Wall clock time and date at job start Mon Mar 30 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00092 * 2 1 4 4 O 1.20834 * 119.99424 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00188 * 179.72552 * 3 2 1 6 6 C 1.53005 * 109.47231 * 174.43520 * 5 3 2 7 7 C 1.53001 * 110.01606 * 297.96640 * 6 5 3 8 8 C 1.50701 * 109.47245 * 299.84865 * 7 6 5 9 9 O 1.21294 * 119.99378 * 354.39981 * 8 7 6 10 10 N 1.34765 * 119.99907 * 174.40101 * 8 7 6 11 11 C 1.37097 * 120.00107 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99729 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00419 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47001 * 89.99366 * 15 13 11 17 17 H 1.48494 * 109.47296 * 209.99604 * 15 13 11 18 18 H 1.48499 * 109.47044 * 329.99915 * 15 13 11 19 19 C 1.54262 * 110.03238 * 176.57371 * 6 5 3 20 20 C 1.54969 * 104.16126 * 217.13551 * 19 6 5 21 21 C 1.54897 * 102.77455 * 37.88918 * 20 19 6 22 22 C 1.53877 * 110.03034 * 59.35843 * 6 5 3 23 23 H 1.09000 * 109.46943 * 300.00182 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47322 * 294.42920 * 5 3 2 27 27 H 1.08992 * 109.47521 * 54.43379 * 5 3 2 28 28 H 1.09000 * 109.47037 * 59.84814 * 7 6 5 29 29 H 1.09004 * 109.46987 * 179.84273 * 7 6 5 30 30 H 0.96999 * 120.00102 * 359.97438 * 10 8 7 31 31 H 0.96997 * 120.00181 * 180.02562 * 14 13 11 32 32 H 1.08994 * 110.48907 * 335.78369 * 19 6 5 33 33 H 1.09004 * 110.48706 * 98.43095 * 19 6 5 34 34 H 1.08997 * 110.71903 * 279.57438 * 20 19 6 35 35 H 1.08999 * 110.76348 * 156.22326 * 20 19 6 36 36 H 1.08995 * 110.48066 * 203.40067 * 21 20 19 37 37 H 1.09001 * 110.48048 * 80.76109 * 21 20 19 38 38 H 1.09001 * 110.03152 * 238.57180 * 22 6 5 39 39 H 1.09002 * 110.03263 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0063 6 6 4.0010 2.7350 -0.1350 7 6 3.5154 3.2992 -1.4717 8 6 4.1091 2.4971 -2.6009 9 8 4.9263 1.6321 -2.3660 10 7 3.7322 2.7410 -3.8716 11 6 4.2720 2.0110 -4.8989 12 1 4.9996 1.2407 -4.6898 13 6 3.8837 2.2628 -6.2090 14 7 2.9988 3.2003 -6.4635 15 14 4.6197 1.2686 -7.6088 16 1 3.7840 0.0660 -7.8546 17 1 4.6631 2.1009 -8.8378 18 1 5.9972 0.8484 -7.2466 19 6 5.5374 2.8401 -0.0440 20 6 5.7819 4.1579 0.7340 21 6 4.6436 4.1518 1.7844 22 6 3.4328 3.5689 1.0268 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9474 0.8715 0.9444 27 1 3.9640 0.6952 -0.8267 28 1 2.4279 3.2407 -1.5171 29 1 3.8273 4.3397 -1.5617 30 1 3.0784 3.4325 -4.0593 31 1 2.7275 3.3759 -7.3780 32 1 5.9460 1.9918 0.5051 33 1 5.9756 2.8976 -1.0404 34 1 5.6919 5.0190 0.0718 35 1 6.7570 4.1439 1.2209 36 1 4.4304 5.1661 2.1217 37 1 4.9075 3.5153 2.6291 38 1 2.8117 4.3760 0.6383 39 1 2.8469 2.9334 1.6909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190742552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:53 Heat of formation + Delta-G solvation = -142.011468 kcal Electronic energy + Delta-G solvation = -21760.552823 eV Core-core repulsion = 18474.546491 eV Total energy + Delta-G solvation = -3286.006332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64800 -38.99907 -37.25971 -36.06046 -33.95478 -31.89254 -31.23838 -28.97300 -28.30526 -27.17873 -25.30275 -24.05856 -21.05077 -20.53215 -19.43293 -18.37447 -17.61264 -17.24417 -16.30344 -16.04324 -15.69139 -15.30484 -14.68550 -14.42652 -14.15399 -13.83184 -13.30987 -13.16631 -12.96038 -12.69689 -12.33284 -11.90151 -11.60612 -11.48164 -11.38433 -11.08172 -10.90018 -10.69220 -10.64260 -10.50499 -10.38498 -10.34544 -10.25742 -10.20539 -10.10955 -9.78637 -9.41433 -8.20254 -7.93447 -6.40229 -3.81064 2.52353 3.01040 3.18051 3.26643 3.32285 3.94543 4.18498 4.76695 4.84746 4.95382 5.18559 5.19510 5.26307 5.28198 5.29656 5.42655 5.53853 5.63375 5.77716 5.83996 5.86607 5.93905 6.01409 6.14190 6.19260 6.24862 6.32568 6.35711 6.46653 6.53712 6.63442 6.75393 6.77939 6.95598 7.56186 8.05355 8.07903 8.62495 9.18679 9.57571 10.08099 10.77379 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.006131 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.557899 B = 4566.218822 C = 5564.990697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.507 6.507 5 C -0.113 4.113 6 C -0.021 4.021 7 C -0.131 4.131 8 C 0.439 3.561 9 O -0.593 6.593 10 N -0.561 5.561 11 C -0.301 4.301 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.106 4.106 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.392 0.608 31 H 0.271 0.729 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -0.796 13.885 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.150 4.150 6 C -0.021 4.021 7 C -0.171 4.171 8 C 0.226 3.774 9 O -0.480 6.480 10 N -0.196 5.196 11 C -0.430 4.430 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.542 5.542 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.164 4.164 22 C -0.144 4.144 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.152 0.848 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.450 -1.008 13.834 13.946 hybrid contribution -0.486 0.033 -0.971 1.086 sum -1.936 -0.975 12.863 13.044 Atomic orbital electron populations 1.23190 0.77095 1.03238 1.02322 1.86536 1.22934 1.34216 1.84308 1.24137 0.92635 0.80986 0.71572 1.90601 1.67405 1.36007 1.45468 1.21863 0.86307 1.00409 1.06426 1.20615 0.95792 0.91637 0.94078 1.21786 1.02234 0.99948 0.93120 1.20020 0.86183 0.87318 0.83902 1.90423 1.37336 1.36539 1.83697 1.41964 1.38784 1.33968 1.04910 1.19723 1.22346 1.16026 0.84931 0.87847 1.25277 0.96776 0.97176 0.98751 1.69620 1.31631 1.31517 1.21403 0.85875 0.79486 0.79104 0.79921 1.20444 1.20953 1.19404 1.22491 0.93708 0.96204 1.01971 1.22570 0.97729 0.98748 0.97519 1.22410 0.95919 1.00176 0.97916 1.22247 0.96735 0.99328 0.96067 0.92295 0.91883 0.88551 0.88516 0.84828 0.89320 0.90336 0.77449 0.91880 0.91948 0.89156 0.91734 0.92090 0.92276 0.92192 0.91325 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.66 10.57 -39.26 -0.41 -6.08 16 3 C 0.46 7.73 7.07 36.00 0.25 7.99 16 4 O -0.51 -9.04 12.21 -18.76 -0.23 -9.27 16 5 C -0.11 -1.82 4.37 -27.88 -0.12 -1.94 16 6 C -0.02 -0.33 0.33 -153.39 -0.05 -0.38 16 7 C -0.13 -2.44 4.26 -27.88 -0.12 -2.56 16 8 C 0.44 10.15 6.91 -10.99 -0.08 10.07 16 9 O -0.59 -14.68 11.58 5.55 0.06 -14.62 16 10 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 11 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 12 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 15 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.11 -1.66 5.14 -25.03 -0.13 -1.79 16 20 C -0.13 -1.66 6.91 -24.69 -0.17 -1.83 16 21 C -0.13 -1.52 6.83 -25.07 -0.17 -1.69 16 22 C -0.11 -1.49 4.66 -25.61 -0.12 -1.61 16 23 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 27 H 0.13 2.53 5.74 -51.93 -0.30 2.23 16 28 H 0.09 1.71 5.95 -51.93 -0.31 1.41 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.39 9.91 7.90 -40.82 -0.32 9.58 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.06 0.91 7.83 -51.93 -0.41 0.51 16 33 H 0.09 1.69 5.96 -51.93 -0.31 1.38 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 39 H 0.06 0.82 6.74 -51.93 -0.35 0.47 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -30.12 312.25 -5.81 -35.93 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.71 Total: 12.09 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 0.12 Total: -0.28 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.67 Total: -38.59 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.58 Total: -29.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.12 -5.81 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190742552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.077 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds