Wall clock time and date at job start Mon Mar 30 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46459 * 2 1 4 4 N 1.34774 * 120.00149 * 66.86380 * 3 2 1 5 5 O 1.21284 * 119.99619 * 246.86806 * 3 2 1 6 6 C 1.53035 * 109.46345 * 119.97647 * 2 1 3 7 7 C 1.53113 * 109.31383 * 179.16258 * 6 2 1 8 8 C 1.53121 * 109.15992 * 302.40788 * 7 6 2 9 9 C 1.53029 * 109.31182 * 57.59231 * 8 7 6 10 10 N 1.46849 * 109.52559 * 300.84258 * 9 8 7 11 11 C 1.46892 * 111.00488 * 185.83913 * 10 9 8 12 12 C 1.50707 * 109.47375 * 59.13499 * 11 10 9 13 13 O 1.21298 * 119.99303 * 7.21547 * 12 11 10 14 14 N 1.34769 * 120.00497 * 187.21388 * 12 11 10 15 15 C 1.37090 * 120.00288 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99812 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00514 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99757 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47010 * 119.99967 * 19 17 15 22 22 H 1.48500 * 109.47094 * 239.99886 * 19 17 15 23 23 H 1.09001 * 109.46933 * 300.02761 * 1 2 3 24 24 H 1.08998 * 109.47096 * 60.02152 * 1 2 3 25 25 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 26 26 H 0.96990 * 119.99909 * 4.93926 * 4 3 2 27 27 H 0.97001 * 119.99474 * 184.93855 * 4 3 2 28 28 H 1.09003 * 109.50328 * 299.12594 * 6 2 1 29 29 H 1.09001 * 109.50583 * 59.20064 * 6 2 1 30 30 H 1.09000 * 109.52239 * 62.27053 * 7 6 2 31 31 H 1.09001 * 109.52653 * 182.45772 * 7 6 2 32 32 H 1.09004 * 109.46732 * 297.64854 * 8 7 6 33 33 H 1.08997 * 109.54110 * 177.57695 * 8 7 6 34 34 H 1.09007 * 109.46503 * 180.83219 * 9 8 7 35 35 H 1.08996 * 109.45516 * 60.85416 * 9 8 7 36 36 H 1.09000 * 109.47469 * 179.13413 * 11 10 9 37 37 H 1.09004 * 109.47271 * 299.13500 * 11 10 9 38 38 H 0.97001 * 119.99682 * 0.02562 * 14 12 11 39 39 H 0.96994 * 119.99766 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 1.8243 2.2091 1.0733 5 8 2.6233 1.8550 -0.9659 6 6 2.0399 -0.7209 1.2499 7 6 3.5709 -0.7373 1.2359 8 6 4.0545 -1.4192 -0.0469 9 6 3.4863 -0.6780 -1.2592 10 7 2.0191 -0.6918 -1.1994 11 6 1.4371 -0.1106 -2.4165 12 6 1.8964 -0.8962 -3.6177 13 8 2.5269 -1.9214 -3.4669 14 7 1.6066 -0.4599 -4.8595 15 6 2.0239 -1.1748 -5.9522 16 1 2.5854 -2.0877 -5.8179 17 6 1.7256 -0.7247 -7.2324 18 7 1.0438 0.3868 -7.3958 19 14 2.2949 -1.6986 -8.7214 20 1 3.0388 -2.9022 -8.2706 21 1 1.1149 -2.1168 -9.5200 22 1 3.1832 -0.8512 -9.5570 23 1 -0.3633 0.5143 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.4157 1.8420 1.8727 27 1 2.0834 3.1434 1.0462 28 1 1.6897 -0.1981 2.1399 29 1 1.6652 -1.7445 1.2580 30 1 3.9464 0.2855 1.2678 31 1 3.9373 -1.2879 2.1023 32 1 3.7121 -2.4540 -0.0596 33 1 5.1436 -1.3959 -0.0839 34 1 3.8171 -1.1703 -2.1738 35 1 3.8403 0.3528 -1.2532 36 1 0.3496 -0.1473 -2.3525 37 1 1.7605 0.9257 -2.5148 38 1 1.1026 0.3602 -4.9800 39 1 0.8352 0.7008 -8.2895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185911624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:22 Heat of formation + Delta-G solvation = -65.228772 kcal Electronic energy + Delta-G solvation = -22013.825096 eV Core-core repulsion = 18763.441063 eV Total energy + Delta-G solvation = -3250.384033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97691 -38.11826 -36.95930 -34.35659 -33.77539 -33.31163 -31.65081 -31.10648 -27.63566 -26.77747 -24.59357 -23.35373 -22.70796 -20.82492 -19.26522 -19.07508 -17.78139 -17.29051 -16.29056 -15.85939 -15.48262 -15.08070 -14.67756 -14.44709 -14.06305 -13.88562 -13.66874 -13.48047 -13.27144 -12.76608 -12.31539 -12.05648 -12.00098 -11.69529 -11.47350 -11.39075 -11.28454 -10.98411 -10.54974 -10.29782 -10.22876 -10.14487 -10.11014 -10.02667 -9.61212 -9.32013 -8.24207 -7.86268 -7.58899 -6.32450 -3.72674 2.62942 3.22442 3.32060 3.39639 3.50325 3.98050 4.05895 4.30421 4.67495 4.72768 4.86065 5.02379 5.20163 5.31647 5.36349 5.37218 5.48874 5.67370 5.72934 5.82809 5.95417 5.99430 6.06776 6.10129 6.21773 6.22084 6.31884 6.43896 6.65091 6.74274 6.81558 7.20981 7.42841 7.54050 7.64123 8.16714 8.26635 8.72689 9.27851 9.65977 10.18254 10.85688 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.004988 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.605145 B = 5611.964400 C = 5978.899209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 C 0.496 3.504 4 N -0.858 5.858 5 O -0.530 6.530 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.113 4.113 9 C 0.027 3.973 10 N -0.478 5.478 11 C 0.027 3.973 12 C 0.449 3.551 13 O -0.580 6.580 14 N -0.565 5.565 15 C -0.296 4.296 16 H 0.103 0.897 17 C 0.020 3.980 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.398 0.602 27 H 0.395 0.605 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.392 0.608 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 2.991 19.400 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 C 0.280 3.720 4 N -0.423 5.423 5 O -0.406 6.406 6 C -0.139 4.139 7 C -0.162 4.162 8 C -0.151 4.151 9 C -0.099 4.099 10 N -0.201 5.201 11 C -0.104 4.104 12 C 0.235 3.765 13 O -0.464 6.464 14 N -0.201 5.201 15 C -0.425 4.425 16 H 0.121 0.879 17 C -0.181 4.181 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.226 0.774 27 H 0.225 0.775 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.225 0.775 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.682 1.979 18.603 18.720 hybrid contribution 0.022 1.303 -0.511 1.400 sum -0.660 3.283 18.091 18.398 Atomic orbital electron populations 1.21943 0.91822 1.04006 1.02238 1.21381 0.96620 0.87868 0.94531 1.22210 0.78313 0.89266 0.82240 1.44130 1.66406 1.14170 1.17570 1.90705 1.40466 1.75415 1.34058 1.21624 0.96235 1.01838 0.94163 1.21650 0.95163 1.00650 0.98750 1.21559 0.99481 1.00456 0.93639 1.22620 0.86282 1.00407 1.00638 1.62035 1.08704 1.50073 0.99283 1.22157 0.99877 0.98669 0.89669 1.19737 0.85348 0.87549 0.83914 1.90455 1.44196 1.26207 1.85587 1.41858 1.49593 1.24449 1.04248 1.19747 1.32225 1.07037 0.83524 0.87902 1.25253 0.97174 0.96607 0.99036 1.69633 1.39710 1.21538 1.23576 0.85813 0.78290 0.79497 0.80801 1.19255 1.20833 1.20847 0.92009 0.91531 0.90128 0.77386 0.77486 0.91720 0.89656 0.92726 0.91743 0.91053 0.92021 0.87327 0.92979 0.89547 0.90714 0.77515 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.02 37.16 0.30 -1.27 16 2 C 0.09 1.20 0.58 -132.76 -0.08 1.12 16 3 C 0.50 6.78 4.97 -10.99 -0.05 6.73 16 4 N -0.86 -7.52 8.75 31.22 0.27 -7.25 16 5 O -0.53 -9.77 12.49 5.55 0.07 -9.70 16 6 C -0.10 -1.05 4.74 -26.65 -0.13 -1.18 16 7 C -0.12 -1.43 5.76 -26.61 -0.15 -1.58 16 8 C -0.11 -1.67 6.09 -26.65 -0.16 -1.83 16 9 C 0.03 0.52 4.73 -3.84 -0.02 0.50 16 10 N -0.48 -8.51 4.25 -221.78 -0.94 -9.45 16 11 C 0.03 0.54 4.72 -4.98 -0.02 0.52 16 12 C 0.45 11.29 7.29 -10.99 -0.08 11.21 16 13 O -0.58 -16.15 13.73 5.54 0.08 -16.08 16 14 N -0.57 -15.17 5.29 -10.96 -0.06 -15.23 16 15 C -0.30 -8.56 9.68 -14.94 -0.14 -8.70 16 16 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -25.53 13.05 55.50 0.72 -24.81 16 19 Si 0.93 21.72 29.55 -169.99 -5.02 16.69 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.81 6.25 -51.93 -0.32 0.49 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.40 2.24 7.71 -40.82 -0.31 1.92 16 27 H 0.39 3.11 8.93 -40.82 -0.36 2.74 16 28 H 0.06 0.46 7.10 -51.93 -0.37 0.09 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.65 7.32 -51.93 -0.38 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 2.47 5.43 -51.93 -0.28 2.19 16 35 H 0.05 1.04 5.43 -51.93 -0.28 0.76 16 36 H 0.09 1.56 6.01 -51.93 -0.31 1.25 16 37 H 0.08 1.57 5.69 -51.93 -0.30 1.28 16 38 H 0.39 10.23 7.90 -40.82 -0.32 9.90 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -34.32 302.62 -6.25 -40.57 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.29 Total: 14.71 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.64 Total: 5.98 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.00 Total: -56.74 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: 0.15 Total: -25.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.32 -6.25 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185911624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.660 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds