 * 1 2 3 26 26 H 1.09002 * 109.46981 * 65.12744 * 1 2 3 27 27 H 1.08995 * 109.47244 * 185.12845 * 1 2 3 28 28 H 1.09001 * 109.49839 * 60.87322 * 4 2 1 29 29 H 1.08997 * 109.53725 * 300.77103 * 4 2 1 30 30 H 1.08997 * 109.52463 * 297.74948 * 5 4 2 31 31 H 1.09005 * 109.51513 * 177.56473 * 5 4 2 32 32 H 1.09000 * 109.50005 * 182.40132 * 6 5 4 33 33 H 1.08997 * 109.50281 * 62.28957 * 6 5 4 34 34 H 1.09003 * 109.47550 * 299.95385 * 9 7 6 35 35 H 1.09005 * 109.47094 * 59.95368 * 9 7 6 36 36 H 1.08999 * 109.47104 * 179.97438 * 9 7 6 37 37 H 0.97003 * 119.99593 * 56.02056 * 11 10 7 38 38 H 0.97000 * 119.99768 * 0.02562 * 16 14 12 39 39 H 0.97001 * 119.99769 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7363 -1.2354 6 6 4.0547 -1.4190 0.0469 7 6 3.4865 -0.6778 1.2592 8 1 3.8403 0.3531 1.2531 9 6 3.9509 -1.3686 2.5428 10 7 2.0193 -0.6917 1.1995 11 7 1.4780 -0.1513 2.3312 12 6 0.6037 -0.8652 3.0675 13 8 0.2273 -1.9522 2.6780 14 6 0.0992 -0.3216 4.3579 15 8 0.4760 0.7657 4.7477 16 7 -0.7756 -1.0354 5.0939 17 6 -1.2366 -0.5385 6.2743 18 1 -0.9016 0.4281 6.6208 19 6 -2.1430 -1.2775 7.0363 20 7 -2.5496 -2.4498 6.6156 21 14 -2.7761 -0.5952 8.6559 22 1 -3.7192 -1.5658 9.2671 23 1 -1.6342 -0.3678 9.5775 24 1 -3.4779 0.6904 8.4107 25 1 -0.3633 0.5913 0.8404 26 1 -0.3633 0.4322 -0.9324 27 1 -0.3633 -1.0235 0.0919 28 1 1.6895 -0.1983 -2.1399 29 1 1.6658 -1.7448 -1.2582 30 1 3.9458 0.2868 -1.2671 31 1 3.9379 -1.2866 -2.1019 32 1 5.1438 -1.3950 0.0834 33 1 3.7124 -2.4538 0.0597 34 1 3.5968 -2.3995 2.5493 35 1 5.0400 -1.3583 2.5874 36 1 3.5466 -0.8405 3.4064 37 1 1.7231 0.7465 2.6050 38 1 -1.0761 -1.9037 4.7827 39 1 -2.2211 -2.8039 5.7744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147705776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:35 Heat of formation + Delta-G solvation = -49.563042 kcal Electronic energy + Delta-G solvation = -21534.565725 eV Core-core repulsion = 18284.861009 eV Total energy + Delta-G solvation = -3249.704716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37592 -38.77595 -37.04315 -34.96248 -34.33320 -33.62193 -31.26797 -30.54102 -28.22124 -26.34339 -25.53437 -23.43914 -21.87478 -21.25936 -20.24183 -19.61737 -18.24050 -17.68452 -16.76239 -16.12929 -15.41143 -14.71282 -14.68520 -14.34294 -14.06782 -13.99094 -13.82854 -13.61179 -13.15753 -12.53511 -12.47348 -12.45538 -11.86852 -11.81467 -11.60919 -11.40513 -11.08750 -10.93278 -10.90650 -10.70266 -10.59954 -10.35894 -10.28481 -10.05070 -9.75401 -8.92336 -8.65506 -8.29494 -8.27454 -7.02463 -4.06514 2.41770 2.79333 3.26917 3.30133 3.47502 4.09921 4.25867 4.27063 4.62337 4.64304 4.76728 4.93899 4.98217 5.13485 5.16006 5.23805 5.29069 5.48849 5.50230 5.62281 5.73453 5.75130 5.77498 5.77976 5.87628 5.98216 6.04927 6.07081 6.23522 6.29580 6.39944 6.93372 7.46343 7.57229 7.69385 7.85715 8.30570 8.52014 8.91780 9.22696 9.65941 10.39425 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.004366 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.447976 B = 6411.393332 C = 6622.302089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.108 4.108 7 C 0.066 3.934 8 H 0.044 0.956 9 C -0.145 4.145 10 N -0.286 5.286 11 N -0.563 5.563 12 C 0.532 3.468 13 O -0.523 6.523 14 C 0.399 3.601 15 O -0.593 6.593 16 N -0.510 5.510 17 C -0.384 4.384 18 H 0.109 0.891 19 C 0.000 4.000 20 N -0.866 5.866 21 Si 1.096 2.904 22 H -0.276 1.276 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.255 2.942 -13.159 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 H 0.060 0.940 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.146 4.146 7 C -0.042 4.042 8 H 0.062 0.938 9 C -0.203 4.203 10 N -0.105 5.105 11 N -0.309 5.309 12 C 0.317 3.683 13 O -0.396 6.396 14 C 0.183 3.817 15 O -0.481 6.481 16 N -0.146 5.146 17 C -0.515 4.515 18 H 0.127 0.873 19 C -0.207 4.207 20 N -0.503 5.503 21 Si 0.920 3.080 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.224 0.776 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.053 2.026 -11.887 15.079 hybrid contribution 1.388 1.162 -1.531 2.370 sum 10.441 3.188 -13.418 17.298 Atomic orbital electron populations 1.21794 0.93513 1.03487 1.01368 1.22137 0.96588 0.95599 0.89995 0.93956 1.21618 0.95271 1.01902 0.95891 1.21636 0.95895 1.00675 0.97913 1.21616 0.99767 1.00530 0.92732 1.22104 0.86638 0.98569 0.96888 0.93767 1.21807 1.00258 1.01861 0.96347 1.62897 1.05819 1.48609 0.93190 1.44888 1.46231 1.17901 1.21902 1.20480 0.78327 0.84672 0.84839 1.90660 1.56521 1.20996 1.71400 1.18802 0.87979 0.88163 0.86802 1.90587 1.62635 1.21966 1.72906 1.41559 1.35752 1.18526 1.18737 1.20742 1.26383 1.07069 0.97259 0.87344 1.26921 0.94236 0.94489 1.05061 1.70694 1.40853 1.16662 1.22061 0.83092 0.76722 0.75566 0.72634 1.20055 1.20533 1.20532 0.92606 0.92278 0.91072 0.91172 0.90548 0.92247 0.91450 0.91089 0.90559 0.91566 0.92147 0.92075 0.77083 0.77647 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.74 37.16 0.32 -1.71 16 2 C 0.06 0.84 2.63 -67.72 -0.18 0.67 16 3 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -1.13 5.37 -26.65 -0.14 -1.27 16 5 C -0.12 -1.11 6.00 -26.60 -0.16 -1.27 16 6 C -0.11 -1.10 5.37 -26.65 -0.14 -1.24 16 7 C 0.07 0.84 2.63 -67.73 -0.18 0.66 16 8 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 9 C -0.15 -1.96 9.11 37.15 0.34 -1.62 16 10 N -0.29 -4.38 4.09 -99.77 -0.41 -4.78 16 11 N -0.56 -9.99 2.71 30.76 0.08 -9.91 16 12 C 0.53 11.58 7.47 -11.88 -0.09 11.49 16 13 O -0.52 -12.26 16.80 5.42 0.09 -12.17 16 14 C 0.40 10.01 7.82 -11.87 -0.09 9.92 16 15 O -0.59 -15.90 16.04 5.36 0.09 -15.81 16 16 N -0.51 -13.49 5.24 -11.58 -0.06 -13.55 16 17 C -0.38 -10.62 9.67 -15.15 -0.15 -10.77 16 18 H 0.11 3.09 7.15 -52.48 -0.38 2.71 16 19 C 0.00 0.01 5.51 -17.40 -0.10 -0.09 16 20 N -0.87 -23.88 13.66 55.53 0.76 -23.12 16 21 Si 1.10 23.07 29.93 -169.99 -5.09 17.98 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.05 0.89 7.51 -51.93 -0.39 0.50 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.95 7.46 -51.93 -0.39 0.56 16 37 H 0.39 6.66 8.30 -185.16 -1.54 5.12 16 38 H 0.39 10.05 6.18 -40.82 -0.25 9.80 16 39 H 0.27 7.41 6.78 -40.82 -0.28 7.13 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -31.00 321.20 -7.35 -38.35 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.09 Total: 13.41 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.56 Total: 4.77 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.37 Total: -51.36 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: 0.18 Total: -27.98 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.09 Total: 17.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.00 -7.35 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147705776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.212 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds