Wall clock time and date at job start Mon Mar 30 2020 05:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99579 * 2 1 4 4 O 1.20824 * 120.00177 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46980 * 299.99944 * 5 3 2 7 7 C 1.53006 * 109.47126 * 59.99713 * 5 3 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47060 * 300.00449 * 8 7 5 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.52997 * 109.47084 * 179.97438 * 5 3 2 12 12 H 1.09001 * 109.47375 * 299.99958 * 11 5 3 13 13 C 1.52996 * 109.46975 * 60.00328 * 11 5 3 14 14 N 1.46506 * 109.47089 * 185.00010 * 13 11 5 15 15 C 1.34777 * 119.99938 * 179.97438 * 14 13 11 16 16 O 1.21688 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.46378 * 120.00038 * 180.02562 * 15 14 13 18 18 H 1.08005 * 119.99702 * 359.97438 * 17 15 14 19 19 C 1.40039 * 119.99931 * 179.97438 * 17 15 14 20 20 N 1.30672 * 120.00526 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99767 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47341 * 90.00099 * 21 19 17 23 23 H 1.48505 * 109.46833 * 210.00029 * 21 19 17 24 24 H 1.48497 * 109.47087 * 329.99611 * 21 19 17 25 25 H 1.09000 * 109.47246 * 60.00167 * 1 2 3 26 26 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47120 * 299.99507 * 1 2 3 28 28 H 1.08998 * 109.46505 * 59.99690 * 7 5 3 29 29 H 1.08996 * 109.46884 * 300.00571 * 7 5 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46832 * 60.00321 * 8 7 5 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 35 35 H 1.09004 * 109.47108 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47140 * 304.99643 * 13 11 5 37 37 H 1.09000 * 109.47805 * 64.99517 * 13 11 5 38 38 H 0.96995 * 119.99578 * 359.97438 * 14 13 11 39 39 H 0.96993 * 120.00383 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9556 0.7810 0.8908 7 6 4.1139 0.5810 -1.2483 8 6 5.6417 0.6617 -1.2480 9 6 6.0750 2.1291 -1.2485 10 6 5.5275 2.8229 0.0004 11 6 4.0001 2.7421 -0.0002 12 1 3.6107 3.2357 -0.8907 13 6 3.4525 3.4364 1.2484 14 7 3.7657 4.8664 1.1890 15 6 3.3780 5.6832 2.1884 16 8 2.7675 5.2331 3.1400 17 6 3.6904 7.1121 2.1288 18 1 4.2319 7.5116 1.2840 19 6 3.2871 7.9609 3.1670 20 7 2.6315 7.4776 4.1889 21 14 3.6864 9.7842 3.0912 22 1 2.5826 10.5046 2.4074 23 1 3.8442 10.3140 4.4695 24 1 4.9498 9.9832 2.3368 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.7244 1.0749 -2.1385 29 1 3.8047 -0.4642 -1.2482 30 1 6.0318 0.1677 -2.1380 31 1 6.0314 0.1680 -0.3578 32 1 7.1635 2.1865 -1.2487 33 1 5.6853 2.6227 -2.1387 34 1 5.9171 2.3293 0.8906 35 1 5.8365 3.8682 0.0003 36 1 2.3717 3.3028 1.2940 37 1 3.9102 3.0009 2.1366 38 1 4.2520 5.2252 0.4303 39 1 2.3525 8.0654 4.9082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170533852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:22 Heat of formation + Delta-G solvation = -175.480243 kcal Electronic energy + Delta-G solvation = -21215.671214 eV Core-core repulsion = 17928.213567 eV Total energy + Delta-G solvation = -3287.457647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96969 -39.85334 -38.84287 -37.49729 -35.35650 -34.48299 -32.52792 -31.82220 -28.90223 -28.49813 -26.34703 -24.61871 -22.80561 -21.77319 -21.55342 -20.73230 -19.24282 -18.59858 -17.79806 -17.45405 -17.36751 -16.36722 -15.99969 -15.78212 -15.42337 -14.99362 -14.85982 -14.69876 -14.33667 -14.13949 -13.62878 -13.48508 -13.24501 -13.03576 -12.91463 -12.81085 -12.64901 -12.56909 -12.28551 -12.02222 -11.96161 -11.79688 -11.77407 -11.38793 -11.08378 -10.96141 -10.87878 -9.88213 -9.41453 -8.29613 -6.86667 1.13909 1.38707 1.41371 1.56652 1.71768 2.24469 2.47010 3.07045 3.52834 3.61956 3.67378 3.71193 4.06032 4.22495 4.25570 4.28605 4.31001 4.35460 4.37787 4.46818 4.52797 4.66812 4.71279 4.92172 4.99425 5.04840 5.16082 5.25596 5.27346 5.30503 5.32932 5.38462 5.47567 5.57909 5.87082 6.23975 6.28210 6.71671 6.85398 7.56372 8.49600 8.67567 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004799 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.255588 B = 5832.592903 C = 6821.492626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.456 3.544 4 O -0.533 6.533 5 C -0.068 4.068 6 H 0.121 0.879 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.110 4.110 11 C -0.067 4.067 12 H 0.075 0.925 13 C 0.128 3.872 14 N -0.749 5.749 15 C 0.535 3.465 16 O -0.637 6.637 17 C -0.574 4.574 18 H 0.089 0.911 19 C 0.026 3.974 20 N -0.825 5.825 21 Si 1.002 2.998 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.246 1.246 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.025 0.975 38 H 0.393 0.607 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -15.429 -14.006 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.300 3.700 4 O -0.423 6.423 5 C -0.087 4.087 6 H 0.139 0.861 7 C -0.138 4.138 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.086 4.086 12 H 0.093 0.907 13 C 0.004 3.996 14 N -0.403 5.403 15 C 0.339 3.661 16 O -0.525 6.525 17 C -0.611 4.611 18 H 0.107 0.893 19 C -0.189 4.189 20 N -0.455 5.455 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.169 1.169 25 H 0.080 0.920 26 H 0.157 0.843 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.227 0.773 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.850 -15.490 -13.168 20.901 hybrid contribution -0.535 1.126 0.286 1.279 sum 4.315 -14.364 -12.882 19.771 Atomic orbital electron populations 1.23517 0.75350 1.05718 1.02009 1.86477 1.24502 1.32561 1.83798 1.24427 0.93122 0.81130 0.71324 1.90713 1.68164 1.37465 1.45921 1.21195 0.85284 0.97820 1.04431 0.86105 1.21535 0.97264 1.01096 0.93874 1.21548 0.93313 0.96335 1.03763 1.21576 1.01276 0.95890 0.96670 1.21570 0.91790 1.01512 0.99898 1.21139 0.97461 0.93084 0.96927 0.90668 1.21261 0.99057 0.82474 0.96840 1.45720 1.62714 1.07179 1.24707 1.18694 0.78530 0.87904 0.81011 1.90536 1.46987 1.78352 1.36637 1.21444 1.39712 0.91609 1.08304 0.89327 1.27049 0.92060 1.06492 0.93250 1.70211 1.29057 1.38568 1.07647 0.84967 0.80029 0.74357 0.78563 1.18719 1.19627 1.16899 0.92001 0.84338 0.93368 0.91431 0.88860 0.89189 0.90791 0.90188 0.91591 0.91592 0.91988 0.94374 0.95670 0.77301 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.75 16 2 O -0.36 -8.90 10.47 -51.41 -0.54 -9.44 16 3 C 0.46 13.78 6.94 71.24 0.49 14.28 16 4 O -0.53 -21.19 13.42 21.97 0.29 -20.89 16 5 C -0.07 -1.65 2.16 -11.54 -0.02 -1.68 16 6 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 7 C -0.10 -1.64 5.14 30.60 0.16 -1.48 16 8 C -0.11 -1.47 5.92 30.59 0.18 -1.29 16 9 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 10 C -0.11 -2.65 5.07 30.58 0.16 -2.50 16 11 C -0.07 -2.00 1.39 -10.81 -0.02 -2.02 16 12 H 0.07 2.34 8.10 -2.39 -0.02 2.32 16 13 C 0.13 5.61 4.80 86.38 0.41 6.02 16 14 N -0.75 -36.91 5.28 -467.40 -2.47 -39.38 16 15 C 0.53 33.43 7.75 86.36 0.67 34.10 16 16 O -0.64 -46.06 15.02 -4.31 -0.06 -46.12 16 17 C -0.57 -34.30 9.54 24.83 0.24 -34.06 16 18 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 19 C 0.03 1.52 5.50 85.30 0.47 1.99 16 20 N -0.83 -52.96 11.83 21.83 0.26 -52.70 16 21 Si 1.00 42.48 29.56 68.60 2.03 44.51 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 25 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 26 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.14 8.13 -2.39 -0.02 1.13 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.25 8.11 -2.39 -0.02 1.23 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.64 7.18 -2.38 -0.02 1.63 16 36 H 0.04 1.95 5.42 -2.39 -0.01 1.94 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.39 16.64 7.63 -92.71 -0.71 15.94 16 39 H 0.27 15.86 8.29 -92.71 -0.77 15.09 16 Total: -1.00 -86.55 319.71 3.96 -82.58 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.34 Total: 28.04 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.12 Total: 13.39 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -2.21 Total: -92.07 kcal Atomic # 8 Polarization: -76.15 SS G_CDS: -0.31 Total: -76.45 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -86.55 3.96 -82.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170533852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.897 kcal (2) G-P(sol) polarization free energy of solvation -86.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds