Wall clock time and date at job start Mon Mar 30 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.45311 * 2 1 4 4 C 1.53040 * 109.45780 * 119.97016 * 2 1 3 5 5 C 1.53128 * 109.27536 * 179.19790 * 4 2 1 6 6 C 1.53120 * 109.15849 * 302.34538 * 5 4 2 7 7 C 1.53036 * 109.27803 * 57.65428 * 6 5 4 8 8 H 1.08997 * 109.45460 * 180.80500 * 7 6 5 9 9 C 1.53005 * 109.46205 * 60.83792 * 7 6 5 10 10 N 1.46836 * 109.46402 * 240.02551 * 2 1 3 11 11 N 1.36603 * 111.00266 * 54.14626 * 10 2 1 12 12 C 1.34779 * 119.99840 * 244.21122 * 11 10 2 13 13 O 1.21444 * 120.00152 * 359.97438 * 12 11 10 14 14 C 1.48830 * 119.99729 * 179.97438 * 12 11 10 15 15 O 1.21501 * 120.00029 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00016 * 179.97438 * 14 12 11 17 17 C 1.36117 * 120.00035 * 179.97438 * 16 14 12 18 18 H 1.07998 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.39587 * 119.99777 * 180.02562 * 17 16 14 20 20 N 1.31014 * 120.00294 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99592 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99773 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99766 * 21 19 17 25 25 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47036 * 299.97796 * 1 2 3 27 27 H 1.09004 * 109.46659 * 59.97570 * 1 2 3 28 28 H 1.08996 * 109.50111 * 59.25735 * 4 2 1 29 29 H 1.09001 * 109.53904 * 299.15401 * 4 2 1 30 30 H 1.09001 * 109.51837 * 182.44287 * 5 4 2 31 31 H 1.09001 * 109.52070 * 62.24900 * 5 4 2 32 32 H 1.09004 * 109.50255 * 297.71623 * 6 5 4 33 33 H 1.08998 * 109.50109 * 177.59474 * 6 5 4 34 34 H 1.09006 * 109.46877 * 299.94585 * 9 7 6 35 35 H 1.08999 * 109.47167 * 59.94150 * 9 7 6 36 36 H 1.09003 * 109.47165 * 179.97438 * 9 7 6 37 37 H 0.96996 * 119.99767 * 64.21178 * 11 10 2 38 38 H 0.97004 * 119.99830 * 0.02562 * 16 14 12 39 39 H 0.97006 * 119.99572 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5710 -0.7360 1.2358 6 6 4.0548 -1.4188 -0.0465 7 6 3.4865 -0.6777 -1.2589 8 1 3.8176 -1.1700 -2.1733 9 6 3.9833 0.7694 -1.2507 10 7 2.0193 -0.6917 -1.1993 11 7 1.4782 -0.1513 -2.3312 12 6 0.6666 -0.8931 -3.1106 13 8 0.4167 -2.0421 -2.8069 14 6 0.0766 -0.3042 -4.3435 15 8 0.3270 0.8452 -4.6476 16 7 -0.7346 -1.0461 -5.1232 17 6 -1.2746 -0.5073 -6.2505 18 1 -1.0528 0.5146 -6.5204 19 6 -2.1152 -1.2756 -7.0578 20 7 -2.3840 -2.5154 -6.7307 21 14 -2.8557 -0.5363 -8.6052 22 1 -4.1591 0.0953 -8.2773 23 1 -3.0640 -1.6060 -9.6141 24 1 -1.9329 0.4893 -9.1545 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6658 -1.7446 1.2577 29 1 1.6894 -0.1987 2.1404 30 1 3.9378 -1.2862 2.1022 31 1 3.9456 0.2871 1.2673 32 1 3.7125 -2.4536 -0.0592 33 1 5.1439 -1.3946 -0.0829 34 1 3.6520 1.2621 -0.3365 35 1 5.0723 0.7800 -1.2949 36 1 3.5789 1.2973 -2.1144 37 1 1.6781 0.7663 -2.5739 38 1 -0.9342 -1.9639 -4.8806 39 1 -1.9991 -2.8994 -5.9273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147706001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:37 Heat of formation + Delta-G solvation = -46.087504 kcal Electronic energy + Delta-G solvation = -21518.834164 eV Core-core repulsion = 18269.280158 eV Total energy + Delta-G solvation = -3249.554006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54772 -38.90255 -37.09252 -34.98622 -34.34686 -33.30188 -31.26919 -30.52771 -28.06266 -26.67963 -25.52371 -23.58936 -22.37959 -21.63245 -19.71167 -19.24568 -18.23769 -17.67630 -16.77364 -15.89144 -15.45315 -15.13220 -14.71751 -14.53127 -14.02923 -13.86086 -13.79182 -13.57259 -13.16935 -12.77684 -12.61276 -12.46829 -12.11681 -11.84928 -11.71911 -11.39523 -11.08225 -11.01757 -10.78539 -10.64464 -10.49733 -10.38092 -10.29609 -10.05521 -9.75581 -8.88677 -8.66860 -8.29278 -8.27920 -7.02550 -4.06577 2.41523 2.79842 3.26453 3.30926 3.46763 4.10571 4.25693 4.30160 4.63254 4.65705 4.71600 4.89838 4.95835 5.07478 5.15384 5.22519 5.26346 5.35027 5.36596 5.55137 5.69550 5.71559 5.75865 5.77863 5.84893 5.91447 5.98707 6.05101 6.08192 6.27517 6.36111 6.91895 7.46403 7.56372 7.69187 7.85940 8.30555 8.51928 8.91431 9.22722 9.65807 10.39421 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039270 B = 0.004236 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.843930 B = 6608.642689 C = 6743.528315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.049 0.951 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.108 4.108 7 C 0.063 3.937 8 H 0.089 0.911 9 C -0.191 4.191 10 N -0.284 5.284 11 N -0.565 5.565 12 C 0.531 3.469 13 O -0.523 6.523 14 C 0.399 3.601 15 O -0.593 6.593 16 N -0.510 5.510 17 C -0.384 4.384 18 H 0.109 0.891 19 C 0.000 4.000 20 N -0.867 5.867 21 Si 1.098 2.902 22 H -0.280 1.280 23 H -0.277 1.277 24 H -0.279 1.279 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 3.845 13.806 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.162 4.162 6 C -0.146 4.146 7 C -0.045 4.045 8 H 0.107 0.893 9 C -0.250 4.250 10 N -0.101 5.101 11 N -0.311 5.311 12 C 0.315 3.685 13 O -0.396 6.396 14 C 0.183 3.817 15 O -0.481 6.481 16 N -0.146 5.146 17 C -0.514 4.514 18 H 0.127 0.873 19 C -0.207 4.207 20 N -0.503 5.503 21 Si 0.923 3.077 22 H -0.206 1.206 23 H -0.203 1.203 24 H -0.205 1.205 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.224 0.776 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.910 2.926 12.524 15.646 hybrid contribution 1.420 1.110 1.484 2.335 sum 10.330 4.037 14.008 17.867 Atomic orbital electron populations 1.21806 0.93643 1.03142 1.01686 1.22147 0.96399 0.96203 0.89971 0.93299 1.21608 0.95318 1.01846 0.95850 1.21658 0.95857 1.00852 0.97808 1.21576 0.99751 1.00264 0.93038 1.22229 0.86648 0.95491 1.00164 0.89291 1.22506 1.02338 0.97853 1.02265 1.63012 1.05532 1.48363 0.93177 1.44951 1.49619 1.15416 1.21126 1.20528 0.78297 0.85675 0.83993 1.90665 1.59039 1.17416 1.72502 1.18780 0.88351 0.87787 0.86781 1.90585 1.65451 1.17678 1.74384 1.41565 1.38276 1.13929 1.20799 1.20781 1.28202 1.01827 1.00626 0.87283 1.26925 0.95243 0.94671 1.03891 1.70665 1.40757 1.13329 1.25578 0.83047 0.76218 0.75258 0.73215 1.20636 1.20265 1.20471 0.91440 0.92247 0.92353 0.90619 0.91197 0.91579 0.91922 0.90644 0.91108 0.91736 0.91512 0.92325 0.76963 0.77639 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.99 37.16 0.33 -1.69 16 2 C 0.06 0.78 2.34 -67.72 -0.16 0.62 16 3 H 0.05 0.59 6.19 -51.93 -0.32 0.27 16 4 C -0.11 -1.11 5.37 -26.64 -0.14 -1.25 16 5 C -0.12 -1.10 5.70 -26.60 -0.15 -1.25 16 6 C -0.11 -1.09 5.61 -26.65 -0.15 -1.23 16 7 C 0.06 0.79 3.15 -67.72 -0.21 0.58 16 8 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 9 C -0.19 -2.03 8.29 37.16 0.31 -1.72 16 10 N -0.28 -4.33 4.20 -99.77 -0.42 -4.75 16 11 N -0.56 -10.10 3.56 30.76 0.11 -9.99 16 12 C 0.53 11.69 7.67 -11.87 -0.09 11.60 16 13 O -0.52 -12.46 16.79 5.41 0.09 -12.37 16 14 C 0.40 10.08 7.82 -11.88 -0.09 9.99 16 15 O -0.59 -15.95 16.03 5.36 0.09 -15.87 16 16 N -0.51 -13.53 5.24 -11.59 -0.06 -13.59 16 17 C -0.38 -10.64 9.67 -15.15 -0.15 -10.78 16 18 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 19 C 0.00 0.00 5.51 -17.40 -0.10 -0.09 16 20 N -0.87 -23.94 13.66 55.53 0.76 -23.18 16 21 Si 1.10 23.15 29.93 -169.99 -5.09 18.06 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.94 7.33 -51.93 -0.38 0.56 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 4.80 -51.93 -0.25 0.39 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.69 6.97 -51.93 -0.36 0.33 16 37 H 0.39 6.70 6.97 -185.16 -1.29 5.41 16 38 H 0.39 10.09 6.18 -40.82 -0.25 9.84 16 39 H 0.27 7.43 6.78 -40.82 -0.28 7.16 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -31.24 313.06 -6.85 -38.09 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -6.45 Total: 14.13 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.60 Total: 4.75 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.39 Total: -51.51 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.18 Total: -28.23 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.09 Total: 18.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.24 -6.85 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147706001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.994 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds