Wall clock time and date at job start Mon Mar 30 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46459 * 2 1 4 4 N 1.34774 * 120.00149 * 66.86380 * 3 2 1 5 5 O 1.21284 * 119.99619 * 246.86806 * 3 2 1 6 6 C 1.53035 * 109.46345 * 119.97647 * 2 1 3 7 7 C 1.53113 * 109.31383 * 179.16258 * 6 2 1 8 8 C 1.53121 * 109.15992 * 302.40788 * 7 6 2 9 9 C 1.53029 * 109.31182 * 57.59231 * 8 7 6 10 10 N 1.46849 * 109.52559 * 300.84258 * 9 8 7 11 11 C 1.46892 * 111.00488 * 185.83913 * 10 9 8 12 12 C 1.50707 * 109.47375 * 59.13499 * 11 10 9 13 13 O 1.21298 * 119.99303 * 7.21547 * 12 11 10 14 14 N 1.34769 * 120.00497 * 187.21388 * 12 11 10 15 15 C 1.37090 * 120.00288 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99812 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00514 * 180.02562 * 15 14 12 18 18 N 1.31416 * 119.99757 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00483 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47010 * 119.99967 * 19 17 15 22 22 H 1.48500 * 109.47094 * 239.99886 * 19 17 15 23 23 H 1.09001 * 109.46933 * 300.02761 * 1 2 3 24 24 H 1.08998 * 109.47096 * 60.02152 * 1 2 3 25 25 H 1.08997 * 109.47311 * 180.02562 * 1 2 3 26 26 H 0.96990 * 119.99909 * 4.93926 * 4 3 2 27 27 H 0.97001 * 119.99474 * 184.93855 * 4 3 2 28 28 H 1.09003 * 109.50328 * 299.12594 * 6 2 1 29 29 H 1.09001 * 109.50583 * 59.20064 * 6 2 1 30 30 H 1.09000 * 109.52239 * 62.27053 * 7 6 2 31 31 H 1.09001 * 109.52653 * 182.45772 * 7 6 2 32 32 H 1.09004 * 109.46732 * 297.64854 * 8 7 6 33 33 H 1.08997 * 109.54110 * 177.57695 * 8 7 6 34 34 H 1.09007 * 109.46503 * 180.83219 * 9 8 7 35 35 H 1.08996 * 109.45516 * 60.85416 * 9 8 7 36 36 H 1.09000 * 109.47469 * 179.13413 * 11 10 9 37 37 H 1.09004 * 109.47271 * 299.13500 * 11 10 9 38 38 H 0.97001 * 119.99682 * 0.02562 * 14 12 11 39 39 H 0.96994 * 119.99766 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 1.8243 2.2091 1.0733 5 8 2.6233 1.8550 -0.9659 6 6 2.0399 -0.7209 1.2499 7 6 3.5709 -0.7373 1.2359 8 6 4.0545 -1.4192 -0.0469 9 6 3.4863 -0.6780 -1.2592 10 7 2.0191 -0.6918 -1.1994 11 6 1.4371 -0.1106 -2.4165 12 6 1.8964 -0.8962 -3.6177 13 8 2.5269 -1.9214 -3.4669 14 7 1.6066 -0.4599 -4.8595 15 6 2.0239 -1.1748 -5.9522 16 1 2.5854 -2.0877 -5.8179 17 6 1.7256 -0.7247 -7.2324 18 7 1.0438 0.3868 -7.3958 19 14 2.2949 -1.6986 -8.7214 20 1 3.0388 -2.9022 -8.2706 21 1 1.1149 -2.1168 -9.5200 22 1 3.1832 -0.8512 -9.5570 23 1 -0.3633 0.5143 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.4157 1.8420 1.8727 27 1 2.0834 3.1434 1.0462 28 1 1.6897 -0.1981 2.1399 29 1 1.6652 -1.7445 1.2580 30 1 3.9464 0.2855 1.2678 31 1 3.9373 -1.2879 2.1023 32 1 3.7121 -2.4540 -0.0596 33 1 5.1436 -1.3959 -0.0839 34 1 3.8171 -1.1703 -2.1738 35 1 3.8403 0.3528 -1.2532 36 1 0.3496 -0.1473 -2.3525 37 1 1.7605 0.9257 -2.5148 38 1 1.1026 0.3602 -4.9800 39 1 0.8352 0.7008 -8.2895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185911624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:22 Heat of formation + Delta-G solvation = -94.895606 kcal Electronic energy + Delta-G solvation = -22015.111547 eV Core-core repulsion = 18763.441063 eV Total energy + Delta-G solvation = -3251.670484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.14761 -39.99725 -38.22945 -36.04544 -35.25284 -34.52794 -33.24884 -32.74904 -29.13881 -27.94350 -26.49799 -24.38910 -24.11796 -21.93802 -21.03508 -20.30213 -19.88918 -18.35360 -17.63533 -17.34652 -16.74666 -16.62307 -16.30393 -15.86889 -15.66843 -15.37285 -15.12113 -14.81499 -14.65200 -13.99375 -13.75544 -13.47989 -13.35768 -13.02749 -12.93123 -12.81958 -12.64264 -12.41880 -12.38582 -12.11554 -11.68780 -11.60214 -11.31263 -11.24133 -11.14272 -10.56076 -10.21045 -9.99343 -9.04507 -8.47048 -5.96243 1.35649 1.39597 1.55119 1.59442 2.03896 2.27704 2.58695 2.72255 3.19222 3.38940 3.73365 3.82194 3.96908 4.02740 4.16772 4.34130 4.38500 4.48366 4.61672 4.64711 4.71233 4.83112 4.90749 4.97816 5.01862 5.04818 5.22335 5.26806 5.32672 5.39807 5.48286 5.87047 5.93489 6.06321 6.16984 6.50337 6.59199 7.11503 7.36840 7.54337 8.10248 8.71228 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031361 B = 0.004988 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.605145 B = 5611.964400 C = 5978.899209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 C 0.494 3.506 4 N -0.830 5.830 5 O -0.587 6.587 6 C -0.098 4.098 7 C -0.119 4.119 8 C -0.111 4.111 9 C 0.032 3.968 10 N -0.487 5.487 11 C 0.043 3.957 12 C 0.443 3.557 13 O -0.611 6.611 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.080 0.920 17 C -0.016 4.016 18 N -0.924 5.924 19 Si 0.997 3.003 20 H -0.272 1.272 21 H -0.268 1.268 22 H -0.271 1.271 23 H 0.104 0.896 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.418 0.582 27 H 0.404 0.596 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.393 0.607 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 3.301 21.821 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 C 0.279 3.721 4 N -0.395 5.395 5 O -0.467 6.467 6 C -0.135 4.135 7 C -0.156 4.156 8 C -0.149 4.149 9 C -0.095 4.095 10 N -0.211 5.211 11 C -0.087 4.087 12 C 0.231 3.769 13 O -0.497 6.497 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.098 0.902 17 C -0.215 4.215 18 N -0.565 5.565 19 Si 0.820 3.180 20 H -0.197 1.197 21 H -0.193 1.193 22 H -0.197 1.197 23 H 0.122 0.878 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.250 0.750 27 H 0.235 0.765 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.738 2.319 21.103 21.301 hybrid contribution 0.337 1.246 -1.179 1.749 sum -1.401 3.565 19.924 20.289 Atomic orbital electron populations 1.22005 0.89816 1.04587 1.03548 1.21674 0.98134 0.87793 0.93420 1.22186 0.77764 0.89712 0.82456 1.43818 1.64709 1.14139 1.16832 1.90697 1.43204 1.76366 1.36451 1.21737 0.95262 1.02376 0.94164 1.21632 0.96090 1.00368 0.97505 1.21536 0.99654 0.99796 0.93870 1.22406 0.87448 0.99310 1.00359 1.62026 1.07847 1.51268 0.99926 1.21962 1.00981 0.96995 0.88807 1.20689 0.84048 0.87355 0.84800 1.90428 1.45231 1.27834 1.86242 1.41946 1.50123 1.24513 1.04665 1.19727 1.33976 1.07324 0.85120 0.90218 1.26114 0.96633 0.97488 1.01273 1.69704 1.39713 1.22328 1.24747 0.84816 0.78267 0.77890 0.76983 1.19693 1.19268 1.19664 0.87753 0.93190 0.89937 0.74994 0.76497 0.86942 0.89359 0.93029 0.88657 0.91768 0.91645 0.92517 0.94548 0.87370 0.91632 0.77395 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.02 71.98 0.58 -2.11 16 2 C 0.08 2.03 0.58 2.80 0.00 2.03 16 3 C 0.49 12.65 4.97 87.66 0.44 13.09 16 4 N -0.83 -11.62 8.75 -173.53 -1.52 -13.13 16 5 O -0.59 -21.84 12.49 -3.04 -0.04 -21.88 16 6 C -0.10 -1.65 4.74 30.64 0.15 -1.51 16 7 C -0.12 -2.37 5.76 30.67 0.18 -2.19 16 8 C -0.11 -3.24 6.09 30.64 0.19 -3.05 16 9 C 0.03 1.27 4.73 86.32 0.41 1.68 16 10 N -0.49 -17.55 4.25 -855.58 -3.64 -21.19 16 11 C 0.04 1.80 4.72 85.56 0.40 2.21 16 12 C 0.44 23.55 7.29 87.66 0.64 24.19 16 13 O -0.61 -36.16 13.73 -3.09 -0.04 -36.20 16 14 N -0.58 -32.49 5.29 -306.98 -1.62 -34.12 16 15 C -0.33 -20.07 9.68 84.04 0.81 -19.26 16 16 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 17 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 18 N -0.92 -52.76 13.05 21.66 0.28 -52.48 16 19 Si 1.00 45.00 29.55 68.60 2.03 47.03 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.12 6.25 -2.39 -0.01 1.10 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.42 2.50 7.71 -92.72 -0.72 1.78 16 27 H 0.40 5.11 8.93 -92.71 -0.83 4.28 16 28 H 0.11 0.88 7.10 -2.39 -0.02 0.86 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.08 7.32 -2.39 -0.02 1.07 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.79 5.43 -2.38 -0.01 2.78 16 35 H 0.04 1.54 5.43 -2.39 -0.01 1.52 16 36 H 0.11 3.97 6.01 -2.39 -0.01 3.95 16 37 H 0.07 2.90 5.69 -2.39 -0.01 2.88 16 38 H 0.39 21.50 7.90 -92.71 -0.73 20.76 16 39 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -80.05 302.62 -1.46 -81.51 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -1.17 Total: 35.79 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 4.26 Total: 14.66 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -6.50 Total: -120.92 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -0.08 Total: -58.07 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.05 -1.46 -81.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185911624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.385 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds