Wall clock time and date at job start Mon Mar 30 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.74044 * 2 1 4 4 C 1.53300 * 109.71299 * 120.60851 * 2 1 3 5 5 N 1.46826 * 109.39820 * 173.48002 * 4 2 1 6 6 C 1.46904 * 110.99632 * 170.24914 * 5 4 2 7 7 C 1.50695 * 109.47315 * 64.92482 * 6 5 4 8 8 O 1.21289 * 119.99993 * 354.33793 * 7 6 5 9 9 N 1.34774 * 120.00258 * 174.33875 * 7 6 5 10 10 C 1.46503 * 120.00182 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47207 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00373 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00472 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47284 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47583 * 120.00079 * 15 13 11 18 18 H 1.48506 * 109.47306 * 240.00011 * 15 13 11 19 19 C 1.46824 * 111.56789 * 294.61312 * 5 4 2 20 20 C 1.53297 * 109.40113 * 65.38977 * 19 5 4 21 21 C 1.51431 * 109.70943 * 239.39733 * 2 1 3 22 22 N 1.27955 * 121.11380 * 11.30330 * 21 2 1 23 23 O 1.41598 * 120.00541 * 179.97438 * 22 21 2 24 24 H 1.08999 * 109.46776 * 299.38942 * 1 2 3 25 25 H 1.08996 * 109.47361 * 59.39242 * 1 2 3 26 26 H 1.09006 * 109.46765 * 179.39309 * 1 2 3 27 27 H 1.09000 * 109.48042 * 53.50067 * 4 2 1 28 28 H 1.08997 * 109.48075 * 293.46140 * 4 2 1 29 29 H 1.09003 * 109.47082 * 184.92444 * 6 5 4 30 30 H 1.09005 * 109.47058 * 304.92270 * 6 5 4 31 31 H 0.97004 * 120.00273 * 0.02562 * 9 7 6 32 32 H 1.09003 * 109.46981 * 300.00360 * 10 9 7 33 33 H 1.09001 * 109.46994 * 60.00180 * 10 9 7 34 34 H 0.97002 * 119.99649 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.48420 * 185.37096 * 19 5 4 36 36 H 1.09002 * 109.48252 * 305.41113 * 19 5 4 37 37 H 1.08994 * 109.70937 * 186.52113 * 20 19 5 38 38 H 1.08997 * 109.71015 * 65.88984 * 20 19 5 39 39 H 0.96701 * 114.00299 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0471 -0.7348 1.2421 5 7 3.5069 -0.8676 1.1577 6 6 4.0652 -1.3559 2.4257 7 6 3.5688 -2.7544 2.6877 8 8 2.7442 -3.2532 1.9513 9 7 4.0411 -3.4510 3.7404 10 6 3.5580 -4.8104 3.9955 11 6 4.2373 -5.3630 5.2219 12 1 4.9566 -4.7616 5.7581 13 6 3.9398 -6.6359 5.6602 14 7 3.0636 -7.3681 5.0076 15 14 4.7813 -7.3207 7.1808 16 1 5.7177 -6.3061 7.7277 17 1 3.7587 -7.6539 8.2048 18 1 5.5369 -8.5467 6.8187 19 6 3.9065 -1.7312 0.0396 20 6 3.5157 -1.0641 -1.2841 21 6 2.0407 -0.7257 -1.2270 22 7 1.2524 -1.0422 -2.1839 23 8 1.7552 -1.7203 -3.3208 24 1 -0.3633 0.5043 0.8954 25 1 -0.3634 0.5232 -0.8844 26 1 -0.3633 -1.0277 -0.0109 27 1 1.5943 -1.7250 1.2934 28 1 1.7845 -0.1680 2.1353 29 1 5.1535 -1.3621 2.3651 30 1 3.7503 -0.7004 3.2377 31 1 4.7003 -3.0520 4.3297 32 1 2.4801 -4.7888 4.1561 33 1 3.7849 -5.4435 3.1377 34 1 2.8540 -8.2635 5.3162 35 1 4.9856 -1.8834 0.0654 36 1 3.4014 -2.6934 0.1248 37 1 3.7040 -1.7491 -2.1107 38 1 4.0968 -0.1523 -1.4219 39 1 1.0854 -1.9163 -3.9901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169069819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:47 Heat of formation + Delta-G solvation = -32.139801 kcal Electronic energy + Delta-G solvation = -20905.078133 eV Core-core repulsion = 17656.128945 eV Total energy + Delta-G solvation = -3248.949188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.03418 -38.30045 -36.41017 -34.51391 -33.99757 -32.41896 -32.33926 -30.08443 -27.94604 -26.68292 -25.19580 -22.69272 -22.57428 -21.41696 -19.77834 -19.03850 -17.39148 -16.75965 -16.09518 -15.80241 -15.43682 -15.17717 -14.76437 -14.53842 -14.36704 -14.22351 -14.01961 -13.37373 -12.99364 -12.58555 -12.47803 -12.11703 -11.91900 -11.86643 -11.79000 -11.49904 -11.12722 -11.00357 -10.99357 -10.79567 -10.70815 -10.36913 -9.83554 -9.64082 -9.50718 -9.42421 -8.78109 -7.95513 -7.90648 -6.20931 -4.28273 2.05106 3.05675 3.20446 3.22845 3.27807 3.30691 3.90275 4.06220 4.34032 4.43803 4.85174 4.99946 5.11834 5.15377 5.27385 5.37243 5.38823 5.41613 5.52702 5.61892 5.68943 5.82752 5.82873 5.92943 6.13076 6.17100 6.25422 6.33719 6.75044 6.97906 7.06343 7.24847 7.37486 7.45533 7.61201 7.74195 7.92149 8.54621 8.71879 9.01561 9.38694 10.89213 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003688 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.024050 B = 7591.373169 C = 7753.372824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 H 0.100 0.900 4 C 0.046 3.954 5 N -0.517 5.517 6 C 0.033 3.967 7 C 0.464 3.536 8 O -0.555 6.555 9 N -0.709 5.709 10 C 0.248 3.752 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.045 3.955 20 C -0.109 4.109 21 C 0.147 3.853 22 N -0.341 5.341 23 O -0.420 6.420 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.391 0.609 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 15.883 -9.171 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.118 0.882 4 C -0.083 4.083 5 N -0.240 5.240 6 C -0.099 4.099 7 C 0.248 3.752 8 O -0.436 6.436 9 N -0.357 5.357 10 C 0.127 3.873 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.084 4.084 20 C -0.149 4.149 21 C -0.046 4.046 22 N -0.084 5.084 23 O -0.325 6.325 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.224 0.776 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.873 15.834 -9.832 18.658 hybrid contribution 0.825 -1.438 0.917 1.895 sum -0.048 14.395 -8.915 16.932 Atomic orbital electron populations 1.21686 0.93337 1.02902 1.01891 1.20350 0.96323 0.98812 0.89268 0.88179 1.22440 0.87819 1.01731 0.96314 1.62242 1.11006 1.48267 1.02477 1.22295 1.01443 0.92743 0.93380 1.21804 0.82795 0.88774 0.81840 1.90590 1.34150 1.71379 1.47489 1.46609 1.43162 1.18407 1.27530 1.19100 0.95372 0.76394 0.96391 1.21263 1.25364 1.00307 1.11285 0.91823 1.24964 0.95025 0.96622 0.97426 1.69989 1.32429 1.10341 1.39530 0.86358 0.79284 0.79009 0.82247 1.19589 1.20766 1.20779 1.22287 1.00890 0.96436 0.88788 1.21306 0.92723 1.02173 0.98703 1.25359 0.94047 0.92377 0.92831 1.76039 1.26098 1.10392 0.95822 1.88428 1.38093 1.77109 1.28892 0.92078 0.91917 0.92086 0.90414 0.90148 0.88082 0.87904 0.77620 0.95629 0.95658 0.92479 0.90630 0.90864 0.89721 0.89399 0.75485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.56 37.16 0.32 -1.21 16 2 C -0.03 -0.32 3.17 -91.26 -0.29 -0.61 16 3 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 4 C 0.05 0.61 4.35 -3.71 -0.02 0.59 16 5 N -0.52 -6.82 4.77 -235.81 -1.13 -7.95 16 6 C 0.03 0.43 5.82 -4.98 -0.03 0.40 16 7 C 0.46 8.56 7.24 -10.99 -0.08 8.48 16 8 O -0.56 -12.36 11.74 5.55 0.07 -12.29 16 9 N -0.71 -14.18 5.55 -61.47 -0.34 -14.53 16 10 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 11 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 12 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.04 0.64 4.96 -3.71 -0.02 0.62 16 20 C -0.11 -1.42 6.11 -27.36 -0.17 -1.59 16 21 C 0.15 2.01 6.47 -78.21 -0.51 1.50 16 22 N -0.34 -4.84 11.00 35.94 0.40 -4.44 16 23 O -0.42 -5.48 13.59 -11.47 -0.16 -5.63 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.33 5.80 -51.93 -0.30 1.03 16 28 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 29 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.10 1.11 8.04 -51.93 -0.42 0.70 16 31 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.07 1.33 5.80 -51.93 -0.30 1.03 16 37 H 0.08 1.16 6.98 -51.93 -0.36 0.80 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.40 3.27 9.28 45.56 0.42 3.69 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -32.99 318.83 -6.92 -39.90 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.04 Total: 8.36 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.23 Total: 1.39 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.33 Total: -52.16 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.09 Total: -17.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.99 -6.92 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169069819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.762 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds