Wall clock time and date at job start Mon Mar 30 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.45055 * 2 1 4 4 N 1.34780 * 119.99895 * 292.31303 * 3 2 1 5 5 O 1.21286 * 120.00011 * 112.32102 * 3 2 1 6 6 C 1.53029 * 109.46394 * 240.02609 * 2 1 3 7 7 C 1.53120 * 109.27941 * 180.80646 * 6 2 1 8 8 C 1.53114 * 109.16316 * 57.65104 * 7 6 2 9 9 C 1.53040 * 109.27996 * 302.35005 * 8 7 6 10 10 N 1.46841 * 109.46103 * 119.96987 * 2 1 3 11 11 C 1.46903 * 111.00248 * 305.85750 * 10 2 1 12 12 C 1.50697 * 109.47142 * 159.88391 * 11 10 2 13 13 O 1.21294 * 120.00335 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00030 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00366 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99780 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00292 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99819 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47412 * 60.00256 * 19 17 15 21 21 H 1.48502 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47609 * 299.99763 * 19 17 15 23 23 H 1.09000 * 109.46944 * 188.48246 * 1 2 3 24 24 H 1.09005 * 109.47387 * 308.48082 * 1 2 3 25 25 H 1.08997 * 109.47099 * 68.48130 * 1 2 3 26 26 H 0.97001 * 120.00158 * 355.15720 * 4 3 2 27 27 H 0.96996 * 119.99719 * 175.15503 * 4 3 2 28 28 H 1.09004 * 109.50371 * 60.86320 * 6 2 1 29 29 H 1.09005 * 109.50119 * 300.74481 * 6 2 1 30 30 H 1.09000 * 109.52204 * 177.56202 * 7 6 2 31 31 H 1.09006 * 109.52173 * 297.68358 * 7 6 2 32 32 H 1.09009 * 109.50254 * 62.28888 * 8 7 6 33 33 H 1.08994 * 109.50363 * 182.36522 * 8 7 6 34 34 H 1.08999 * 109.46249 * 179.19296 * 9 8 7 35 35 H 1.09003 * 109.45814 * 299.16356 * 9 8 7 36 36 H 1.08999 * 109.47095 * 279.88190 * 11 10 2 37 37 H 1.08994 * 109.46874 * 39.88355 * 11 10 2 38 38 H 0.96997 * 120.00189 * 359.97438 * 14 12 11 39 39 H 0.96998 * 119.99611 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 7 1.8384 2.2040 -1.0798 5 8 2.6100 1.8600 0.9717 6 6 2.0399 -0.7208 -1.2499 7 6 3.5710 -0.7360 -1.2355 8 6 4.0548 -1.4187 0.0468 9 6 3.4865 -0.6776 1.2592 10 7 2.0193 -0.6916 1.1994 11 6 1.4372 -0.1104 2.4166 12 6 1.5438 -1.1013 3.5470 13 8 2.0548 -2.1849 3.3575 14 7 1.0714 -0.7835 4.7685 15 6 1.1688 -1.6847 5.7971 16 1 1.6238 -2.6495 5.6284 17 6 0.6812 -1.3572 7.0563 18 7 0.1271 -0.1834 7.2615 19 14 0.8134 -2.5854 8.4575 20 1 2.2424 -2.9088 8.6992 21 1 0.2244 -1.9982 9.6878 22 1 0.0788 -3.8255 8.0998 23 1 -0.3633 -1.0164 0.1516 24 1 -0.3634 0.6395 0.8045 25 1 -0.3633 0.3769 -0.9560 26 1 1.4394 1.8333 -1.8825 27 1 2.0981 3.1382 -1.0543 28 1 1.6895 -0.1981 -2.1399 29 1 1.6659 -1.7447 -1.2575 30 1 3.9380 -1.2863 -2.1019 31 1 3.9457 0.2871 -1.2683 32 1 3.7125 -2.4536 0.0596 33 1 5.1439 -1.3952 0.0829 34 1 3.8175 -1.1698 2.1737 35 1 3.8403 0.3534 1.2532 36 1 1.9772 0.7994 2.6788 37 1 0.3884 0.1276 2.2398 38 1 0.6630 0.0832 4.9202 39 1 -0.2130 0.0453 8.1407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185911603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:19 Heat of formation + Delta-G solvation = -97.228413 kcal Electronic energy + Delta-G solvation = -21947.293278 eV Core-core repulsion = 18695.521636 eV Total energy + Delta-G solvation = -3251.771642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11706 -39.93207 -38.25705 -35.99286 -35.27272 -34.52933 -33.22198 -32.80087 -29.13729 -27.99272 -26.47907 -24.39980 -24.10954 -21.96410 -20.99541 -20.28663 -19.87836 -18.35382 -17.63340 -17.31650 -16.75532 -16.54929 -16.34443 -15.99827 -15.65122 -15.32060 -15.04113 -14.79559 -14.64307 -13.96675 -13.86520 -13.45285 -13.41581 -12.98636 -12.91988 -12.83598 -12.62040 -12.43029 -12.41535 -12.12005 -11.70181 -11.52555 -11.34625 -11.22936 -11.16703 -10.58922 -10.28545 -9.99989 -9.07103 -8.44955 -5.94416 1.39928 1.40310 1.52333 1.59704 2.07384 2.28360 2.58673 2.68578 3.20741 3.45005 3.71467 3.80276 3.94069 4.00008 4.13262 4.32605 4.37726 4.44618 4.59189 4.60514 4.69142 4.82096 4.87717 4.95626 4.98059 5.01691 5.21216 5.23718 5.27612 5.40483 5.47453 5.86932 5.93510 6.06849 6.15039 6.50063 6.61556 7.13451 7.36631 7.56842 8.13277 8.72758 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.004889 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.204863 B = 5726.019531 C = 6095.549670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 C 0.496 3.504 4 N -0.829 5.829 5 O -0.586 6.586 6 C -0.099 4.099 7 C -0.118 4.118 8 C -0.112 4.112 9 C 0.045 3.955 10 N -0.490 5.490 11 C 0.049 3.951 12 C 0.445 3.555 13 O -0.612 6.612 14 N -0.578 5.578 15 C -0.333 4.333 16 H 0.079 0.921 17 C -0.016 4.016 18 N -0.924 5.924 19 Si 0.997 3.003 20 H -0.273 1.273 21 H -0.269 1.269 22 H -0.269 1.269 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.418 0.582 27 H 0.404 0.596 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.393 0.607 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 4.932 -21.673 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.009 4.009 3 C 0.280 3.720 4 N -0.394 5.394 5 O -0.466 6.466 6 C -0.137 4.137 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.083 4.083 10 N -0.213 5.213 11 C -0.082 4.082 12 C 0.232 3.768 13 O -0.498 6.498 14 N -0.215 5.215 15 C -0.462 4.462 16 H 0.097 0.903 17 C -0.215 4.215 18 N -0.565 5.565 19 Si 0.820 3.180 20 H -0.198 1.198 21 H -0.194 1.194 22 H -0.194 1.194 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.250 0.750 27 H 0.236 0.764 28 H 0.131 0.869 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.226 0.774 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.798 3.902 -20.980 21.354 hybrid contribution 0.161 1.073 1.197 1.615 sum 0.959 4.975 -19.783 20.421 Atomic orbital electron populations 1.22010 0.90197 1.03830 1.03958 1.21663 0.97881 0.88007 0.93361 1.22095 0.77722 0.89553 0.82609 1.43802 1.65162 1.14266 1.16205 1.90698 1.43637 1.76073 1.36226 1.21752 0.95508 1.02273 0.94150 1.21625 0.95831 1.00556 0.97509 1.21558 0.99903 0.99728 0.93809 1.22237 0.87250 0.99433 0.99336 1.61903 1.07792 1.51632 1.00004 1.21865 1.01837 0.94713 0.89774 1.20768 0.82593 0.89187 0.84258 1.90453 1.49406 1.26166 1.83743 1.41939 1.54007 1.17311 1.08286 1.19648 1.38613 0.98509 0.89472 0.90271 1.26092 0.95862 0.98982 1.00535 1.69691 1.39969 1.21828 1.25026 0.84945 0.78651 0.77744 0.76689 1.19831 1.19361 1.19429 0.90767 0.93178 0.87260 0.75013 0.76418 0.86866 0.89695 0.88638 0.92641 0.91944 0.91103 0.94224 0.93712 0.91939 0.87657 0.77412 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.84 71.98 0.56 -2.30 16 2 C 0.08 2.06 0.59 2.80 0.00 2.06 16 3 C 0.50 12.27 4.95 87.66 0.43 12.70 16 4 N -0.83 -11.01 8.75 -173.52 -1.52 -12.53 16 5 O -0.59 -20.82 12.70 -3.05 -0.04 -20.86 16 6 C -0.10 -1.67 4.73 30.64 0.14 -1.53 16 7 C -0.12 -2.24 5.75 30.67 0.18 -2.06 16 8 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 9 C 0.05 1.69 4.79 86.33 0.41 2.11 16 10 N -0.49 -17.64 4.00 -855.58 -3.42 -21.06 16 11 C 0.05 2.06 4.63 85.56 0.40 2.45 16 12 C 0.44 23.61 7.49 87.66 0.66 24.26 16 13 O -0.61 -36.42 14.76 -3.07 -0.05 -36.46 16 14 N -0.58 -32.54 5.29 -306.99 -1.62 -34.16 16 15 C -0.33 -20.09 9.68 84.04 0.81 -19.27 16 16 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 18 N -0.92 -52.65 13.05 21.66 0.28 -52.37 16 19 Si 1.00 44.89 29.55 68.60 2.03 46.92 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.15 6.40 -2.38 -0.02 1.14 16 25 H 0.11 1.18 8.13 -2.39 -0.02 1.16 16 26 H 0.42 2.32 7.67 -92.71 -0.71 1.60 16 27 H 0.40 4.75 8.93 -92.71 -0.83 3.92 16 28 H 0.11 0.87 7.06 -2.39 -0.02 0.85 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.08 7.32 -2.38 -0.02 1.06 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.82 6.73 -2.39 -0.02 1.81 16 35 H 0.04 1.76 5.46 -2.39 -0.01 1.74 16 36 H 0.06 2.78 6.14 -2.39 -0.01 2.77 16 37 H 0.11 3.92 5.43 -2.39 -0.01 3.91 16 38 H 0.39 21.38 7.90 -92.71 -0.73 20.65 16 39 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -79.77 304.81 -1.24 -81.01 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -1.16 Total: 34.43 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 4.26 Total: 15.07 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.28 Total: -120.11 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -0.08 Total: -57.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.77 -1.24 -81.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185911603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.218 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds