Wall clock time and date at job start Mon Mar 30 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.74044 * 2 1 4 4 C 1.53300 * 109.71299 * 120.60851 * 2 1 3 5 5 N 1.46826 * 109.39820 * 173.48002 * 4 2 1 6 6 C 1.46904 * 110.99632 * 170.24914 * 5 4 2 7 7 C 1.50695 * 109.47315 * 64.92482 * 6 5 4 8 8 O 1.21289 * 119.99993 * 354.33793 * 7 6 5 9 9 N 1.34774 * 120.00258 * 174.33875 * 7 6 5 10 10 C 1.46503 * 120.00182 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47207 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00373 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00472 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47284 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47583 * 120.00079 * 15 13 11 18 18 H 1.48506 * 109.47306 * 240.00011 * 15 13 11 19 19 C 1.46824 * 111.56789 * 294.61312 * 5 4 2 20 20 C 1.53297 * 109.40113 * 65.38977 * 19 5 4 21 21 C 1.51431 * 109.70943 * 239.39733 * 2 1 3 22 22 N 1.27955 * 121.11380 * 11.30330 * 21 2 1 23 23 O 1.41598 * 120.00541 * 179.97438 * 22 21 2 24 24 H 1.08999 * 109.46776 * 299.38942 * 1 2 3 25 25 H 1.08996 * 109.47361 * 59.39242 * 1 2 3 26 26 H 1.09006 * 109.46765 * 179.39309 * 1 2 3 27 27 H 1.09000 * 109.48042 * 53.50067 * 4 2 1 28 28 H 1.08997 * 109.48075 * 293.46140 * 4 2 1 29 29 H 1.09003 * 109.47082 * 184.92444 * 6 5 4 30 30 H 1.09005 * 109.47058 * 304.92270 * 6 5 4 31 31 H 0.97004 * 120.00273 * 0.02562 * 9 7 6 32 32 H 1.09003 * 109.46981 * 300.00360 * 10 9 7 33 33 H 1.09001 * 109.46994 * 60.00180 * 10 9 7 34 34 H 0.97002 * 119.99649 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.48420 * 185.37096 * 19 5 4 36 36 H 1.09002 * 109.48252 * 305.41113 * 19 5 4 37 37 H 1.08994 * 109.70937 * 186.52113 * 20 19 5 38 38 H 1.08997 * 109.71015 * 65.88984 * 20 19 5 39 39 H 0.96701 * 114.00299 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0471 -0.7348 1.2421 5 7 3.5069 -0.8676 1.1577 6 6 4.0652 -1.3559 2.4257 7 6 3.5688 -2.7544 2.6877 8 8 2.7442 -3.2532 1.9513 9 7 4.0411 -3.4510 3.7404 10 6 3.5580 -4.8104 3.9955 11 6 4.2373 -5.3630 5.2219 12 1 4.9566 -4.7616 5.7581 13 6 3.9398 -6.6359 5.6602 14 7 3.0636 -7.3681 5.0076 15 14 4.7813 -7.3207 7.1808 16 1 5.7177 -6.3061 7.7277 17 1 3.7587 -7.6539 8.2048 18 1 5.5369 -8.5467 6.8187 19 6 3.9065 -1.7312 0.0396 20 6 3.5157 -1.0641 -1.2841 21 6 2.0407 -0.7257 -1.2270 22 7 1.2524 -1.0422 -2.1839 23 8 1.7552 -1.7203 -3.3208 24 1 -0.3633 0.5043 0.8954 25 1 -0.3634 0.5232 -0.8844 26 1 -0.3633 -1.0277 -0.0109 27 1 1.5943 -1.7250 1.2934 28 1 1.7845 -0.1680 2.1353 29 1 5.1535 -1.3621 2.3651 30 1 3.7503 -0.7004 3.2377 31 1 4.7003 -3.0520 4.3297 32 1 2.4801 -4.7888 4.1561 33 1 3.7849 -5.4435 3.1377 34 1 2.8540 -8.2635 5.3162 35 1 4.9856 -1.8834 0.0654 36 1 3.4014 -2.6934 0.1248 37 1 3.7040 -1.7491 -2.1107 38 1 4.0968 -0.1523 -1.4219 39 1 1.0854 -1.9163 -3.9901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169069819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:46 Heat of formation + Delta-G solvation = -59.990981 kcal Electronic energy + Delta-G solvation = -20906.285850 eV Core-core repulsion = 17656.128945 eV Total energy + Delta-G solvation = -3250.156906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33032 -39.57906 -37.53905 -36.15092 -35.27249 -34.37217 -33.36976 -31.27369 -29.60232 -27.97167 -26.46120 -24.51797 -23.58599 -22.67700 -21.35238 -20.10011 -18.98383 -18.05370 -17.43063 -17.31762 -16.83941 -16.57260 -16.13822 -15.98740 -15.52544 -15.47056 -15.18440 -14.84152 -14.20642 -14.12864 -13.98305 -13.66524 -13.23159 -13.08660 -12.87519 -12.79006 -12.75197 -12.53026 -12.23342 -12.11370 -11.90782 -11.78589 -11.46735 -11.32957 -10.82657 -10.67967 -10.55413 -9.79817 -9.21187 -8.31005 -6.47963 1.01559 1.42377 1.43194 1.56876 1.75423 2.11827 2.32102 2.64199 2.81660 3.04140 3.43704 3.85168 3.99859 4.02952 4.09833 4.30596 4.38789 4.42721 4.46937 4.65043 4.73260 4.78746 4.88919 4.95270 5.03850 5.09366 5.16466 5.21771 5.23923 5.34424 5.49755 5.69515 5.78833 5.84434 5.92922 5.98917 6.64660 6.82138 6.91999 7.22479 7.52165 8.81171 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003688 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.024050 B = 7591.373169 C = 7753.372824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 H 0.130 0.870 4 C 0.046 3.954 5 N -0.500 5.500 6 C 0.044 3.956 7 C 0.459 3.541 8 O -0.597 6.597 9 N -0.706 5.706 10 C 0.267 3.733 11 C -0.554 4.554 12 H 0.086 0.914 13 C 0.002 3.998 14 N -0.934 5.934 15 Si 0.985 3.015 16 H -0.250 1.250 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.048 3.952 20 C -0.103 4.103 21 C 0.134 3.866 22 N -0.357 5.357 23 O -0.431 6.431 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.410 0.590 32 H -0.017 1.017 33 H -0.019 1.019 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 18.468 -7.824 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.148 0.852 4 C -0.082 4.082 5 N -0.222 5.222 6 C -0.087 4.087 7 C 0.246 3.754 8 O -0.480 6.480 9 N -0.356 5.356 10 C 0.144 3.856 11 C -0.592 4.592 12 H 0.104 0.896 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.808 3.192 16 H -0.174 1.174 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.081 4.081 20 C -0.142 4.142 21 C -0.059 4.059 22 N -0.100 5.100 23 O -0.340 6.340 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.245 0.755 32 H 0.001 0.999 33 H -0.001 1.001 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.943 18.473 -8.501 20.357 hybrid contribution 0.204 -2.246 0.390 2.289 sum 1.147 16.227 -8.111 18.177 Atomic orbital electron populations 1.21649 0.92967 1.01478 1.03234 1.20437 0.96623 0.99671 0.87465 0.85210 1.22440 0.87591 0.99940 0.98270 1.62357 1.10861 1.46777 1.02166 1.22532 1.03144 0.88734 0.94282 1.23026 0.81561 0.90637 0.80195 1.90614 1.35912 1.72824 1.48603 1.46349 1.43992 1.16386 1.28907 1.18468 0.93120 0.79167 0.94882 1.21680 1.25451 1.00789 1.11251 0.89605 1.26091 0.95540 0.97076 1.01025 1.70157 1.34378 1.10902 1.41808 0.85111 0.78223 0.78383 0.77506 1.17352 1.20512 1.20619 1.22199 1.01228 0.94611 0.90036 1.21259 0.92834 1.02751 0.97389 1.25807 0.94457 0.92317 0.93347 1.75995 1.26591 1.10989 0.96463 1.88395 1.39373 1.77056 1.29172 0.89938 0.91342 0.94846 0.94888 0.87740 0.84855 0.84356 0.75450 0.99872 1.00091 0.92343 0.89093 0.95565 0.91032 0.86877 0.73510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.56 71.98 0.62 -2.19 16 2 C -0.02 -0.48 3.17 -11.21 -0.04 -0.52 16 3 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 4 C 0.05 1.17 4.35 86.42 0.38 1.55 16 5 N -0.50 -12.01 4.77 -899.96 -4.29 -16.30 16 6 C 0.04 1.02 5.82 85.55 0.50 1.51 16 7 C 0.46 16.90 7.24 87.66 0.63 17.54 16 8 O -0.60 -27.93 11.74 -3.06 -0.04 -27.96 16 9 N -0.71 -28.28 5.55 -466.78 -2.59 -30.87 16 10 C 0.27 14.51 5.43 85.63 0.46 14.98 16 11 C -0.55 -29.79 9.28 25.60 0.24 -29.55 16 12 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 15 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 16 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 C 0.05 1.34 4.96 86.42 0.43 1.77 16 20 C -0.10 -2.57 6.11 30.18 0.18 -2.38 16 21 C 0.13 3.56 6.47 47.01 0.30 3.86 16 22 N -0.36 -10.15 11.00 -40.10 -0.44 -10.60 16 23 O -0.43 -11.32 13.59 -38.78 -0.53 -11.85 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.33 8.02 -2.39 -0.02 1.32 16 26 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.03 1.16 5.80 -2.39 -0.01 1.15 16 28 H 0.10 2.12 8.01 -2.39 -0.02 2.10 16 29 H 0.13 2.32 8.13 -2.39 -0.02 2.30 16 30 H 0.14 2.33 8.04 -2.38 -0.02 2.31 16 31 H 0.41 13.15 8.32 -92.71 -0.77 12.38 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 36 H 0.03 1.00 5.80 -2.39 -0.01 0.98 16 37 H 0.07 1.97 6.98 -2.39 -0.02 1.95 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.41 6.87 9.28 -74.06 -0.69 6.19 16 Total: -1.00 -76.55 318.83 -1.79 -78.34 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.39 Total: 24.37 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 4.17 Total: 7.14 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -7.04 Total: -114.08 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.56 Total: -39.81 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.55 -1.79 -78.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169069819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.353 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds