Wall clock time and date at job start Mon Mar 30 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46646 * 2 1 4 4 C 1.53039 * 109.45951 * 240.02320 * 2 1 3 5 5 C 1.53123 * 109.27546 * 180.81892 * 4 2 1 6 6 C 1.53120 * 109.21163 * 57.62218 * 5 4 2 7 7 C 1.53048 * 109.27450 * 302.43753 * 6 5 4 8 8 H 1.09000 * 109.46050 * 179.13236 * 7 6 5 9 9 C 1.52992 * 109.41449 * 299.07030 * 7 6 5 10 10 N 1.46842 * 109.44983 * 119.97557 * 2 1 3 11 11 N 1.36598 * 111.00526 * 305.84774 * 10 2 1 12 12 C 1.34780 * 119.99999 * 119.99872 * 11 10 2 13 13 O 1.21435 * 120.00191 * 0.02562 * 12 11 10 14 14 C 1.48831 * 119.99692 * 180.02562 * 12 11 10 15 15 O 1.21500 * 120.00131 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99692 * 180.02562 * 14 12 11 17 17 C 1.36122 * 119.99879 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00010 * 0.02562 * 17 16 14 19 19 C 1.39581 * 120.00107 * 179.97438 * 17 16 14 20 20 N 1.31012 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00221 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47264 * 59.99674 * 21 19 17 23 23 H 1.48497 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46894 * 299.99932 * 21 19 17 25 25 H 1.08999 * 109.47559 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47189 * 299.97901 * 1 2 3 27 27 H 1.09007 * 109.46966 * 59.97402 * 1 2 3 28 28 H 1.08999 * 109.50420 * 60.88088 * 4 2 1 29 29 H 1.09002 * 109.53427 * 300.77590 * 4 2 1 30 30 H 1.09002 * 109.52319 * 177.56011 * 5 4 2 31 31 H 1.08995 * 109.52318 * 297.68693 * 5 4 2 32 32 H 1.09000 * 109.50719 * 62.32149 * 6 5 4 33 33 H 1.09003 * 109.50116 * 182.43702 * 6 5 4 34 34 H 1.08993 * 109.47360 * 180.08465 * 9 7 6 35 35 H 1.09003 * 109.47347 * 300.08781 * 9 7 6 36 36 H 1.09005 * 109.46911 * 60.08419 * 9 7 6 37 37 H 0.97001 * 119.99858 * 300.00435 * 11 10 2 38 38 H 0.96994 * 119.99779 * 0.02562 * 16 14 12 39 39 H 0.97004 * 120.00460 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5709 -0.7364 -1.2354 6 6 4.0558 -1.4184 0.0470 7 6 3.4862 -0.6780 1.2593 8 1 3.8170 -1.1703 2.1738 9 6 3.9831 0.7689 1.2511 10 7 2.0190 -0.6918 1.1994 11 7 1.4778 -0.1513 2.3312 12 6 0.7352 -0.9170 3.1551 13 8 0.5475 -2.0874 2.8915 14 6 0.1451 -0.3279 4.3879 15 8 0.3333 0.8430 4.6519 16 7 -0.5971 -1.0937 5.2121 17 6 -1.1364 -0.5551 6.3399 18 1 -0.9698 0.4860 6.5741 19 6 -1.9055 -1.3480 7.1932 20 7 -2.1080 -2.6108 6.9088 21 14 -2.6461 -0.6087 8.7405 22 1 -3.5547 0.5061 8.3706 23 1 -3.4122 -1.6513 9.4695 24 1 -1.5596 -0.0934 9.6119 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.6897 -0.1981 -2.1399 29 1 1.6657 -1.7447 -1.2583 30 1 3.9379 -1.2867 -2.1018 31 1 3.9459 0.2865 -1.2681 32 1 3.7143 -2.4534 0.0603 33 1 5.1449 -1.3935 0.0829 34 1 3.5792 1.2967 2.1150 35 1 5.0722 0.7794 1.2955 36 1 3.6521 1.2616 0.3369 37 1 1.6280 0.7835 2.5419 38 1 -0.7464 -2.0288 5.0019 39 1 -2.6422 -3.1620 7.5019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147706220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:38 Heat of formation + Delta-G solvation = -67.721881 kcal Electronic energy + Delta-G solvation = -21467.193676 eV Core-core repulsion = 18216.701533 eV Total energy + Delta-G solvation = -3250.492143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82158 -40.45511 -38.78532 -36.50845 -35.74712 -34.24250 -33.48633 -31.67424 -29.21348 -27.70613 -27.53405 -25.07015 -23.49765 -22.67825 -21.20124 -20.49145 -20.11823 -18.83658 -17.96380 -17.39124 -17.03025 -16.54660 -16.15170 -15.89990 -15.72646 -15.17179 -14.93492 -14.49461 -14.43057 -14.28132 -13.67113 -13.65367 -13.45024 -13.08845 -12.96278 -12.78036 -12.58898 -12.57827 -12.27760 -12.11403 -11.91915 -11.66315 -11.55591 -11.45809 -11.30473 -10.30922 -10.27409 -10.25516 -9.68289 -8.66125 -6.11648 0.62564 1.33699 1.46039 1.50086 1.57845 2.26014 2.38986 3.01810 3.15325 3.36688 3.78810 3.85411 3.89253 4.02723 4.04877 4.17900 4.31854 4.42938 4.49777 4.54994 4.68219 4.77580 4.90978 4.98134 5.00963 5.07369 5.14257 5.21104 5.24516 5.25010 5.30593 5.52635 5.65672 5.93434 6.06269 6.09763 6.38101 6.85624 7.21248 7.42493 7.78204 8.49416 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.004206 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.158540 B = 6656.111746 C = 6757.048654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.104 4.104 7 C 0.057 3.943 8 H 0.065 0.935 9 C -0.183 4.183 10 N -0.306 5.306 11 N -0.546 5.546 12 C 0.538 3.462 13 O -0.546 6.546 14 C 0.394 3.606 15 O -0.617 6.617 16 N -0.507 5.507 17 C -0.346 4.346 18 H 0.100 0.900 19 C -0.003 4.003 20 N -0.895 5.895 21 Si 1.011 2.989 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.264 1.264 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.393 0.607 38 H 0.401 0.599 39 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 4.410 -14.990 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 H 0.083 0.917 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.051 4.051 8 H 0.083 0.917 9 C -0.242 4.242 10 N -0.125 5.125 11 N -0.290 5.290 12 C 0.321 3.679 13 O -0.421 6.421 14 C 0.178 3.822 15 O -0.507 6.507 16 N -0.141 5.141 17 C -0.476 4.476 18 H 0.118 0.882 19 C -0.208 4.208 20 N -0.532 5.532 21 Si 0.831 3.169 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.188 1.188 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.235 0.765 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.840 3.664 -14.936 18.258 hybrid contribution -0.240 0.759 0.971 1.256 sum 9.600 4.423 -13.965 17.515 Atomic orbital electron populations 1.21816 0.94739 1.01725 1.01886 1.22291 0.95553 0.97241 0.89703 0.91731 1.21633 0.96530 1.00929 0.95155 1.21656 0.94515 1.01852 0.97561 1.21595 1.00964 0.99125 0.92565 1.22339 0.85047 0.97091 1.00576 0.91665 1.22443 1.03494 0.96069 1.02181 1.63091 1.07292 1.49378 0.92695 1.44690 1.51429 1.12550 1.20355 1.19940 0.78602 0.85774 0.83588 1.90655 1.59642 1.17187 1.74632 1.19429 0.88145 0.87396 0.87279 1.90540 1.66307 1.17032 1.76857 1.41618 1.40363 1.12769 1.19335 1.19963 1.30086 0.98074 0.99470 0.88209 1.26553 0.96104 0.95340 1.02767 1.69550 1.36930 1.07088 1.39644 0.84743 0.78373 0.78102 0.75641 1.18801 1.19074 1.18819 0.93639 0.94920 0.89241 0.88643 0.92095 0.89555 0.90430 0.92211 0.88797 0.93979 0.89561 0.90309 0.76566 0.76453 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.10 71.98 0.66 -3.26 16 2 C 0.06 1.43 2.34 44.94 0.11 1.53 16 3 H 0.06 1.37 6.19 -2.39 -0.01 1.36 16 4 C -0.10 -1.86 5.38 30.65 0.16 -1.70 16 5 C -0.12 -1.69 5.69 30.68 0.17 -1.51 16 6 C -0.10 -1.90 5.61 30.65 0.17 -1.73 16 7 C 0.06 1.41 3.15 44.94 0.14 1.55 16 8 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 9 C -0.18 -3.57 8.29 71.98 0.60 -2.98 16 10 N -0.31 -9.36 4.20 -469.57 -1.97 -11.33 16 11 N -0.55 -20.03 3.41 -174.92 -0.60 -20.63 16 12 C 0.54 24.80 7.97 87.08 0.69 25.49 16 13 O -0.55 -27.51 16.79 -3.51 -0.06 -27.57 16 14 C 0.39 20.70 7.82 87.08 0.68 21.38 16 15 O -0.62 -34.05 16.03 -3.71 -0.06 -34.11 16 16 N -0.51 -28.33 5.25 -308.87 -1.62 -29.95 16 17 C -0.35 -19.63 9.67 84.35 0.82 -18.82 16 18 H 0.10 5.78 7.15 -2.91 -0.02 5.75 16 19 C 0.00 -0.16 5.51 85.14 0.47 0.31 16 20 N -0.89 -48.46 13.03 21.76 0.28 -48.17 16 21 Si 1.01 40.84 29.56 68.60 2.03 42.87 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.03 1.04 7.46 -2.39 -0.02 1.02 16 27 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.92 6.56 -2.39 -0.02 0.90 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 0.96 7.05 -2.39 -0.02 0.94 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.30 4.80 -2.38 -0.01 1.29 16 37 H 0.39 13.74 7.12 -215.50 -1.54 12.21 16 38 H 0.40 22.72 7.35 -92.71 -0.68 22.04 16 39 H 0.29 14.36 8.30 -92.70 -0.77 13.59 16 Total: -1.00 -67.39 315.37 1.54 -65.85 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.14 Total: 42.77 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 4.67 Total: 20.26 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.90 Total: -110.08 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -0.12 Total: -61.67 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -67.39 1.54 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147706220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.867 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds