Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.45055 * 2 1 4 4 N 1.34780 * 119.99895 * 292.31303 * 3 2 1 5 5 O 1.21286 * 120.00011 * 112.32102 * 3 2 1 6 6 C 1.53029 * 109.46394 * 240.02609 * 2 1 3 7 7 C 1.53120 * 109.27941 * 180.80646 * 6 2 1 8 8 C 1.53114 * 109.16316 * 57.65104 * 7 6 2 9 9 C 1.53040 * 109.27996 * 302.35005 * 8 7 6 10 10 N 1.46841 * 109.46103 * 119.96987 * 2 1 3 11 11 C 1.46903 * 111.00248 * 305.85750 * 10 2 1 12 12 C 1.50697 * 109.47142 * 159.88391 * 11 10 2 13 13 O 1.21294 * 120.00335 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00030 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00366 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99780 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00292 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99819 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47412 * 60.00256 * 19 17 15 21 21 H 1.48502 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47609 * 299.99763 * 19 17 15 23 23 H 1.09000 * 109.46944 * 188.48246 * 1 2 3 24 24 H 1.09005 * 109.47387 * 308.48082 * 1 2 3 25 25 H 1.08997 * 109.47099 * 68.48130 * 1 2 3 26 26 H 0.97001 * 120.00158 * 355.15720 * 4 3 2 27 27 H 0.96996 * 119.99719 * 175.15503 * 4 3 2 28 28 H 1.09004 * 109.50371 * 60.86320 * 6 2 1 29 29 H 1.09005 * 109.50119 * 300.74481 * 6 2 1 30 30 H 1.09000 * 109.52204 * 177.56202 * 7 6 2 31 31 H 1.09006 * 109.52173 * 297.68358 * 7 6 2 32 32 H 1.09009 * 109.50254 * 62.28888 * 8 7 6 33 33 H 1.08994 * 109.50363 * 182.36522 * 8 7 6 34 34 H 1.08999 * 109.46249 * 179.19296 * 9 8 7 35 35 H 1.09003 * 109.45814 * 299.16356 * 9 8 7 36 36 H 1.08999 * 109.47095 * 279.88190 * 11 10 2 37 37 H 1.08994 * 109.46874 * 39.88355 * 11 10 2 38 38 H 0.96997 * 120.00189 * 359.97438 * 14 12 11 39 39 H 0.96998 * 119.99611 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 7 1.8384 2.2040 -1.0798 5 8 2.6100 1.8600 0.9717 6 6 2.0399 -0.7208 -1.2499 7 6 3.5710 -0.7360 -1.2355 8 6 4.0548 -1.4187 0.0468 9 6 3.4865 -0.6776 1.2592 10 7 2.0193 -0.6916 1.1994 11 6 1.4372 -0.1104 2.4166 12 6 1.5438 -1.1013 3.5470 13 8 2.0548 -2.1849 3.3575 14 7 1.0714 -0.7835 4.7685 15 6 1.1688 -1.6847 5.7971 16 1 1.6238 -2.6495 5.6284 17 6 0.6812 -1.3572 7.0563 18 7 0.1271 -0.1834 7.2615 19 14 0.8134 -2.5854 8.4575 20 1 2.2424 -2.9088 8.6992 21 1 0.2244 -1.9982 9.6878 22 1 0.0788 -3.8255 8.0998 23 1 -0.3633 -1.0164 0.1516 24 1 -0.3634 0.6395 0.8045 25 1 -0.3633 0.3769 -0.9560 26 1 1.4394 1.8333 -1.8825 27 1 2.0981 3.1382 -1.0543 28 1 1.6895 -0.1981 -2.1399 29 1 1.6659 -1.7447 -1.2575 30 1 3.9380 -1.2863 -2.1019 31 1 3.9457 0.2871 -1.2683 32 1 3.7125 -2.4536 0.0596 33 1 5.1439 -1.3952 0.0829 34 1 3.8175 -1.1698 2.1737 35 1 3.8403 0.3534 1.2532 36 1 1.9772 0.7994 2.6788 37 1 0.3884 0.1276 2.2398 38 1 0.6630 0.0832 4.9202 39 1 -0.2130 0.0453 8.1407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185911603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = -67.714644 kcal Electronic energy + Delta-G solvation = -21946.013465 eV Core-core repulsion = 18695.521636 eV Total energy + Delta-G solvation = -3250.491829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97790 -38.03740 -37.00733 -34.35642 -33.76627 -33.31740 -31.73660 -31.06432 -27.64136 -26.82096 -24.57292 -23.38613 -22.72504 -20.87549 -19.27028 -19.04314 -17.76387 -17.31680 -16.30785 -15.82099 -15.49117 -15.11216 -14.79634 -14.45014 -14.05372 -13.89457 -13.69759 -13.45188 -13.19985 -12.74712 -12.35121 -12.06066 -11.99927 -11.76729 -11.48585 -11.38451 -11.24849 -10.92933 -10.60345 -10.36624 -10.26156 -10.13123 -10.11571 -10.04348 -9.66109 -9.34917 -8.31858 -7.83386 -7.61808 -6.29825 -3.70163 2.60819 3.27642 3.32025 3.36716 3.48366 3.96128 4.08461 4.31732 4.65370 4.70407 4.84011 4.98639 5.19298 5.29430 5.36756 5.38684 5.48366 5.63507 5.69214 5.79114 5.91079 5.96539 6.03301 6.09304 6.18033 6.19179 6.28803 6.44544 6.56193 6.60410 6.73911 7.17659 7.38778 7.48562 7.65679 8.18684 8.23929 8.76045 9.30704 9.69228 10.22307 10.88304 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.004889 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.204863 B = 5726.019531 C = 6095.549670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 C 0.496 3.504 4 N -0.858 5.858 5 O -0.534 6.534 6 C -0.102 4.102 7 C -0.124 4.124 8 C -0.115 4.115 9 C 0.041 3.959 10 N -0.477 5.477 11 C 0.031 3.969 12 C 0.449 3.551 13 O -0.578 6.578 14 N -0.569 5.569 15 C -0.296 4.296 16 H 0.101 0.899 17 C 0.020 3.980 18 N -0.905 5.905 19 Si 0.930 3.070 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.398 0.602 27 H 0.395 0.605 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.391 0.609 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 4.497 -19.285 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 C 0.280 3.720 4 N -0.422 5.422 5 O -0.410 6.410 6 C -0.140 4.140 7 C -0.161 4.161 8 C -0.153 4.153 9 C -0.086 4.086 10 N -0.199 5.199 11 C -0.100 4.100 12 C 0.235 3.765 13 O -0.462 6.462 14 N -0.206 5.206 15 C -0.425 4.425 16 H 0.119 0.881 17 C -0.181 4.181 18 N -0.546 5.546 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.225 0.775 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.224 0.776 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.669 3.433 -18.513 18.903 hybrid contribution -0.099 1.166 0.525 1.283 sum 1.570 4.599 -17.989 18.634 Atomic orbital electron populations 1.21957 0.91736 1.04399 1.01941 1.21391 0.96698 0.87787 0.94403 1.22207 0.78181 0.89286 0.82309 1.44116 1.66863 1.14265 1.16962 1.90704 1.41062 1.75228 1.33990 1.21642 0.96158 1.02008 0.94159 1.21639 0.95219 1.00618 0.98663 1.21571 0.99462 1.00616 0.93628 1.22368 0.86559 1.00124 0.99541 1.61942 1.08181 1.50375 0.99451 1.22114 1.00575 0.97115 0.90176 1.19820 0.84281 0.88780 0.83638 1.90493 1.48311 1.24303 1.83072 1.41848 1.53436 1.17489 1.07839 1.19635 1.36602 0.98449 0.87844 0.88085 1.25230 0.97053 0.97074 0.98708 1.69615 1.40290 1.20666 1.24066 0.85940 0.78610 0.80024 0.79733 1.20022 1.21082 1.19992 0.89836 0.91719 0.91822 0.77337 0.77485 0.91655 0.89541 0.91650 0.92680 0.90830 0.91937 0.89314 0.92747 0.90826 0.89620 0.77585 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.84 37.16 0.29 -1.33 16 2 C 0.09 1.21 0.59 -132.77 -0.08 1.13 16 3 C 0.50 6.60 4.95 -10.98 -0.05 6.55 16 4 N -0.86 -7.26 8.75 31.22 0.27 -6.99 16 5 O -0.53 -9.46 12.70 5.55 0.07 -9.39 16 6 C -0.10 -1.05 4.73 -26.65 -0.13 -1.18 16 7 C -0.12 -1.36 5.75 -26.61 -0.15 -1.52 16 8 C -0.11 -1.62 6.09 -26.65 -0.16 -1.78 16 9 C 0.04 0.74 4.79 -3.83 -0.02 0.72 16 10 N -0.48 -8.43 4.00 -221.78 -0.89 -9.32 16 11 C 0.03 0.62 4.63 -4.98 -0.02 0.60 16 12 C 0.45 11.32 7.49 -10.99 -0.08 11.24 16 13 O -0.58 -16.26 14.76 5.55 0.08 -16.18 16 14 N -0.57 -15.28 5.29 -10.96 -0.06 -15.34 16 15 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 16 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -25.59 13.05 55.50 0.72 -24.87 16 19 Si 0.93 21.78 29.55 -169.99 -5.02 16.75 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.40 2.16 7.67 -40.82 -0.31 1.85 16 27 H 0.39 2.97 8.93 -40.82 -0.36 2.61 16 28 H 0.06 0.46 7.06 -51.93 -0.37 0.09 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 7.32 -51.93 -0.38 0.24 16 32 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.88 6.73 -51.93 -0.35 1.53 16 35 H 0.05 1.02 5.46 -51.93 -0.28 0.73 16 36 H 0.07 1.55 6.14 -51.93 -0.32 1.23 16 37 H 0.09 1.56 5.43 -51.93 -0.28 1.28 16 38 H 0.39 10.19 7.90 -40.82 -0.32 9.87 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -34.50 304.81 -6.23 -40.73 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.36 Total: 13.82 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.65 Total: 6.18 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.05 Total: -56.51 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: 0.15 Total: -25.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.50 -6.23 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185911603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.984 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds