Wall clock time and date at job start Mon Mar 30 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48491 * 109.47118 * 270.00219 * 3 2 1 5 5 H 1.48507 * 109.46809 * 30.00066 * 3 2 1 6 6 H 1.48496 * 109.46888 * 149.99737 * 3 2 1 7 7 C 1.37877 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00217 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99485 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47214 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.50707 * 120.00050 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.47056 * 179.97438 * 13 11 10 15 15 C 1.46904 * 111.00011 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47192 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99803 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.47021 * 125.65024 * 359.41182 * 18 16 15 20 20 C 1.54315 * 107.27409 * 180.97007 * 19 18 16 21 21 C 1.55154 * 102.86480 * 22.53033 * 20 19 18 22 22 C 1.47426 * 125.64505 * 179.72939 * 18 16 15 23 23 H 0.96998 * 119.99291 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47357 * 60.00234 * 9 7 2 25 25 H 1.08998 * 109.47571 * 300.00175 * 9 7 2 26 26 H 0.97003 * 120.00037 * 359.97438 * 10 9 7 27 27 H 1.08999 * 109.46702 * 59.99887 * 13 11 10 28 28 H 1.08998 * 109.47233 * 300.00436 * 13 11 10 29 29 H 1.00893 * 111.00470 * 303.95870 * 14 13 11 30 30 H 1.09009 * 109.46542 * 60.00300 * 15 14 13 31 31 H 1.08998 * 109.47050 * 300.00834 * 15 14 13 32 32 H 1.08996 * 109.88207 * 300.52041 * 19 18 16 33 33 H 1.09003 * 109.87977 * 61.68746 * 19 18 16 34 34 H 1.08996 * 110.92423 * 264.11532 * 20 19 18 35 35 H 1.09001 * 110.58635 * 140.78603 * 20 19 18 36 36 H 1.08997 * 111.00532 * 206.22526 * 21 20 19 37 37 H 1.09003 * 111.00563 * 82.37309 * 21 20 19 38 38 H 1.09005 * 110.36361 * 274.67139 * 22 18 16 39 39 H 1.09001 * 110.37156 * 36.87958 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8998 0.0025 13 6 5.8273 -4.2425 0.0024 14 7 7.2962 -4.2425 0.0029 15 6 7.8227 -5.6140 0.0040 16 6 9.3291 -5.5738 0.0050 17 8 9.9073 -4.5076 0.0054 18 7 10.0338 -6.7226 0.0004 19 6 9.4636 -8.0777 0.0064 20 6 10.6440 -9.0716 0.0226 21 6 11.8038 -8.2209 0.6045 22 6 11.5043 -6.8285 -0.0049 23 1 -0.4849 0.8401 0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8753 -0.6805 -0.8888 26 1 3.3695 -3.3126 0.0010 27 1 5.4645 -4.7563 -0.8878 28 1 5.4632 -4.7563 0.8921 29 1 7.6581 -3.7165 -0.7784 30 1 7.4734 -6.1378 -0.8859 31 1 7.4728 -6.1367 0.8941 32 1 8.8472 -8.2166 0.8945 33 1 8.8643 -8.2317 -0.8911 34 1 10.8820 -9.4097 -0.9858 35 1 10.4231 -9.9183 0.6725 36 1 12.7702 -8.5953 0.2672 37 1 11.7571 -8.1892 1.6931 38 1 11.8851 -6.7708 -1.0246 39 1 11.9436 -6.0417 0.6084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159372298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:52 Heat of formation + Delta-G solvation = -65.648199 kcal Electronic energy + Delta-G solvation = -19781.181070 eV Core-core repulsion = 16530.778849 eV Total energy + Delta-G solvation = -3250.402221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28424 -38.97034 -37.69921 -35.34594 -34.18982 -32.34110 -32.13572 -29.80462 -29.03039 -27.50639 -24.92015 -23.26652 -21.85212 -21.57113 -19.98721 -19.53400 -17.79644 -17.10223 -16.99284 -16.21402 -15.96210 -15.40769 -15.25218 -14.76667 -14.13495 -14.11319 -13.91886 -13.73077 -13.53741 -13.29422 -12.83654 -12.68514 -12.44508 -12.27842 -12.14946 -11.84823 -11.68240 -11.65513 -11.24935 -10.99893 -10.73751 -10.03734 -9.94563 -9.48040 -9.18021 -8.96853 -8.76041 -8.49455 -8.10985 -6.20267 -4.22374 2.45536 2.57621 3.25628 3.29910 3.35821 3.45771 3.71379 4.02010 4.08889 4.35329 4.38940 4.41007 4.54278 4.77675 4.88921 4.97785 5.05572 5.14927 5.15260 5.24255 5.28543 5.36264 5.38314 5.41083 5.50030 5.51443 5.66202 5.93509 6.65396 6.86636 7.10188 7.16734 7.25623 7.31052 7.41790 7.99202 8.15885 8.53590 8.76737 8.97465 9.40292 10.91607 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057440 B = 0.002694 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.351210 B =10389.622306 C =10812.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.540 6.540 13 C 0.042 3.958 14 N -0.658 5.658 15 C 0.048 3.952 16 C 0.527 3.473 17 O -0.516 6.516 18 N -0.627 5.627 19 C 0.098 3.902 20 C -0.132 4.132 21 C -0.134 4.134 22 C 0.105 3.895 23 H 0.267 0.733 24 H 0.026 0.974 25 H 0.020 0.980 26 H 0.396 0.604 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.361 0.639 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.454 -22.367 -0.666 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.418 6.418 13 C -0.090 4.090 14 N -0.292 5.292 15 C -0.085 4.085 16 C 0.315 3.685 17 O -0.390 6.390 18 N -0.364 5.364 19 C -0.025 4.025 20 C -0.170 4.170 21 C -0.173 4.173 22 C -0.018 4.018 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.229 0.771 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.182 0.818 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.139 -20.791 0.004 28.946 hybrid contribution -0.310 0.086 -0.904 0.959 sum 19.828 -20.705 -0.899 28.682 Atomic orbital electron populations 1.69887 1.06211 1.27421 1.49528 1.24805 0.94806 0.99221 0.93856 0.86807 0.80638 0.83161 0.79056 1.19872 1.20907 1.18413 1.21092 0.88534 0.95199 1.53259 0.90262 1.19484 0.95162 0.78664 0.96818 1.46145 1.05547 1.11029 1.72984 1.20325 0.83209 0.90526 0.77768 1.90688 1.55388 1.45926 1.49779 1.21837 0.88521 0.96034 1.02637 1.59770 1.05781 1.10866 1.52828 1.21775 0.91372 0.92486 1.02834 1.20309 0.89599 0.82404 0.76159 1.90767 1.71517 1.28653 1.48036 1.48545 1.07208 1.05752 1.74899 1.22069 0.96805 0.81674 1.01999 1.22637 0.94493 0.97626 1.02250 1.22800 0.98935 0.94398 1.01123 1.22209 0.80632 0.97830 1.01095 0.92280 0.95648 0.96206 0.77091 0.92432 0.88163 0.81784 0.92320 0.87964 0.91104 0.91247 0.90405 0.89838 0.89730 0.90463 0.91516 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.54 -15.00 9.83 -34.44 -0.34 -15.33 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.53 4.50 -5.19 -0.02 5.50 16 10 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 11 C 0.50 9.65 7.87 -10.98 -0.09 9.56 16 12 O -0.54 -12.93 16.20 5.56 0.09 -12.84 16 13 C 0.04 0.57 6.17 -4.98 -0.03 0.54 16 14 N -0.66 -9.59 5.75 -116.33 -0.67 -10.25 16 15 C 0.05 0.50 5.36 -4.97 -0.03 0.47 16 16 C 0.53 6.58 7.89 -10.98 -0.09 6.49 16 17 O -0.52 -8.92 16.46 5.55 0.09 -8.82 16 18 N -0.63 -5.68 3.33 -170.52 -0.57 -6.25 16 19 C 0.10 0.52 6.48 -3.07 -0.02 0.50 16 20 C -0.13 -0.49 6.95 -24.90 -0.17 -0.66 16 21 C -0.13 -0.62 7.08 -24.58 -0.17 -0.80 16 22 C 0.10 0.82 6.91 -2.53 -0.02 0.80 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.40 6.88 8.32 -40.82 -0.34 6.54 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.36 5.83 8.13 -39.30 -0.32 5.51 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -36.46 328.94 -7.48 -43.94 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.07 Total: 3.56 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.07 Total: 9.17 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.80 Total: -57.09 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.18 Total: -21.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.46 -7.48 -43.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159372298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.710 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds