Wall clock time and date at job start Mon Mar 30 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.45311 * 2 1 4 4 C 1.53040 * 109.45780 * 119.97016 * 2 1 3 5 5 C 1.53128 * 109.27536 * 179.19790 * 4 2 1 6 6 C 1.53120 * 109.15849 * 302.34538 * 5 4 2 7 7 C 1.53036 * 109.27803 * 57.65428 * 6 5 4 8 8 H 1.08997 * 109.45460 * 180.80500 * 7 6 5 9 9 C 1.53005 * 109.46205 * 60.83792 * 7 6 5 10 10 N 1.46836 * 109.46402 * 240.02551 * 2 1 3 11 11 N 1.36603 * 111.00266 * 54.14626 * 10 2 1 12 12 C 1.34779 * 119.99840 * 244.21122 * 11 10 2 13 13 O 1.21444 * 120.00152 * 359.97438 * 12 11 10 14 14 C 1.48830 * 119.99729 * 179.97438 * 12 11 10 15 15 O 1.21501 * 120.00029 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00016 * 179.97438 * 14 12 11 17 17 C 1.36117 * 120.00035 * 179.97438 * 16 14 12 18 18 H 1.07998 * 120.00023 * 0.02562 * 17 16 14 19 19 C 1.39587 * 119.99777 * 180.02562 * 17 16 14 20 20 N 1.31014 * 120.00294 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99592 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99773 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99766 * 21 19 17 25 25 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47036 * 299.97796 * 1 2 3 27 27 H 1.09004 * 109.46659 * 59.97570 * 1 2 3 28 28 H 1.08996 * 109.50111 * 59.25735 * 4 2 1 29 29 H 1.09001 * 109.53904 * 299.15401 * 4 2 1 30 30 H 1.09001 * 109.51837 * 182.44287 * 5 4 2 31 31 H 1.09001 * 109.52070 * 62.24900 * 5 4 2 32 32 H 1.09004 * 109.50255 * 297.71623 * 6 5 4 33 33 H 1.08998 * 109.50109 * 177.59474 * 6 5 4 34 34 H 1.09006 * 109.46877 * 299.94585 * 9 7 6 35 35 H 1.08999 * 109.47167 * 59.94150 * 9 7 6 36 36 H 1.09003 * 109.47165 * 179.97438 * 9 7 6 37 37 H 0.96996 * 119.99767 * 64.21178 * 11 10 2 38 38 H 0.97004 * 119.99830 * 0.02562 * 16 14 12 39 39 H 0.97006 * 119.99572 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5710 -0.7360 1.2358 6 6 4.0548 -1.4188 -0.0465 7 6 3.4865 -0.6777 -1.2589 8 1 3.8176 -1.1700 -2.1733 9 6 3.9833 0.7694 -1.2507 10 7 2.0193 -0.6917 -1.1993 11 7 1.4782 -0.1513 -2.3312 12 6 0.6666 -0.8931 -3.1106 13 8 0.4167 -2.0421 -2.8069 14 6 0.0766 -0.3042 -4.3435 15 8 0.3270 0.8452 -4.6476 16 7 -0.7346 -1.0461 -5.1232 17 6 -1.2746 -0.5073 -6.2505 18 1 -1.0528 0.5146 -6.5204 19 6 -2.1152 -1.2756 -7.0578 20 7 -2.3840 -2.5154 -6.7307 21 14 -2.8557 -0.5363 -8.6052 22 1 -4.1591 0.0953 -8.2773 23 1 -3.0640 -1.6060 -9.6141 24 1 -1.9329 0.4893 -9.1545 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6658 -1.7446 1.2577 29 1 1.6894 -0.1987 2.1404 30 1 3.9378 -1.2862 2.1022 31 1 3.9456 0.2871 1.2673 32 1 3.7125 -2.4536 -0.0592 33 1 5.1439 -1.3946 -0.0829 34 1 3.6520 1.2621 -0.3365 35 1 5.0723 0.7800 -1.2949 36 1 3.5789 1.2973 -2.1144 37 1 1.6781 0.7663 -2.5739 38 1 -0.9342 -1.9639 -4.8806 39 1 -1.9991 -2.8994 -5.9273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147706001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:36 Heat of formation + Delta-G solvation = -68.073960 kcal Electronic energy + Delta-G solvation = -21519.787568 eV Core-core repulsion = 18269.280158 eV Total energy + Delta-G solvation = -3250.507410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92026 -40.59626 -38.92800 -36.83785 -35.88481 -34.28863 -33.32914 -31.73778 -29.26545 -27.57773 -27.48743 -25.14000 -23.59404 -22.75636 -21.46842 -20.51490 -20.22146 -19.23828 -18.19494 -17.34350 -17.09878 -16.71252 -16.25335 -15.92399 -15.50529 -15.37943 -15.17467 -14.57967 -14.46687 -14.38221 -13.69474 -13.50672 -13.49212 -13.13914 -12.88928 -12.82936 -12.61875 -12.46229 -12.04847 -11.95888 -11.88347 -11.68677 -11.59820 -11.48719 -11.34066 -10.40290 -10.36718 -10.33574 -9.74488 -9.16518 -6.24825 0.51428 1.28270 1.56068 1.63555 1.85142 2.32580 2.37708 2.86862 3.08209 3.26771 3.72572 3.75402 3.81158 3.89267 4.00857 4.13542 4.27600 4.39317 4.46082 4.51276 4.63360 4.72862 4.86965 4.94312 4.97367 5.04052 5.10541 5.16558 5.21049 5.27309 5.35937 5.49192 5.69393 5.87604 5.93558 5.99424 6.28455 6.46376 7.11262 7.30909 7.57602 8.27268 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039270 B = 0.004236 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.843930 B = 6608.642689 C = 6743.528315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.104 4.104 7 C 0.058 3.942 8 H 0.067 0.933 9 C -0.184 4.184 10 N -0.306 5.306 11 N -0.545 5.545 12 C 0.539 3.461 13 O -0.545 6.545 14 C 0.400 3.600 15 O -0.610 6.610 16 N -0.522 5.522 17 C -0.415 4.415 18 H 0.095 0.905 19 C -0.030 4.030 20 N -0.884 5.884 21 Si 1.145 2.855 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.268 1.268 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.394 0.606 38 H 0.389 0.611 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.342 4.868 15.356 19.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.048 4.048 3 H 0.082 0.918 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.050 4.050 8 H 0.086 0.914 9 C -0.243 4.243 10 N -0.124 5.124 11 N -0.289 5.289 12 C 0.322 3.678 13 O -0.420 6.420 14 C 0.184 3.816 15 O -0.499 6.499 16 N -0.158 5.158 17 C -0.545 4.545 18 H 0.113 0.887 19 C -0.233 4.233 20 N -0.520 5.520 21 Si 0.962 3.038 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.192 1.192 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.235 0.765 38 H 0.224 0.776 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.181 3.971 14.114 17.850 hybrid contribution 1.135 0.816 1.141 1.805 sum 11.316 4.787 15.255 19.588 Atomic orbital electron populations 1.21815 0.94875 1.01679 1.01779 1.22300 0.95447 0.97279 0.89802 0.91752 1.21635 0.96605 1.00911 0.95100 1.21664 0.94430 1.01883 0.97630 1.21598 1.01045 0.99113 0.92480 1.22346 0.84744 0.97170 1.00745 0.91422 1.22453 1.03618 0.96012 1.02181 1.63111 1.07463 1.49269 0.92593 1.44685 1.47855 1.14904 1.21433 1.19849 0.78968 0.85484 0.83532 1.90655 1.60263 1.18185 1.72936 1.19413 0.87362 0.87464 0.87365 1.90553 1.65785 1.18480 1.75119 1.41646 1.38960 1.14078 1.21128 1.20872 1.29966 1.01723 1.01917 0.88692 1.28445 0.94581 0.94171 1.06064 1.70765 1.41534 1.14131 1.25578 0.82537 0.76346 0.75101 0.69862 1.18929 1.19476 1.19222 0.93636 0.89232 0.95167 0.92096 0.88673 0.89497 0.90406 0.92141 0.88678 0.90331 0.89396 0.93978 0.76523 0.77634 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.99 71.98 0.65 -3.28 16 2 C 0.06 1.40 2.34 44.94 0.10 1.51 16 3 H 0.06 1.36 6.19 -2.39 -0.01 1.34 16 4 C -0.10 -1.83 5.37 30.65 0.16 -1.67 16 5 C -0.12 -1.63 5.70 30.68 0.17 -1.46 16 6 C -0.10 -1.82 5.61 30.65 0.17 -1.65 16 7 C 0.06 1.36 3.15 44.94 0.14 1.51 16 8 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 9 C -0.18 -3.46 8.29 71.98 0.60 -2.86 16 10 N -0.31 -9.16 4.20 -469.58 -1.97 -11.13 16 11 N -0.54 -19.65 3.56 -174.91 -0.62 -20.28 16 12 C 0.54 24.38 7.67 87.08 0.67 25.05 16 13 O -0.54 -26.74 16.79 -3.54 -0.06 -26.80 16 14 C 0.40 20.82 7.82 87.08 0.68 21.50 16 15 O -0.61 -33.61 16.03 -3.72 -0.06 -33.67 16 16 N -0.52 -28.74 5.24 -308.88 -1.62 -30.36 16 17 C -0.42 -23.63 9.67 84.35 0.82 -22.82 16 18 H 0.10 5.58 7.15 -2.91 -0.02 5.56 16 19 C -0.03 -1.62 5.51 85.14 0.47 -1.15 16 20 N -0.88 -49.60 13.66 21.77 0.30 -49.30 16 21 Si 1.14 46.20 29.93 68.60 2.05 48.26 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.03 0.97 7.33 -2.38 -0.02 0.95 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.89 6.56 -2.39 -0.02 0.87 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.26 4.80 -2.38 -0.01 1.25 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 0.93 6.97 -2.39 -0.02 0.91 16 37 H 0.39 13.56 6.97 -215.50 -1.50 12.06 16 38 H 0.39 21.10 6.18 -92.71 -0.57 20.53 16 39 H 0.26 14.82 6.78 -92.70 -0.63 14.19 16 Total: -1.00 -69.13 313.06 1.80 -67.33 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -0.85 Total: 41.27 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 4.64 Total: 14.68 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.92 Total: -111.07 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -0.12 Total: -60.47 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.05 Total: 48.26 kcal Total: -69.13 1.80 -67.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147706001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds