Wall clock time and date at job start Mon Mar 30 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.70576 * 2 1 4 4 C 1.53301 * 109.74429 * 239.39121 * 2 1 3 5 5 N 1.46829 * 109.39987 * 186.49882 * 4 2 1 6 6 C 1.46897 * 111.00048 * 189.75362 * 5 4 2 7 7 C 1.50697 * 109.47013 * 169.27058 * 6 5 4 8 8 O 1.21278 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00323 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47080 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00355 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99343 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00736 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99406 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47237 * 90.00359 * 15 13 11 17 17 H 1.48499 * 109.46717 * 209.99851 * 15 13 11 18 18 H 1.48498 * 109.47184 * 330.00216 * 15 13 11 19 19 C 1.46824 * 111.56219 * 65.38692 * 5 4 2 20 20 C 1.53297 * 109.40551 * 294.61080 * 19 5 4 21 21 C 1.51435 * 109.70796 * 120.58545 * 2 1 3 22 22 N 1.27953 * 121.11118 * 348.77920 * 21 2 1 23 23 O 1.41600 * 119.99934 * 180.02562 * 22 21 2 24 24 H 1.09001 * 109.47398 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.47605 * 60.00181 * 1 2 3 26 26 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.48319 * 306.48109 * 4 2 1 28 28 H 1.09001 * 109.48341 * 66.51871 * 4 2 1 29 29 H 1.08999 * 109.47030 * 289.26669 * 6 5 4 30 30 H 1.08997 * 109.47100 * 49.26460 * 6 5 4 31 31 H 0.97002 * 119.99521 * 359.97438 * 9 7 6 32 32 H 1.08999 * 109.46889 * 299.99742 * 10 9 7 33 33 H 1.08997 * 109.46987 * 59.99292 * 10 9 7 34 34 H 0.96999 * 120.00602 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.48227 * 174.63351 * 19 5 4 36 36 H 1.09000 * 109.48430 * 54.59735 * 19 5 4 37 37 H 1.09007 * 109.70789 * 294.11096 * 20 19 5 38 38 H 1.08994 * 109.71689 * 173.48142 * 20 19 5 39 39 H 0.96699 * 113.99888 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0478 -0.7347 -1.2418 5 7 3.5077 -0.8666 -1.1570 6 6 4.0667 -1.3547 -2.4248 7 6 5.5681 -1.2285 -2.3933 8 8 6.1182 -0.7762 -1.4117 9 7 6.2995 -1.6175 -3.4565 10 6 7.7590 -1.4944 -3.4262 11 6 8.3324 -1.9952 -4.7268 12 1 7.6755 -2.3683 -5.4985 13 6 9.6958 -1.9771 -4.9313 14 7 10.4959 -1.5232 -3.9913 15 14 10.4067 -2.5985 -6.5431 16 1 10.4970 -1.4752 -7.5101 17 1 11.7622 -3.1559 -6.3039 18 1 9.5261 -3.6585 -7.0965 19 6 3.9074 -1.7299 -0.0387 20 6 3.5158 -1.0629 1.2849 21 6 2.0406 -0.7254 1.2273 22 7 1.2520 -1.0430 2.1835 23 8 1.7549 -1.7206 3.3206 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.5956 -1.7251 -1.2933 28 1 1.7853 -0.1682 -2.1353 29 1 3.7929 -2.4005 -2.5639 30 1 3.6694 -0.7623 -3.2490 31 1 5.8594 -1.9790 -4.2417 32 1 8.0325 -0.4485 -3.2869 33 1 8.1565 -2.0868 -2.6021 34 1 11.4550 -1.5101 -4.1354 35 1 4.9866 -1.8814 -0.0640 36 1 3.4029 -2.6924 -0.1240 37 1 4.0965 -0.1507 1.4227 38 1 3.7042 -1.7477 2.1116 39 1 1.0847 -1.9176 3.9894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169069729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:44 Heat of formation + Delta-G solvation = -31.147186 kcal Electronic energy + Delta-G solvation = -20510.043799 eV Core-core repulsion = 17261.137654 eV Total energy + Delta-G solvation = -3248.906145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79562 -38.43655 -36.61766 -34.56407 -34.02430 -32.51793 -32.30028 -30.13649 -28.03893 -26.78707 -25.24276 -22.74174 -22.64365 -21.50920 -19.63511 -19.14792 -17.12397 -17.03445 -16.26849 -15.82165 -15.34614 -15.17167 -14.80894 -14.58495 -14.36801 -14.28051 -13.89839 -13.71296 -13.15205 -12.69596 -12.57007 -12.20920 -11.97884 -11.96959 -11.74952 -11.65162 -11.27300 -11.16939 -11.00220 -10.91492 -10.85053 -10.32066 -9.75610 -9.69012 -9.40156 -8.99527 -8.73558 -8.27929 -7.86097 -6.17200 -4.24213 1.90521 2.91331 3.23585 3.29685 3.31911 3.37218 3.57619 4.22587 4.30659 4.40373 4.71150 4.81815 4.96964 5.13494 5.18854 5.24763 5.28992 5.33226 5.42971 5.48552 5.52072 5.59965 5.64708 5.82086 5.92093 6.01205 6.11005 6.12942 6.65080 6.92582 7.04961 7.32016 7.44618 7.51953 7.60463 7.66937 7.96789 8.63134 8.78508 9.11830 9.42657 10.92949 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.003247 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.033623 B = 8621.036068 C = 9039.537630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 H 0.108 0.892 4 C 0.064 3.936 5 N -0.523 5.523 6 C 0.037 3.963 7 C 0.498 3.502 8 O -0.538 6.538 9 N -0.715 5.715 10 C 0.251 3.749 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.060 3.940 20 C -0.110 4.110 21 C 0.144 3.856 22 N -0.343 5.343 23 O -0.419 6.419 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.389 0.611 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.184 0.436 6.401 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 H 0.126 0.874 4 C -0.065 4.065 5 N -0.247 5.247 6 C -0.094 4.094 7 C 0.282 3.718 8 O -0.416 6.416 9 N -0.364 5.364 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.069 4.069 20 C -0.149 4.149 21 C -0.049 4.049 22 N -0.086 5.086 23 O -0.324 6.324 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.222 0.778 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.714 1.299 7.293 21.060 hybrid contribution 0.352 -1.549 -1.015 1.885 sum -19.362 -0.250 6.278 20.356 Atomic orbital electron populations 1.21693 0.93235 1.02526 1.02302 1.20366 0.96122 0.99582 0.88930 0.87426 1.22216 0.87457 0.99304 0.97535 1.61354 1.08922 1.51460 1.02958 1.21991 0.94493 1.00005 0.92948 1.20285 0.88469 0.79102 0.83980 1.90635 1.72929 1.45148 1.32892 1.46460 1.10346 1.62827 1.16755 1.19082 0.72895 0.97591 0.97377 1.21228 0.92319 1.43872 1.00773 0.91925 1.24953 0.96848 0.95027 0.97193 1.69970 1.04136 1.45139 1.33016 0.86422 0.78473 0.79016 0.83033 1.20454 1.21019 1.19766 1.22223 1.03403 0.92349 0.88898 1.21308 0.92135 1.03072 0.98393 1.25439 0.94408 0.92233 0.92864 1.76015 1.26286 1.10571 0.95736 1.88461 1.38056 1.76965 1.28892 0.91657 0.91943 0.92424 0.94390 0.89294 0.92335 0.88053 0.77818 0.95506 0.95632 0.92438 0.87585 0.95416 0.88462 0.89658 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.57 37.15 0.32 -0.81 16 2 C -0.03 -0.30 3.17 -91.26 -0.29 -0.59 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.06 0.64 4.81 -3.71 -0.02 0.62 16 5 N -0.52 -7.02 4.31 -235.82 -1.02 -8.03 16 6 C 0.04 0.49 5.45 -4.98 -0.03 0.47 16 7 C 0.50 9.50 7.46 -10.98 -0.08 9.42 16 8 O -0.54 -12.43 14.39 5.56 0.08 -12.35 16 9 N -0.71 -14.53 5.55 -61.47 -0.34 -14.87 16 10 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 11 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 12 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.06 0.85 5.13 -3.71 -0.02 0.83 16 20 C -0.11 -1.47 6.11 -27.37 -0.17 -1.64 16 21 C 0.14 1.76 6.47 -78.21 -0.51 1.25 16 22 N -0.34 -4.25 10.99 35.94 0.39 -3.85 16 23 O -0.42 -4.86 13.59 -11.47 -0.16 -5.02 16 24 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 29 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.10 1.12 7.92 -51.93 -0.41 0.71 16 31 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.11 1.82 5.79 -51.93 -0.30 1.52 16 36 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.10 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.08 1.17 6.98 -51.93 -0.36 0.81 16 39 H 0.40 2.66 9.28 45.56 0.42 3.08 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -33.25 323.60 -6.83 -40.08 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.15 Total: 5.88 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.23 Total: 2.85 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.23 Total: -51.97 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.08 Total: -17.37 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.25 -6.83 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169069729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.933 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds