Wall clock time and date at job start Mon Mar 30 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99579 * 2 1 4 4 O 1.20824 * 120.00177 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46980 * 299.99944 * 5 3 2 7 7 C 1.53006 * 109.47126 * 59.99713 * 5 3 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.52997 * 109.47084 * 179.97438 * 5 3 2 12 12 H 1.09001 * 109.47375 * 299.99958 * 11 5 3 13 13 C 1.52996 * 109.46975 * 60.00328 * 11 5 3 14 14 N 1.46506 * 109.47089 * 185.00010 * 13 11 5 15 15 C 1.34777 * 119.99938 * 179.97438 * 14 13 11 16 16 O 1.21688 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.46378 * 120.00038 * 180.02562 * 15 14 13 18 18 H 1.08005 * 119.99702 * 359.97438 * 17 15 14 19 19 C 1.40039 * 119.99931 * 179.97438 * 17 15 14 20 20 N 1.30672 * 120.00526 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99767 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47341 * 90.00099 * 21 19 17 23 23 H 1.48505 * 109.46833 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47087 * 329.99611 * 21 19 17 25 25 H 1.09000 * 109.47246 * 60.00167 * 1 2 3 26 26 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47120 * 299.99507 * 1 2 3 28 28 H 1.08998 * 109.46505 * 59.99690 * 7 5 3 29 29 H 1.08996 * 109.46884 * 300.00571 * 7 5 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 35 35 H 1.09004 * 109.47108 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47140 * 304.99643 * 13 11 5 37 37 H 1.09000 * 109.47805 * 64.99517 * 13 11 5 38 38 H 0.96995 * 119.99578 * 359.97438 * 14 13 11 39 39 H 0.96993 * 120.00383 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9556 0.7810 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6417 0.6617 -1.2480 9 6 6.0750 2.1291 -1.2485 10 6 5.5275 2.8229 0.0004 11 6 4.0001 2.7421 -0.0002 12 1 3.6107 3.2357 -0.8907 13 6 3.4525 3.4364 1.2484 14 7 3.7657 4.8664 1.1890 15 6 3.3780 5.6832 2.1884 16 8 2.7675 5.2331 3.1400 17 6 3.6904 7.1121 2.1288 18 1 4.2319 7.5116 1.2840 19 6 3.2871 7.9609 3.1670 20 7 2.6315 7.4776 4.1889 21 14 3.6864 9.7842 3.0912 22 1 2.5826 10.5046 2.4074 23 1 3.8442 10.3140 4.4695 24 1 4.9498 9.9832 2.3368 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7244 1.0749 -2.1385 29 1 3.8047 -0.4642 -1.2482 30 1 6.0318 0.1677 -2.1380 31 1 6.0314 0.1680 -0.3578 32 1 7.1635 2.1865 -1.2487 33 1 5.6853 2.6227 -2.1387 34 1 5.9171 2.3293 0.8906 35 1 5.8365 3.8682 0.0003 36 1 2.3717 3.3028 1.2940 37 1 3.9102 3.0009 2.1366 38 1 4.2520 5.2252 0.4303 39 1 2.3525 8.0654 4.9082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170533852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:22 Heat of formation + Delta-G solvation = -148.610196 kcal Electronic energy + Delta-G solvation = -21214.506041 eV Core-core repulsion = 17928.213567 eV Total energy + Delta-G solvation = -3286.292474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79732 -38.55778 -36.88112 -36.32456 -33.54457 -32.27643 -31.52817 -30.36712 -27.80429 -26.62632 -24.75453 -23.63316 -21.45893 -20.78705 -19.78535 -19.38371 -17.48804 -17.19815 -16.58265 -16.26277 -15.26083 -14.84576 -14.62534 -14.34546 -13.99697 -13.94566 -13.78615 -13.23935 -12.73720 -12.56317 -12.41466 -12.23319 -11.99997 -11.76915 -11.37301 -11.34783 -11.06635 -11.00716 -10.82509 -10.75135 -10.60821 -10.40166 -10.34795 -10.23019 -10.03714 -9.71288 -8.76721 -7.49697 -7.29858 -6.09455 -4.54416 2.31752 2.74303 3.19261 3.25413 3.28978 4.16847 4.46953 4.56234 4.63715 4.69515 4.96396 5.07994 5.08436 5.14427 5.17067 5.24832 5.34720 5.41947 5.48280 5.49968 5.54664 5.75776 5.87661 5.92151 5.97989 6.03343 6.05961 6.15499 6.31848 6.37472 6.41374 6.72872 6.92611 7.51405 7.86790 8.05497 8.24404 8.43616 9.11276 9.67638 10.70599 10.90745 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004799 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.255588 B = 5832.592903 C = 6821.492626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.457 3.543 4 O -0.484 6.484 5 C -0.070 4.070 6 H 0.109 0.891 7 C -0.108 4.108 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.113 4.113 11 C -0.081 4.081 12 H 0.081 0.919 13 C 0.126 3.874 14 N -0.763 5.763 15 C 0.556 3.444 16 O -0.582 6.582 17 C -0.546 4.546 18 H 0.066 0.934 19 C 0.088 3.912 20 N -0.770 5.770 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.377 0.623 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -15.104 -12.017 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.299 3.701 4 O -0.370 6.370 5 C -0.089 4.089 6 H 0.127 0.873 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.150 4.150 11 C -0.100 4.100 12 H 0.099 0.901 13 C 0.001 3.999 14 N -0.418 5.418 15 C 0.359 3.641 16 O -0.465 6.465 17 C -0.583 4.583 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.399 5.399 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.190 1.190 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.209 0.791 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.970 -15.110 -11.114 18.991 hybrid contribution 0.114 1.118 -0.343 1.175 sum 3.085 -13.992 -11.457 18.345 Atomic orbital electron populations 1.23236 0.76677 1.03298 1.02744 1.86483 1.23191 1.33879 1.84494 1.23886 0.92158 0.81302 0.72797 1.90724 1.66979 1.35820 1.43445 1.21099 0.86705 0.99204 1.01910 0.87273 1.21515 0.96355 1.00641 0.96068 1.21535 0.94571 0.97176 1.02142 1.21601 1.00431 0.95310 0.98661 1.21586 0.93891 1.01696 0.97855 1.21281 0.95885 0.92105 1.00765 0.90097 1.21207 1.00784 0.83780 0.94123 1.46037 1.63903 1.06199 1.25696 1.18187 0.78742 0.86560 0.80604 1.90589 1.44451 1.77246 1.34225 1.20888 1.39064 0.91401 1.06984 0.91547 1.25698 0.93132 0.99918 0.94411 1.70030 1.27811 1.35659 1.06407 0.86400 0.79449 0.83090 0.77933 1.19811 1.20527 1.18959 0.92047 0.88388 0.91732 0.91434 0.90678 0.91664 0.91568 0.91821 0.91894 0.91596 0.90654 0.91075 0.94157 0.79125 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.66 10.47 -39.25 -0.41 -5.07 16 3 C 0.46 6.82 6.94 36.01 0.25 7.07 16 4 O -0.48 -9.14 13.42 -18.75 -0.25 -9.39 16 5 C -0.07 -0.88 2.16 -91.77 -0.20 -1.07 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.11 -1.04 5.14 -26.73 -0.14 -1.17 16 8 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 9 C -0.12 -1.19 5.92 -26.73 -0.16 -1.34 16 10 C -0.11 -1.42 5.07 -26.76 -0.14 -1.56 16 11 C -0.08 -1.21 1.39 -90.65 -0.13 -1.34 16 12 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 13 C 0.13 2.62 4.80 -4.04 -0.02 2.60 16 14 N -0.76 -18.09 5.28 -61.72 -0.33 -18.42 16 15 C 0.56 16.67 7.75 -12.99 -0.10 16.56 16 16 O -0.58 -19.90 15.02 5.20 0.08 -19.82 16 17 C -0.55 -16.06 9.54 -35.63 -0.34 -16.40 16 18 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 19 C 0.09 2.54 5.50 -17.37 -0.10 2.44 16 20 N -0.77 -23.97 11.83 55.55 0.66 -23.32 16 21 Si 0.91 20.77 29.56 -169.99 -5.02 15.75 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.02 7.18 -51.93 -0.37 0.65 16 36 H 0.07 1.70 5.42 -51.93 -0.28 1.41 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.38 7.83 7.63 -40.82 -0.31 7.52 16 39 H 0.27 7.52 8.29 -40.82 -0.34 7.18 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -37.40 319.71 -6.62 -44.01 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.00 Total: 5.37 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.15 Total: 6.07 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.33 Total: -41.73 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.58 Total: -34.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -37.40 -6.62 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170533852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.598 kcal (2) G-P(sol) polarization free energy of solvation -37.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds