Wall clock time and date at job start Mon Mar 30 2020 04:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99908 * 2 1 4 4 N 1.34774 * 120.00416 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00419 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47343 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47038 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46974 * 179.97438 * 7 6 5 9 9 O 1.20827 * 119.99945 * 0.02562 * 8 7 6 10 10 O 1.34222 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00083 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47352 * 180.02562 * 11 10 8 13 13 C 1.50706 * 115.54986 * 65.10179 * 12 11 10 14 14 H 1.07994 * 120.00031 * 266.11359 * 13 12 11 15 15 C 1.37878 * 119.99497 * 86.11060 * 13 12 11 16 16 N 1.31521 * 120.00296 * 353.70275 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 173.70088 * 15 13 12 18 18 H 1.48499 * 109.46974 * 90.00184 * 17 15 13 19 19 H 1.48496 * 109.47200 * 210.00081 * 17 15 13 20 20 H 1.48497 * 109.46993 * 330.00604 * 17 15 13 21 21 C 1.53000 * 117.49708 * 279.44047 * 12 11 10 22 22 C 1.53001 * 117.50116 * 210.77601 * 12 11 10 23 23 H 1.09001 * 109.46766 * 269.99765 * 1 2 3 24 24 H 1.08998 * 109.47301 * 29.99940 * 1 2 3 25 25 H 1.09003 * 109.46991 * 150.00069 * 1 2 3 26 26 H 0.96998 * 119.99749 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.47106 * 59.99642 * 5 4 2 28 28 H 1.09001 * 109.46929 * 299.99786 * 5 4 2 29 29 H 1.09000 * 109.47324 * 59.99761 * 6 5 4 30 30 H 1.09001 * 109.46921 * 299.99775 * 6 5 4 31 31 H 1.08993 * 109.47445 * 60.00011 * 7 6 5 32 32 H 1.09001 * 109.47077 * 299.99675 * 7 6 5 33 33 H 1.09004 * 109.46987 * 299.99839 * 11 10 8 34 34 H 1.09004 * 109.47073 * 60.00079 * 11 10 8 35 35 H 0.96998 * 120.00160 * 179.97438 * 16 15 13 36 36 H 1.08999 * 117.50385 * 359.97438 * 21 12 11 37 37 H 1.09006 * 117.49998 * 145.02263 * 21 12 11 38 38 H 1.09002 * 117.49722 * 214.97551 * 22 12 11 39 39 H 1.08993 * 117.49699 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0023 7 6 5.6860 -2.6095 -0.0022 8 6 6.1883 -4.0303 -0.0027 9 8 5.4032 -4.9487 -0.0036 10 8 7.5080 -4.2756 -0.0033 11 6 7.9197 -5.6680 -0.0043 12 6 9.4476 -5.7481 -0.0042 13 6 10.1265 -5.2114 1.2296 14 1 10.4707 -4.1881 1.2547 15 6 10.3082 -6.0270 2.3263 16 7 9.7814 -7.2320 2.3443 17 14 11.3027 -5.4207 3.7868 18 1 10.4011 -4.7420 4.7520 19 1 11.9606 -6.5744 4.4510 20 1 12.3368 -4.4635 3.3182 21 6 10.1649 -5.5617 -1.3427 22 6 10.0922 -6.9489 -0.6995 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6959 -2.0072 -0.0005 27 1 4.0096 -0.6534 0.8888 28 1 4.0089 -0.6531 -0.8911 29 1 3.7923 -3.1229 -0.8924 30 1 3.7930 -3.1240 0.8876 31 1 6.0493 -2.0965 0.8881 32 1 6.0493 -2.0950 -0.8918 33 1 7.5303 -6.1627 0.8855 34 1 7.5297 -6.1615 -0.8946 35 1 9.9095 -7.8059 3.1157 36 1 9.5483 -5.3825 -2.2235 37 1 11.1281 -5.0514 -1.3309 38 1 11.0075 -7.3505 -0.2647 39 1 9.4278 -7.6821 -1.1566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174736403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:58 Heat of formation + Delta-G solvation = -118.348481 kcal Electronic energy + Delta-G solvation = -19891.507278 eV Core-core repulsion = 16606.527050 eV Total energy + Delta-G solvation = -3284.980228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96923 -39.66435 -36.96034 -35.89506 -35.19744 -33.00678 -31.98332 -30.28950 -27.65226 -26.19460 -25.15954 -22.36218 -21.22064 -20.97268 -19.92217 -19.27950 -17.30523 -16.87804 -16.63343 -16.40891 -16.04953 -15.68763 -15.14238 -14.78110 -14.53874 -13.89942 -13.66180 -13.25410 -13.05181 -12.86831 -12.36172 -12.31514 -12.20987 -11.91245 -11.67049 -11.52535 -11.06525 -11.00177 -10.88835 -10.55253 -10.31730 -10.18857 -10.04947 -9.88452 -9.58170 -9.34784 -8.85019 -8.49200 -8.23959 -6.09720 -4.15087 2.38479 2.71753 2.87544 3.26774 3.34022 3.37732 3.39255 4.36892 4.50087 4.71961 4.80131 4.84333 4.90451 5.05071 5.18542 5.22410 5.35524 5.39125 5.45121 5.58723 5.62115 5.90504 5.95332 6.00312 6.16217 6.21555 6.30267 6.49661 6.63083 6.70838 7.00570 7.21618 7.23489 7.33952 7.44991 7.83764 7.95335 8.32233 8.41339 8.86885 9.50965 10.99626 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.003207 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.801427 B = 8729.693772 C = 9251.947768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.549 6.549 4 N -0.730 5.730 5 C 0.116 3.884 6 C -0.120 4.120 7 C -0.112 4.112 8 C 0.453 3.547 9 O -0.526 6.526 10 O -0.337 6.337 11 C 0.116 3.884 12 C 0.036 3.964 13 C -0.490 4.490 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.205 4.205 22 C -0.145 4.145 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.403 0.597 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 8.618 -5.032 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.427 6.427 4 N -0.383 5.383 5 C -0.007 4.007 6 C -0.158 4.158 7 C -0.150 4.150 8 C 0.297 3.703 9 O -0.417 6.417 10 O -0.252 6.252 11 C 0.043 3.957 12 C 0.036 3.964 13 C -0.528 4.528 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.242 4.242 22 C -0.182 4.182 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.237 0.763 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.350 8.900 -4.914 17.587 hybrid contribution 0.242 -0.500 0.875 1.036 sum -14.108 8.401 -4.039 16.909 Atomic orbital electron populations 1.21883 0.91670 1.04876 1.04815 1.20828 0.90661 0.83449 0.75570 1.90736 1.70884 1.31453 1.49619 1.46107 1.07656 1.08918 1.75623 1.21381 0.79505 0.96981 1.02863 1.21580 0.94174 0.95473 1.04541 1.21186 0.95435 0.92189 1.06197 1.23468 0.82028 0.92088 0.72730 1.90610 1.57341 1.47141 1.46625 1.86519 1.23266 1.33588 1.81869 1.22903 0.96594 0.76084 1.00134 1.18784 0.87525 0.98757 0.91338 1.20394 1.37818 0.97810 0.96777 0.91838 1.25023 0.95289 0.94910 0.98266 1.70002 1.43306 1.08328 1.30206 0.86582 0.80489 0.78403 0.82508 1.20598 1.21150 1.19705 1.23015 1.02409 1.01497 0.97325 1.22537 1.02573 0.89943 1.03167 0.88831 0.88910 0.90143 0.76270 0.91037 0.91096 0.90328 0.90209 0.87444 0.87684 0.90655 0.94339 0.92895 0.91563 0.90037 0.89394 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.30 36.00 0.37 -0.57 16 2 C 0.51 4.98 7.94 -10.99 -0.09 4.89 16 3 O -0.55 -8.00 17.10 5.56 0.10 -7.90 16 4 N -0.73 -6.06 5.56 -60.30 -0.33 -6.39 16 5 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 6 C -0.12 -1.21 4.62 -26.73 -0.12 -1.33 16 7 C -0.11 -1.34 5.81 -27.88 -0.16 -1.50 16 8 C 0.45 8.11 7.96 36.01 0.29 8.39 16 9 O -0.53 -10.59 15.73 -18.75 -0.29 -10.89 16 10 O -0.34 -7.17 10.16 -39.24 -0.40 -7.57 16 11 C 0.12 2.72 5.29 37.16 0.20 2.91 16 12 C 0.04 0.90 1.62 -155.66 -0.25 0.65 16 13 C -0.49 -13.28 8.78 -34.44 -0.30 -13.58 16 14 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 15 C 0.07 1.85 5.38 -17.82 -0.10 1.75 16 16 N -0.88 -24.71 12.88 55.43 0.71 -24.00 16 17 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 22 C -0.14 -3.33 9.37 -26.69 -0.25 -3.58 16 23 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.40 2.30 8.47 -40.82 -0.35 1.95 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.80 8.10 -51.93 -0.42 0.37 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.95 8.13 -51.93 -0.42 1.53 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -33.14 341.57 -7.03 -40.17 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.23 Total: 1.15 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.71 Total: -5.59 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.38 Total: -30.39 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.60 Total: -26.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.14 -7.03 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174736403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.180 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds