Wall clock time and date at job start Mon Mar 30 2020 04:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99908 * 2 1 4 4 N 1.34774 * 120.00416 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00419 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47343 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47038 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46974 * 179.97438 * 7 6 5 9 9 O 1.20827 * 119.99945 * 0.02562 * 8 7 6 10 10 O 1.34222 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00083 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47352 * 180.02562 * 11 10 8 13 13 C 1.50706 * 115.54986 * 65.10179 * 12 11 10 14 14 H 1.07994 * 120.00031 * 266.11359 * 13 12 11 15 15 C 1.37878 * 119.99497 * 86.11060 * 13 12 11 16 16 N 1.31521 * 120.00296 * 353.70275 * 15 13 12 17 17 Si 1.86801 * 119.99921 * 173.70088 * 15 13 12 18 18 H 1.48499 * 109.46974 * 90.00184 * 17 15 13 19 19 H 1.48496 * 109.47200 * 210.00081 * 17 15 13 20 20 H 1.48497 * 109.46993 * 330.00604 * 17 15 13 21 21 C 1.53000 * 117.49708 * 279.44047 * 12 11 10 22 22 C 1.53001 * 117.50116 * 210.77601 * 12 11 10 23 23 H 1.09001 * 109.46766 * 269.99765 * 1 2 3 24 24 H 1.08998 * 109.47301 * 29.99940 * 1 2 3 25 25 H 1.09003 * 109.46991 * 150.00069 * 1 2 3 26 26 H 0.96998 * 119.99749 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.47106 * 59.99642 * 5 4 2 28 28 H 1.09001 * 109.46929 * 299.99786 * 5 4 2 29 29 H 1.09000 * 109.47324 * 59.99761 * 6 5 4 30 30 H 1.09001 * 109.46921 * 299.99775 * 6 5 4 31 31 H 1.08993 * 109.47445 * 60.00011 * 7 6 5 32 32 H 1.09001 * 109.47077 * 299.99675 * 7 6 5 33 33 H 1.09004 * 109.46987 * 299.99839 * 11 10 8 34 34 H 1.09004 * 109.47073 * 60.00079 * 11 10 8 35 35 H 0.96998 * 120.00160 * 179.97438 * 16 15 13 36 36 H 1.08999 * 117.50385 * 359.97438 * 21 12 11 37 37 H 1.09006 * 117.49998 * 145.02263 * 21 12 11 38 38 H 1.09002 * 117.49722 * 214.97551 * 22 12 11 39 39 H 1.08993 * 117.49699 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0023 7 6 5.6860 -2.6095 -0.0022 8 6 6.1883 -4.0303 -0.0027 9 8 5.4032 -4.9487 -0.0036 10 8 7.5080 -4.2756 -0.0033 11 6 7.9197 -5.6680 -0.0043 12 6 9.4476 -5.7481 -0.0042 13 6 10.1265 -5.2114 1.2296 14 1 10.4707 -4.1881 1.2547 15 6 10.3082 -6.0270 2.3263 16 7 9.7814 -7.2320 2.3443 17 14 11.3027 -5.4207 3.7868 18 1 10.4011 -4.7420 4.7520 19 1 11.9606 -6.5744 4.4510 20 1 12.3368 -4.4635 3.3182 21 6 10.1649 -5.5617 -1.3427 22 6 10.0922 -6.9489 -0.6995 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6959 -2.0072 -0.0005 27 1 4.0096 -0.6534 0.8888 28 1 4.0089 -0.6531 -0.8911 29 1 3.7923 -3.1229 -0.8924 30 1 3.7930 -3.1240 0.8876 31 1 6.0493 -2.0965 0.8881 32 1 6.0493 -2.0950 -0.8918 33 1 7.5303 -6.1627 0.8855 34 1 7.5297 -6.1615 -0.8946 35 1 9.9095 -7.8059 3.1157 36 1 9.5483 -5.3825 -2.2235 37 1 11.1281 -5.0514 -1.3309 38 1 11.0075 -7.3505 -0.2647 39 1 9.4278 -7.6821 -1.1566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174736403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:57 Heat of formation + Delta-G solvation = -139.583025 kcal Electronic energy + Delta-G solvation = -19892.428077 eV Core-core repulsion = 16606.527050 eV Total energy + Delta-G solvation = -3285.901027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39248 -40.55637 -38.66794 -37.12886 -36.55973 -34.03562 -33.91756 -30.93819 -29.05738 -27.70031 -26.91805 -23.38060 -22.93573 -21.88201 -21.20572 -21.08578 -18.63335 -18.35271 -17.68556 -17.63437 -17.29713 -16.78586 -16.60867 -16.43143 -15.75401 -15.47051 -14.86821 -14.48093 -14.14901 -13.80120 -13.69978 -13.46018 -13.39989 -13.03747 -12.92731 -12.90036 -12.83386 -12.51029 -12.38141 -12.09462 -11.94885 -11.68638 -11.63785 -11.36051 -10.98639 -10.77694 -10.49718 -10.11733 -10.08924 -8.15115 -6.26315 1.28540 1.40944 1.42799 1.52884 1.65019 1.79345 2.37569 2.41902 3.13954 3.41065 3.67548 3.94736 3.96031 3.97302 4.14567 4.21267 4.38864 4.47627 4.49459 4.54071 4.59360 4.65512 4.68923 4.73401 4.87140 4.96483 5.06521 5.08506 5.18212 5.20002 5.43857 5.46978 5.58281 5.73446 5.76424 6.35045 6.57463 6.79276 6.86228 7.26231 7.42613 8.93741 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025973 B = 0.003207 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.801427 B = 8729.693772 C = 9251.947768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.722 5.722 5 C 0.121 3.879 6 C -0.107 4.107 7 C -0.104 4.104 8 C 0.448 3.552 9 O -0.552 6.552 10 O -0.350 6.350 11 C 0.129 3.871 12 C 0.003 3.997 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.023 3.977 16 N -0.910 5.910 17 Si 0.952 3.048 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.177 4.177 22 C -0.147 4.147 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.417 0.583 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.261 0.739 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 9.532 -5.521 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.291 3.709 3 O -0.486 6.486 4 N -0.375 5.375 5 C -0.003 4.003 6 C -0.144 4.144 7 C -0.141 4.141 8 C 0.293 3.707 9 O -0.444 6.444 10 O -0.266 6.266 11 C 0.055 3.945 12 C 0.002 3.998 13 C -0.543 4.543 14 H 0.074 0.926 15 C -0.178 4.178 16 N -0.548 5.548 17 Si 0.778 3.222 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.214 4.214 22 C -0.185 4.185 23 H 0.127 0.873 24 H 0.110 0.890 25 H 0.126 0.874 26 H 0.254 0.746 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.197 9.792 -5.412 18.871 hybrid contribution 0.449 -0.786 0.999 1.349 sum -14.748 9.006 -4.412 17.835 Atomic orbital electron populations 1.21901 0.88138 1.06225 1.06153 1.21623 0.92388 0.82726 0.74211 1.90711 1.72260 1.33318 1.52294 1.46072 1.07304 1.09467 1.74623 1.21238 0.80330 0.96132 1.02578 1.21453 0.92741 0.95833 1.04420 1.21356 0.96521 0.88197 1.08070 1.24603 0.80596 0.94167 0.71286 1.90595 1.57460 1.48592 1.47712 1.86525 1.25520 1.32049 1.82509 1.22471 0.95907 0.77346 0.98760 1.18895 0.88255 1.00425 0.92199 1.20657 1.37959 0.97585 0.98125 0.92619 1.25728 0.96210 0.95098 1.00740 1.70106 1.44427 1.09314 1.30917 0.85646 0.79179 0.77984 0.79417 1.20333 1.20840 1.19029 1.23023 1.02286 0.99654 0.96481 1.22475 1.01906 0.90685 1.03430 0.87344 0.88951 0.87414 0.74593 0.91668 0.91159 0.90063 0.90771 0.86039 0.85089 0.94311 0.93315 0.92988 0.88979 0.89659 0.91248 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.30 71.23 0.73 -0.67 16 2 C 0.50 9.14 7.94 87.66 0.70 9.84 16 3 O -0.60 -17.42 17.10 -3.03 -0.05 -17.48 16 4 N -0.72 -10.65 5.56 -463.07 -2.57 -13.22 16 5 C 0.12 2.08 5.67 86.38 0.49 2.57 16 6 C -0.11 -1.95 4.62 30.60 0.14 -1.81 16 7 C -0.10 -2.29 5.81 29.85 0.17 -2.11 16 8 C 0.45 15.65 7.96 71.24 0.57 16.22 16 9 O -0.55 -22.04 15.73 21.96 0.35 -21.69 16 10 O -0.35 -14.76 10.16 -51.34 -0.52 -15.28 16 11 C 0.13 6.08 5.29 71.98 0.38 6.46 16 12 C 0.00 0.13 1.62 -52.92 -0.09 0.05 16 13 C -0.51 -27.52 8.78 25.60 0.22 -27.30 16 14 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 15 C 0.02 1.23 5.38 84.65 0.46 1.68 16 16 N -0.91 -51.80 12.88 21.45 0.28 -51.53 16 17 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C -0.18 -7.38 9.96 30.62 0.30 -7.07 16 22 C -0.15 -6.75 9.37 30.62 0.29 -6.46 16 23 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.42 3.75 8.47 -92.71 -0.79 2.97 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 30 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 31 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 34 H 0.05 2.14 8.09 -2.38 -0.02 2.12 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 38 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -72.52 341.57 4.12 -68.40 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.25 Total: 14.35 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.37 Total: -8.61 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -2.30 Total: -64.75 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.23 Total: -54.45 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.52 4.12 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174736403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.181 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds