Wall clock time and date at job start Mon Mar 30 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45430 * 2 1 4 4 C 1.53039 * 109.46002 * 240.01949 * 2 1 3 5 5 C 1.53127 * 109.27435 * 180.80837 * 4 2 1 6 6 C 1.53121 * 109.16017 * 57.65848 * 5 4 2 7 7 C 1.53033 * 109.27795 * 302.34076 * 6 5 4 8 8 H 1.08996 * 109.45889 * 299.17468 * 7 6 5 9 9 C 1.52994 * 109.46229 * 179.19351 * 7 6 5 10 10 N 1.46847 * 109.52317 * 59.18305 * 7 6 5 11 11 N 1.36595 * 111.00520 * 174.15812 * 10 7 6 12 12 C 1.34770 * 120.00397 * 236.02539 * 11 10 7 13 13 O 1.21441 * 120.00224 * 355.00180 * 12 11 10 14 14 C 1.48837 * 120.00282 * 175.00855 * 12 11 10 15 15 O 1.21503 * 119.99430 * 359.97438 * 14 12 11 16 16 N 1.34778 * 120.00088 * 179.97438 * 14 12 11 17 17 C 1.36115 * 119.99973 * 179.97438 * 16 14 12 18 18 H 1.08006 * 119.99847 * 0.02562 * 17 16 14 19 19 C 1.39587 * 120.00154 * 179.97438 * 17 16 14 20 20 N 1.31015 * 119.99784 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47422 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.47226 * 300.00778 * 21 19 17 24 24 H 1.48507 * 109.46590 * 60.00081 * 21 19 17 25 25 H 1.08996 * 109.47059 * 305.13023 * 1 2 3 26 26 H 1.09002 * 109.46981 * 65.12744 * 1 2 3 27 27 H 1.08995 * 109.47244 * 185.12845 * 1 2 3 28 28 H 1.09001 * 109.49839 * 60.87322 * 4 2 1 29 29 H 1.08997 * 109.53725 * 300.77103 * 4 2 1 30 30 H 1.08997 * 109.52463 * 297.74948 * 5 4 2 31 31 H 1.09005 * 109.51513 * 177.56473 * 5 4 2 32 32 H 1.09000 * 109.50005 * 182.40132 * 6 5 4 33 33 H 1.08997 * 109.50281 * 62.28957 * 6 5 4 34 34 H 1.09003 * 109.47550 * 299.95385 * 9 7 6 35 35 H 1.09005 * 109.47094 * 59.95368 * 9 7 6 36 36 H 1.08999 * 109.47104 * 179.97438 * 9 7 6 37 37 H 0.97003 * 119.99593 * 56.02056 * 11 10 7 38 38 H 0.97000 * 119.99768 * 0.02562 * 16 14 12 39 39 H 0.97001 * 119.99769 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5710 -0.7363 -1.2354 6 6 4.0547 -1.4190 0.0469 7 6 3.4865 -0.6778 1.2592 8 1 3.8403 0.3531 1.2531 9 6 3.9509 -1.3686 2.5428 10 7 2.0193 -0.6917 1.1995 11 7 1.4780 -0.1513 2.3312 12 6 0.6037 -0.8652 3.0675 13 8 0.2273 -1.9522 2.6780 14 6 0.0992 -0.3216 4.3579 15 8 0.4760 0.7657 4.7477 16 7 -0.7756 -1.0354 5.0939 17 6 -1.2366 -0.5385 6.2743 18 1 -0.9016 0.4281 6.6208 19 6 -2.1430 -1.2775 7.0363 20 7 -2.5496 -2.4498 6.6156 21 14 -2.7761 -0.5952 8.6559 22 1 -3.7192 -1.5658 9.2671 23 1 -1.6342 -0.3678 9.5775 24 1 -3.4779 0.6904 8.4107 25 1 -0.3633 0.5913 0.8404 26 1 -0.3633 0.4322 -0.9324 27 1 -0.3633 -1.0235 0.0919 28 1 1.6895 -0.1983 -2.1399 29 1 1.6658 -1.7448 -1.2582 30 1 3.9458 0.2868 -1.2671 31 1 3.9379 -1.2866 -2.1019 32 1 5.1438 -1.3950 0.0834 33 1 3.7124 -2.4538 0.0597 34 1 3.5968 -2.3995 2.5493 35 1 5.0400 -1.3583 2.5874 36 1 3.5466 -0.8405 3.4064 37 1 1.7231 0.7465 2.6050 38 1 -1.0761 -1.9037 4.7827 39 1 -2.2211 -2.8039 5.7744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147705776.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:34 Heat of formation + Delta-G solvation = -70.948850 kcal Electronic energy + Delta-G solvation = -21535.493083 eV Core-core repulsion = 18284.861009 eV Total energy + Delta-G solvation = -3250.632075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82759 -40.43698 -38.83786 -36.81922 -35.83156 -34.64539 -33.32231 -31.76893 -29.49956 -27.50817 -27.27167 -25.09452 -23.14689 -22.29937 -21.60360 -21.06987 -20.28120 -19.36840 -18.22140 -17.36497 -17.24968 -16.69634 -16.24611 -15.50611 -15.35261 -15.31212 -15.19728 -14.87141 -14.52896 -14.35168 -13.52856 -13.51041 -13.45894 -13.04674 -12.88367 -12.74084 -12.67802 -12.43451 -12.02800 -11.92907 -11.88573 -11.67854 -11.67473 -11.60477 -11.41144 -10.38833 -10.35442 -10.33495 -9.78220 -9.15861 -6.24225 0.53212 1.28753 1.56512 1.63477 1.85520 2.33936 2.38160 2.85786 3.08887 3.22607 3.72539 3.72866 3.84679 3.94836 3.98579 4.17864 4.20814 4.37456 4.55260 4.59537 4.60028 4.76675 4.78967 4.93769 4.95285 5.06693 5.14787 5.19586 5.20240 5.23859 5.36171 5.45407 5.69804 5.86856 5.95528 6.01295 6.29351 6.47198 7.11989 7.32284 7.58585 8.27865 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.004366 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.447976 B = 6411.393332 C = 6622.302089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 H 0.057 0.943 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.104 4.104 7 C 0.063 3.937 8 H 0.059 0.941 9 C -0.143 4.143 10 N -0.308 5.308 11 N -0.543 5.543 12 C 0.542 3.458 13 O -0.543 6.543 14 C 0.400 3.600 15 O -0.611 6.611 16 N -0.523 5.523 17 C -0.416 4.416 18 H 0.095 0.905 19 C -0.030 4.030 20 N -0.884 5.884 21 Si 1.142 2.858 22 H -0.271 1.271 23 H -0.265 1.265 24 H -0.265 1.265 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.393 0.607 38 H 0.389 0.611 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.722 3.850 -14.634 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.044 4.044 8 H 0.077 0.923 9 C -0.201 4.201 10 N -0.127 5.127 11 N -0.287 5.287 12 C 0.325 3.675 13 O -0.419 6.419 14 C 0.184 3.816 15 O -0.499 6.499 16 N -0.159 5.159 17 C -0.545 4.545 18 H 0.113 0.887 19 C -0.233 4.233 20 N -0.520 5.520 21 Si 0.959 3.041 22 H -0.195 1.195 23 H -0.190 1.190 24 H -0.189 1.189 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.233 0.767 38 H 0.223 0.777 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.557 2.956 -13.401 17.314 hybrid contribution 1.039 0.912 -1.208 1.836 sum 11.596 3.868 -14.608 19.048 Atomic orbital electron populations 1.21786 0.94755 1.01516 1.01857 1.22286 0.95632 0.96653 0.89936 0.92486 1.21639 0.96585 1.00960 0.95091 1.21639 0.94440 1.01671 0.97839 1.21641 1.01128 0.99418 0.92041 1.22282 0.84722 0.99720 0.97703 0.92266 1.21808 1.02115 1.00265 0.95900 1.63014 1.07670 1.49433 0.92599 1.44606 1.44523 1.17299 1.22255 1.19760 0.79115 0.84530 0.84110 1.90653 1.57675 1.21829 1.71694 1.19460 0.86888 0.87653 0.87639 1.90554 1.62942 1.22713 1.73740 1.41641 1.36475 1.18751 1.19003 1.20837 1.28023 1.07226 0.98434 0.88710 1.28435 0.93420 0.93828 1.07574 1.70793 1.41663 1.17543 1.22007 0.82581 0.76887 0.75616 0.69040 1.19508 1.18960 1.18936 0.95144 0.89310 0.93655 0.88752 0.91978 0.90866 0.89339 0.88532 0.91902 0.93527 0.89147 0.94818 0.76658 0.77655 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.74 71.98 0.63 -3.27 16 2 C 0.06 1.50 2.63 44.94 0.12 1.62 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.10 -1.86 5.37 30.65 0.16 -1.69 16 5 C -0.12 -1.65 6.00 30.68 0.18 -1.46 16 6 C -0.10 -1.79 5.37 30.65 0.16 -1.62 16 7 C 0.06 1.47 2.63 44.93 0.12 1.59 16 8 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 9 C -0.14 -3.73 9.11 71.98 0.66 -3.08 16 10 N -0.31 -9.13 4.09 -469.57 -1.92 -11.05 16 11 N -0.54 -19.36 2.71 -174.92 -0.47 -19.83 16 12 C 0.54 24.21 7.47 87.08 0.65 24.87 16 13 O -0.54 -26.28 16.80 -3.53 -0.06 -26.34 16 14 C 0.40 20.69 7.82 87.08 0.68 21.37 16 15 O -0.61 -33.50 16.04 -3.72 -0.06 -33.56 16 16 N -0.52 -28.69 5.24 -308.86 -1.62 -30.31 16 17 C -0.42 -23.63 9.67 84.35 0.82 -22.81 16 18 H 0.09 5.55 7.15 -2.91 -0.02 5.53 16 19 C -0.03 -1.61 5.51 85.14 0.47 -1.15 16 20 N -0.88 -49.60 13.66 21.77 0.30 -49.31 16 21 Si 1.14 46.11 29.93 68.60 2.05 48.17 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 25 H 0.03 0.96 7.51 -2.39 -0.02 0.94 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.03 1.04 7.46 -2.39 -0.02 1.02 16 37 H 0.39 13.38 8.30 -215.50 -1.79 11.60 16 38 H 0.39 21.04 6.18 -92.71 -0.57 20.47 16 39 H 0.26 14.79 6.78 -92.71 -0.63 14.17 16 Total: -1.00 -68.79 321.20 1.71 -67.08 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -1.16 Total: 40.80 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 4.65 Total: 14.36 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.72 Total: -110.50 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -0.12 Total: -59.90 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.05 Total: 48.17 kcal Total: -68.79 1.71 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147705776.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.871 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds