Wall clock time and date at job start Mon Mar 30 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46646 * 2 1 4 4 C 1.53039 * 109.45951 * 240.02320 * 2 1 3 5 5 C 1.53123 * 109.27546 * 180.81892 * 4 2 1 6 6 C 1.53120 * 109.21163 * 57.62218 * 5 4 2 7 7 C 1.53048 * 109.27450 * 302.43753 * 6 5 4 8 8 H 1.09000 * 109.46050 * 179.13236 * 7 6 5 9 9 C 1.52992 * 109.41449 * 299.07030 * 7 6 5 10 10 N 1.46842 * 109.44983 * 119.97557 * 2 1 3 11 11 N 1.36598 * 111.00526 * 305.84774 * 10 2 1 12 12 C 1.34780 * 119.99999 * 119.99872 * 11 10 2 13 13 O 1.21435 * 120.00191 * 0.02562 * 12 11 10 14 14 C 1.48831 * 119.99692 * 180.02562 * 12 11 10 15 15 O 1.21500 * 120.00131 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99692 * 180.02562 * 14 12 11 17 17 C 1.36122 * 119.99879 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00010 * 0.02562 * 17 16 14 19 19 C 1.39581 * 120.00107 * 179.97438 * 17 16 14 20 20 N 1.31012 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00221 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47264 * 59.99674 * 21 19 17 23 23 H 1.48497 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46894 * 299.99932 * 21 19 17 25 25 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47189 * 299.97901 * 1 2 3 27 27 H 1.09007 * 109.46966 * 59.97402 * 1 2 3 28 28 H 1.08999 * 109.50420 * 60.88088 * 4 2 1 29 29 H 1.09002 * 109.53427 * 300.77590 * 4 2 1 30 30 H 1.09002 * 109.52319 * 177.56011 * 5 4 2 31 31 H 1.08995 * 109.52318 * 297.68693 * 5 4 2 32 32 H 1.09000 * 109.50719 * 62.32149 * 6 5 4 33 33 H 1.09003 * 109.50116 * 182.43702 * 6 5 4 34 34 H 1.08993 * 109.47360 * 180.08465 * 9 7 6 35 35 H 1.09003 * 109.47347 * 300.08781 * 9 7 6 36 36 H 1.09005 * 109.46911 * 60.08419 * 9 7 6 37 37 H 0.97001 * 119.99858 * 300.00435 * 11 10 2 38 38 H 0.96994 * 119.99779 * 0.02562 * 16 14 12 39 39 H 0.97004 * 120.00460 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7364 -1.2354 6 6 4.0558 -1.4184 0.0470 7 6 3.4862 -0.6780 1.2593 8 1 3.8170 -1.1703 2.1738 9 6 3.9831 0.7689 1.2511 10 7 2.0190 -0.6918 1.1994 11 7 1.4778 -0.1513 2.3312 12 6 0.7352 -0.9170 3.1551 13 8 0.5475 -2.0874 2.8915 14 6 0.1451 -0.3279 4.3879 15 8 0.3333 0.8430 4.6519 16 7 -0.5971 -1.0937 5.2121 17 6 -1.1364 -0.5551 6.3399 18 1 -0.9698 0.4860 6.5741 19 6 -1.9055 -1.3480 7.1932 20 7 -2.1080 -2.6108 6.9088 21 14 -2.6461 -0.6087 8.7405 22 1 -3.5547 0.5061 8.3706 23 1 -3.4122 -1.6513 9.4695 24 1 -1.5596 -0.0934 9.6119 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.6897 -0.1981 -2.1399 29 1 1.6657 -1.7447 -1.2583 30 1 3.9379 -1.2867 -2.1018 31 1 3.9459 0.2865 -1.2681 32 1 3.7143 -2.4534 0.0603 33 1 5.1449 -1.3935 0.0829 34 1 3.5792 1.2967 2.1150 35 1 5.0722 0.7794 1.2955 36 1 3.6521 1.2616 0.3369 37 1 1.6280 0.7835 2.5419 38 1 -0.7464 -2.0288 5.0019 39 1 -2.6422 -3.1620 7.5019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147706220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:39 Heat of formation + Delta-G solvation = -46.450770 kcal Electronic energy + Delta-G solvation = -21466.271291 eV Core-core repulsion = 18216.701533 eV Total energy + Delta-G solvation = -3249.569758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46442 -38.76734 -36.94051 -34.82651 -34.06517 -33.24757 -31.44050 -30.46041 -27.99316 -26.62612 -25.75214 -23.57682 -22.27989 -21.54896 -19.45917 -19.10838 -18.30673 -17.35585 -16.39870 -15.82619 -15.47339 -15.05219 -14.67349 -14.46323 -13.96042 -13.85665 -13.73396 -13.50673 -12.85961 -12.69697 -12.53384 -12.37980 -12.06691 -11.78810 -11.76459 -11.66856 -11.17202 -10.96419 -10.72929 -10.59994 -10.55958 -10.42622 -10.40064 -10.23088 -9.70500 -8.78930 -8.60051 -8.22227 -8.19321 -6.66119 -3.98979 2.51960 2.87728 3.17092 3.18733 3.21989 4.02945 4.31838 4.36285 4.69306 4.71991 4.78322 4.96100 5.06073 5.15212 5.20086 5.27790 5.31524 5.40177 5.41816 5.60349 5.74224 5.76858 5.80923 5.89576 5.96380 6.01968 6.06531 6.10339 6.13732 6.32504 6.40690 6.98324 7.31517 7.63734 7.67425 7.87206 8.37980 8.85431 9.05019 9.32962 9.85118 10.48584 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.004206 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.158540 B = 6656.111746 C = 6757.048654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.049 0.951 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.108 4.108 7 C 0.063 3.937 8 H 0.089 0.911 9 C -0.190 4.190 10 N -0.283 5.283 11 N -0.566 5.566 12 C 0.530 3.470 13 O -0.520 6.520 14 C 0.398 3.602 15 O -0.600 6.600 16 N -0.497 5.497 17 C -0.307 4.307 18 H 0.112 0.888 19 C 0.032 3.968 20 N -0.868 5.868 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.390 0.610 38 H 0.405 0.595 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.165 3.483 -13.718 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.162 4.162 6 C -0.146 4.146 7 C -0.046 4.046 8 H 0.107 0.893 9 C -0.249 4.249 10 N -0.100 5.100 11 N -0.313 5.313 12 C 0.314 3.686 13 O -0.393 6.393 14 C 0.181 3.819 15 O -0.488 6.488 16 N -0.131 5.131 17 C -0.438 4.438 18 H 0.130 0.870 19 C -0.175 4.175 20 N -0.506 5.506 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.194 1.194 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.241 0.759 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.850 2.717 -13.634 16.479 hybrid contribution 0.003 1.053 0.676 1.251 sum 8.853 3.769 -12.958 16.140 Atomic orbital electron populations 1.21807 0.93615 1.03141 1.01723 1.22131 0.96406 0.96178 0.89952 0.93311 1.21605 0.95311 1.01843 0.95854 1.21652 0.95868 1.00829 0.97812 1.21576 0.99699 1.00299 0.93067 1.22239 0.86853 0.95403 1.00088 0.89308 1.22501 1.02255 0.97936 1.02229 1.63001 1.05427 1.48400 0.93214 1.44974 1.53167 1.13017 1.20109 1.20574 0.78070 0.86007 0.83904 1.90672 1.58214 1.16308 1.74076 1.18874 0.88811 0.87633 0.86610 1.90577 1.65817 1.16309 1.76127 1.41523 1.39763 1.12928 1.18891 1.19825 1.27808 0.98022 0.98096 0.87029 1.25578 0.96739 0.95138 1.00037 1.69477 1.36783 1.05971 1.38356 0.85781 0.79146 0.78587 0.79987 1.19382 1.20583 1.19390 0.91469 0.92201 0.92308 0.91243 0.90611 0.91648 0.91966 0.90651 0.91177 0.92294 0.91626 0.91812 0.77026 0.75918 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.10 37.16 0.34 -1.67 16 2 C 0.06 0.79 2.34 -67.72 -0.16 0.63 16 3 H 0.05 0.59 6.19 -51.93 -0.32 0.26 16 4 C -0.11 -1.11 5.38 -26.65 -0.14 -1.26 16 5 C -0.12 -1.12 5.69 -26.61 -0.15 -1.27 16 6 C -0.11 -1.11 5.61 -26.64 -0.15 -1.26 16 7 C 0.06 0.80 3.15 -67.72 -0.21 0.59 16 8 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 9 C -0.19 -2.07 8.29 37.15 0.31 -1.76 16 10 N -0.28 -4.37 4.20 -99.77 -0.42 -4.79 16 11 N -0.57 -10.19 3.41 30.76 0.10 -10.08 16 12 C 0.53 11.79 7.97 -11.87 -0.09 11.69 16 13 O -0.52 -12.62 16.79 5.42 0.09 -12.53 16 14 C 0.40 10.05 7.82 -11.87 -0.09 9.96 16 15 O -0.60 -16.03 16.03 5.37 0.09 -15.94 16 16 N -0.50 -13.31 5.25 -11.59 -0.06 -13.37 16 17 C -0.31 -8.45 9.67 -15.15 -0.15 -8.59 16 18 H 0.11 3.12 7.15 -52.48 -0.38 2.75 16 19 C 0.03 0.84 5.51 -17.40 -0.10 0.74 16 20 N -0.87 -23.25 13.03 55.53 0.72 -22.53 16 21 Si 0.94 20.05 29.56 -169.99 -5.02 15.02 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.95 7.46 -51.93 -0.39 0.56 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.71 7.05 -51.93 -0.37 0.34 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.64 4.80 -51.93 -0.25 0.39 16 37 H 0.39 6.72 7.12 -185.16 -1.32 5.40 16 38 H 0.41 10.97 7.35 -40.82 -0.30 10.67 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.29 315.37 -6.94 -37.23 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.60 Total: 14.44 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.60 Total: 7.79 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.35 Total: -50.78 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: 0.18 Total: -28.47 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.29 -6.94 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147706220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.219 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds