Wall clock time and date at job start Mon Mar 30 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.70576 * 2 1 4 4 C 1.53301 * 109.74429 * 239.39121 * 2 1 3 5 5 N 1.46829 * 109.39987 * 186.49882 * 4 2 1 6 6 C 1.46897 * 111.00048 * 189.75362 * 5 4 2 7 7 C 1.50697 * 109.47013 * 169.27058 * 6 5 4 8 8 O 1.21278 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00323 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47080 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00355 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99343 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00736 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99406 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47237 * 90.00359 * 15 13 11 17 17 H 1.48499 * 109.46717 * 209.99851 * 15 13 11 18 18 H 1.48498 * 109.47184 * 330.00216 * 15 13 11 19 19 C 1.46824 * 111.56219 * 65.38692 * 5 4 2 20 20 C 1.53297 * 109.40551 * 294.61080 * 19 5 4 21 21 C 1.51435 * 109.70796 * 120.58545 * 2 1 3 22 22 N 1.27953 * 121.11118 * 348.77920 * 21 2 1 23 23 O 1.41600 * 119.99934 * 180.02562 * 22 21 2 24 24 H 1.09001 * 109.47398 * 300.00141 * 1 2 3 25 25 H 1.09005 * 109.47605 * 60.00181 * 1 2 3 26 26 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.48319 * 306.48109 * 4 2 1 28 28 H 1.09001 * 109.48341 * 66.51871 * 4 2 1 29 29 H 1.08999 * 109.47030 * 289.26669 * 6 5 4 30 30 H 1.08997 * 109.47100 * 49.26460 * 6 5 4 31 31 H 0.97002 * 119.99521 * 359.97438 * 9 7 6 32 32 H 1.08999 * 109.46889 * 299.99742 * 10 9 7 33 33 H 1.08997 * 109.46987 * 59.99292 * 10 9 7 34 34 H 0.96999 * 120.00602 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.48227 * 174.63351 * 19 5 4 36 36 H 1.09000 * 109.48430 * 54.59735 * 19 5 4 37 37 H 1.09007 * 109.70789 * 294.11096 * 20 19 5 38 38 H 1.08994 * 109.71689 * 173.48142 * 20 19 5 39 39 H 0.96699 * 113.99888 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0478 -0.7347 -1.2418 5 7 3.5077 -0.8666 -1.1570 6 6 4.0667 -1.3547 -2.4248 7 6 5.5681 -1.2285 -2.3933 8 8 6.1182 -0.7762 -1.4117 9 7 6.2995 -1.6175 -3.4565 10 6 7.7590 -1.4944 -3.4262 11 6 8.3324 -1.9952 -4.7268 12 1 7.6755 -2.3683 -5.4985 13 6 9.6958 -1.9771 -4.9313 14 7 10.4959 -1.5232 -3.9913 15 14 10.4067 -2.5985 -6.5431 16 1 10.4970 -1.4752 -7.5101 17 1 11.7622 -3.1559 -6.3039 18 1 9.5261 -3.6585 -7.0965 19 6 3.9074 -1.7299 -0.0387 20 6 3.5158 -1.0629 1.2849 21 6 2.0406 -0.7254 1.2273 22 7 1.2520 -1.0430 2.1835 23 8 1.7549 -1.7206 3.3206 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.5956 -1.7251 -1.2933 28 1 1.7853 -0.1682 -2.1353 29 1 3.7929 -2.4005 -2.5639 30 1 3.6694 -0.7623 -3.2490 31 1 5.8594 -1.9790 -4.2417 32 1 8.0325 -0.4485 -3.2869 33 1 8.1565 -2.0868 -2.6021 34 1 11.4550 -1.5101 -4.1354 35 1 4.9866 -1.8814 -0.0640 36 1 3.4029 -2.6924 -0.1240 37 1 4.0965 -0.1507 1.4227 38 1 3.7042 -1.7477 2.1116 39 1 1.0847 -1.9176 3.9894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169069729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:44 Heat of formation + Delta-G solvation = -58.667625 kcal Electronic energy + Delta-G solvation = -20511.237175 eV Core-core repulsion = 17261.137654 eV Total energy + Delta-G solvation = -3250.099521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98900 -39.75879 -37.61387 -36.11117 -35.32427 -34.32010 -33.38033 -31.27259 -29.60904 -28.01294 -26.42504 -24.47682 -23.58557 -22.69789 -21.25256 -20.03700 -18.87247 -17.99690 -17.52820 -17.30948 -16.83950 -16.56125 -16.13148 -15.81888 -15.46208 -15.27955 -15.13571 -15.04364 -14.30769 -14.14417 -13.94956 -13.87329 -13.29441 -12.90993 -12.89282 -12.74088 -12.72050 -12.56218 -12.36182 -12.20913 -12.03111 -11.78616 -11.46338 -10.86125 -10.77900 -10.64000 -10.43726 -9.75783 -9.29139 -8.27507 -6.43928 0.96442 1.44250 1.46549 1.57638 1.85653 2.08426 2.28729 2.46989 3.01281 3.07509 3.41565 3.84686 3.91202 3.99538 4.15261 4.18102 4.32035 4.42006 4.45427 4.51033 4.69938 4.77325 4.81114 4.95217 4.98634 5.14730 5.16790 5.20647 5.27912 5.39363 5.52169 5.72705 5.81792 5.88061 5.98057 6.11125 6.68106 6.80147 7.00355 7.26032 7.59079 8.84628 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.003247 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.033623 B = 8621.036068 C = 9039.537630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.029 4.029 3 H 0.110 0.890 4 C 0.066 3.934 5 N -0.540 5.540 6 C 0.051 3.949 7 C 0.492 3.508 8 O -0.585 6.585 9 N -0.710 5.710 10 C 0.268 3.732 11 C -0.554 4.554 12 H 0.085 0.915 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.254 1.254 19 C 0.067 3.933 20 C -0.106 4.106 21 C 0.138 3.862 22 N -0.346 5.346 23 O -0.432 6.432 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.408 0.592 32 H -0.014 1.014 33 H -0.016 1.016 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.762 -0.093 4.152 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.128 0.872 4 C -0.062 4.062 5 N -0.265 5.265 6 C -0.079 4.079 7 C 0.279 3.721 8 O -0.465 6.465 9 N -0.361 5.361 10 C 0.145 3.855 11 C -0.592 4.592 12 H 0.103 0.897 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.178 1.178 19 C -0.062 4.062 20 C -0.146 4.146 21 C -0.055 4.055 22 N -0.088 5.088 23 O -0.341 6.341 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.244 0.756 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -22.372 0.757 5.040 22.945 hybrid contribution 1.130 -1.364 -0.178 1.780 sum -21.242 -0.607 4.861 21.799 Atomic orbital electron populations 1.21636 0.91461 1.02581 1.03225 1.20483 0.97443 0.99249 0.87690 0.87232 1.22348 0.84775 1.00377 0.98671 1.61287 1.11416 1.51365 1.02444 1.21946 0.89315 1.02478 0.94179 1.21419 0.91089 0.77174 0.82416 1.90624 1.74533 1.46854 1.34527 1.46180 1.08079 1.63522 1.18321 1.18479 0.76516 0.94230 0.96233 1.21642 0.93001 1.43475 1.01099 0.89697 1.26072 0.97410 0.94978 1.01255 1.70139 1.04556 1.46662 1.35733 0.85168 0.77457 0.78832 0.77826 1.19593 1.21172 1.17816 1.22008 1.01130 0.93176 0.89898 1.21182 0.93461 1.02100 0.97818 1.25726 0.93334 0.92616 0.93871 1.75980 1.26381 1.10599 0.95858 1.88445 1.39530 1.76863 1.29293 0.92230 0.89550 0.92745 0.93364 0.86355 0.89604 0.84350 0.75588 0.99627 0.99770 0.92329 0.91356 0.94538 0.89959 0.90645 0.73342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.57 71.98 0.62 -1.09 16 2 C -0.03 -0.50 3.17 -11.21 -0.04 -0.53 16 3 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.07 1.09 4.81 86.42 0.42 1.51 16 5 N -0.54 -13.51 4.31 -899.99 -3.88 -17.39 16 6 C 0.05 1.24 5.45 85.56 0.47 1.71 16 7 C 0.49 18.80 7.46 87.66 0.65 19.45 16 8 O -0.58 -28.27 14.39 -3.02 -0.04 -28.32 16 9 N -0.71 -28.88 5.55 -466.79 -2.59 -31.47 16 10 C 0.27 14.60 5.43 85.63 0.46 15.07 16 11 C -0.55 -29.82 9.28 25.60 0.24 -29.58 16 12 H 0.09 4.09 7.60 -2.91 -0.02 4.06 16 13 C 0.00 0.13 5.46 84.66 0.46 0.59 16 14 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 15 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 19 C 0.07 1.91 5.13 86.42 0.44 2.35 16 20 C -0.11 -2.91 6.11 30.18 0.18 -2.73 16 21 C 0.14 3.23 6.47 47.01 0.30 3.53 16 22 N -0.35 -8.17 10.99 -40.10 -0.44 -8.61 16 23 O -0.43 -9.78 13.59 -38.78 -0.53 -10.31 16 24 H 0.06 0.86 8.00 -2.39 -0.02 0.84 16 25 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 28 H 0.12 1.32 7.93 -2.39 -0.02 1.30 16 29 H 0.09 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.14 2.40 7.92 -2.39 -0.02 2.38 16 31 H 0.41 13.33 8.32 -92.71 -0.77 12.56 16 32 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.07 2.48 5.79 -2.39 -0.01 2.46 16 36 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.08 2.46 8.14 -2.38 -0.02 2.45 16 38 H 0.07 2.17 6.98 -2.39 -0.02 2.15 16 39 H 0.42 5.19 9.28 -74.06 -0.69 4.50 16 Total: -1.00 -75.93 323.60 -1.35 -77.28 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.39 Total: 20.57 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.21 Total: 10.27 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -6.62 Total: -113.52 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.57 Total: -38.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -75.93 -1.35 -77.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169069729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.613 kcal (2) G-P(sol) polarization free energy of solvation -75.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds