Wall clock time and date at job start Mon Mar 30 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48491 * 109.47118 * 270.00219 * 3 2 1 5 5 H 1.48507 * 109.46809 * 30.00066 * 3 2 1 6 6 H 1.48496 * 109.46888 * 149.99737 * 3 2 1 7 7 C 1.37877 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00217 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99485 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47214 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.50707 * 120.00050 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.47056 * 179.97438 * 13 11 10 15 15 C 1.46904 * 111.00011 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.47192 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99803 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99675 * 180.28082 * 16 15 14 19 19 C 1.47021 * 125.65024 * 359.41182 * 18 16 15 20 20 C 1.54315 * 107.27409 * 180.97007 * 19 18 16 21 21 C 1.55154 * 102.86480 * 22.53033 * 20 19 18 22 22 C 1.47426 * 125.64505 * 179.72939 * 18 16 15 23 23 H 0.96998 * 119.99291 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47357 * 60.00234 * 9 7 2 25 25 H 1.08998 * 109.47571 * 300.00175 * 9 7 2 26 26 H 0.97003 * 120.00037 * 359.97438 * 10 9 7 27 27 H 1.08999 * 109.46702 * 59.99887 * 13 11 10 28 28 H 1.08998 * 109.47233 * 300.00436 * 13 11 10 29 29 H 1.00893 * 111.00470 * 303.95870 * 14 13 11 30 30 H 1.09009 * 109.46542 * 60.00300 * 15 14 13 31 31 H 1.08998 * 109.47050 * 300.00834 * 15 14 13 32 32 H 1.08996 * 109.88207 * 300.52041 * 19 18 16 33 33 H 1.09003 * 109.87977 * 61.68746 * 19 18 16 34 34 H 1.08996 * 110.92423 * 264.11532 * 20 19 18 35 35 H 1.09001 * 110.58635 * 140.78603 * 20 19 18 36 36 H 1.08997 * 111.00532 * 206.22526 * 21 20 19 37 37 H 1.09003 * 111.00563 * 82.37309 * 21 20 19 38 38 H 1.09005 * 110.36361 * 274.67139 * 22 18 16 39 39 H 1.09001 * 110.37156 * 36.87958 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8998 0.0025 13 6 5.8273 -4.2425 0.0024 14 7 7.2962 -4.2425 0.0029 15 6 7.8227 -5.6140 0.0040 16 6 9.3291 -5.5738 0.0050 17 8 9.9073 -4.5076 0.0054 18 7 10.0338 -6.7226 0.0004 19 6 9.4636 -8.0777 0.0064 20 6 10.6440 -9.0716 0.0226 21 6 11.8038 -8.2209 0.6045 22 6 11.5043 -6.8285 -0.0049 23 1 -0.4849 0.8401 0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8753 -0.6805 -0.8888 26 1 3.3695 -3.3126 0.0010 27 1 5.4645 -4.7563 -0.8878 28 1 5.4632 -4.7563 0.8921 29 1 7.6581 -3.7165 -0.7784 30 1 7.4734 -6.1378 -0.8859 31 1 7.4728 -6.1367 0.8941 32 1 8.8472 -8.2166 0.8945 33 1 8.8643 -8.2317 -0.8911 34 1 10.8820 -9.4097 -0.9858 35 1 10.4231 -9.9183 0.6725 36 1 12.7702 -8.5953 0.2672 37 1 11.7571 -8.1892 1.6931 38 1 11.8851 -6.7708 -1.0246 39 1 11.9436 -6.0417 0.6084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159372298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:51 Heat of formation + Delta-G solvation = -95.963561 kcal Electronic energy + Delta-G solvation = -19782.495643 eV Core-core repulsion = 16530.778849 eV Total energy + Delta-G solvation = -3251.716794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09337 -40.49216 -38.44523 -36.54390 -35.96360 -34.40077 -32.80189 -30.83572 -30.03839 -28.88145 -26.02708 -24.13770 -23.54901 -22.00673 -21.53147 -20.37550 -19.23922 -18.35792 -17.83743 -17.51416 -17.10891 -16.89495 -16.42486 -16.08249 -15.72646 -15.07382 -14.93441 -14.74296 -14.44860 -14.29100 -14.21660 -14.01593 -13.82677 -13.24646 -13.13570 -13.05208 -12.92257 -12.67648 -12.17266 -12.12364 -11.94769 -11.65415 -11.57649 -11.06525 -10.92172 -10.73787 -9.92961 -9.68554 -9.44766 -8.40620 -6.46856 1.31510 1.34300 1.47340 1.57466 1.75391 1.83850 2.27504 2.42442 2.94830 3.24999 3.47500 3.70756 3.89958 3.92892 4.06867 4.26879 4.31749 4.35573 4.42268 4.49030 4.51907 4.69346 4.79565 4.87132 4.96333 5.01336 5.02834 5.13969 5.26103 5.28056 5.39699 5.53376 5.78080 6.09517 6.12884 6.49063 6.54303 6.88024 7.14207 7.16378 7.45753 8.73885 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.057440 B = 0.002694 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.351210 B =10389.622306 C =10812.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.704 5.704 11 C 0.494 3.506 12 O -0.591 6.591 13 C 0.058 3.942 14 N -0.688 5.688 15 C 0.054 3.946 16 C 0.517 3.483 17 O -0.581 6.581 18 N -0.624 5.624 19 C 0.088 3.912 20 C -0.125 4.125 21 C -0.126 4.126 22 C 0.094 3.906 23 H 0.272 0.728 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.411 0.589 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.347 0.653 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.857 -25.074 -0.768 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.107 3.893 10 N -0.355 5.355 11 C 0.281 3.719 12 O -0.471 6.471 13 C -0.073 4.073 14 N -0.322 5.322 15 C -0.077 4.077 16 C 0.306 3.694 17 O -0.460 6.460 18 N -0.359 5.359 19 C -0.034 4.034 20 C -0.163 4.163 21 C -0.164 4.164 22 C -0.029 4.029 23 H 0.082 0.918 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.247 0.753 27 H 0.114 0.886 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.529 -23.610 -0.092 31.287 hybrid contribution -0.401 0.807 -0.873 1.255 sum 20.129 -22.803 -0.965 30.431 Atomic orbital electron populations 1.69976 1.07531 1.28556 1.50774 1.25569 0.95538 1.02529 0.93706 0.85894 0.79168 0.79644 0.79397 1.19035 1.19721 1.18921 1.21287 0.89804 0.94676 1.52402 0.91823 1.19068 0.93438 0.81345 0.95420 1.45968 1.06685 1.09598 1.73282 1.21414 0.82029 0.92811 0.75670 1.90667 1.56445 1.48266 1.51763 1.21798 0.88097 0.91621 1.05796 1.59725 1.06282 1.13399 1.52748 1.21866 0.89646 0.90680 1.05501 1.20800 0.90712 0.82343 0.75500 1.90735 1.72766 1.31119 1.51426 1.48674 1.07807 1.06533 1.72840 1.22414 0.97794 0.79708 1.03464 1.22669 0.92977 0.97439 1.03182 1.22778 1.00402 0.92327 1.00895 1.22364 0.80223 0.99225 1.01053 0.91849 0.97392 0.97330 0.75266 0.88617 0.85091 0.83418 0.88904 0.85394 0.89689 0.89654 0.89514 0.87858 0.88046 0.90602 0.91414 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.93 45.09 27.47 68.60 1.88 46.98 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -12.89 6.54 99.48 0.65 -12.24 16 7 C -0.54 -30.14 9.83 25.60 0.25 -29.89 16 8 H 0.06 3.65 7.84 -2.92 -0.02 3.62 16 9 C 0.23 11.59 4.50 85.63 0.38 11.97 16 10 N -0.70 -27.90 5.55 -466.80 -2.59 -30.49 16 11 C 0.49 18.61 7.87 87.66 0.69 19.30 16 12 O -0.59 -28.56 16.20 -3.01 -0.05 -28.61 16 13 C 0.06 1.40 6.17 85.56 0.53 1.92 16 14 N -0.69 -18.98 5.75 -521.97 -3.00 -21.98 16 15 C 0.05 0.98 5.36 85.56 0.46 1.44 16 16 C 0.52 12.58 7.89 87.66 0.69 13.27 16 17 O -0.58 -20.95 16.46 -3.04 -0.05 -21.00 16 18 N -0.62 -10.44 3.33 -811.80 -2.70 -13.14 16 19 C 0.09 0.64 6.48 86.73 0.56 1.20 16 20 C -0.12 -0.48 6.95 31.78 0.22 -0.26 16 21 C -0.13 -0.90 7.08 31.98 0.23 -0.67 16 22 C 0.09 1.43 6.91 86.85 0.60 2.03 16 23 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 24 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 25 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 26 H 0.41 13.61 8.32 -92.71 -0.77 12.84 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.35 11.19 8.13 -89.70 -0.73 10.46 16 30 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.05 1.08 8.03 -2.39 -0.02 1.06 16 Total: -1.00 -82.57 328.94 -1.63 -84.20 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.50 Total: 17.11 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 5.08 Total: 22.31 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -7.99 Total: -120.99 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.62 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -82.57 -1.63 -84.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159372298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.764 kcal (2) G-P(sol) polarization free energy of solvation -82.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds