Wall clock time and date at job start Mon Mar 30 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00092 * 2 1 4 4 O 1.20834 * 119.99424 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00188 * 179.72552 * 3 2 1 6 6 C 1.53005 * 109.47231 * 174.43520 * 5 3 2 7 7 C 1.53001 * 110.01606 * 297.96640 * 6 5 3 8 8 C 1.50701 * 109.47245 * 299.84865 * 7 6 5 9 9 O 1.21294 * 119.99378 * 354.39981 * 8 7 6 10 10 N 1.34765 * 119.99907 * 174.40101 * 8 7 6 11 11 C 1.37097 * 120.00107 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99729 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00419 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47001 * 89.99366 * 15 13 11 17 17 H 1.48494 * 109.47296 * 209.99604 * 15 13 11 18 18 H 1.48499 * 109.47044 * 329.99915 * 15 13 11 19 19 C 1.54262 * 110.03238 * 176.57371 * 6 5 3 20 20 C 1.54969 * 104.16126 * 217.13551 * 19 6 5 21 21 C 1.54897 * 102.77455 * 37.88918 * 20 19 6 22 22 C 1.53877 * 110.03034 * 59.35843 * 6 5 3 23 23 H 1.09000 * 109.46943 * 300.00182 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47322 * 294.42920 * 5 3 2 27 27 H 1.08992 * 109.47521 * 54.43379 * 5 3 2 28 28 H 1.09000 * 109.47037 * 59.84814 * 7 6 5 29 29 H 1.09004 * 109.46987 * 179.84273 * 7 6 5 30 30 H 0.96999 * 120.00102 * 359.97438 * 10 8 7 31 31 H 0.96997 * 120.00181 * 180.02562 * 14 13 11 32 32 H 1.08994 * 110.48907 * 335.78369 * 19 6 5 33 33 H 1.09004 * 110.48706 * 98.43095 * 19 6 5 34 34 H 1.08997 * 110.71903 * 279.57438 * 20 19 6 35 35 H 1.08999 * 110.76348 * 156.22326 * 20 19 6 36 36 H 1.08995 * 110.48066 * 203.40067 * 21 20 19 37 37 H 1.09001 * 110.48048 * 80.76109 * 21 20 19 38 38 H 1.09001 * 110.03152 * 238.57180 * 22 6 5 39 39 H 1.09002 * 110.03263 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0063 6 6 4.0010 2.7350 -0.1350 7 6 3.5154 3.2992 -1.4717 8 6 4.1091 2.4971 -2.6009 9 8 4.9263 1.6321 -2.3660 10 7 3.7322 2.7410 -3.8716 11 6 4.2720 2.0110 -4.8989 12 1 4.9996 1.2407 -4.6898 13 6 3.8837 2.2628 -6.2090 14 7 2.9988 3.2003 -6.4635 15 14 4.6197 1.2686 -7.6088 16 1 3.7840 0.0660 -7.8546 17 1 4.6631 2.1009 -8.8378 18 1 5.9972 0.8484 -7.2466 19 6 5.5374 2.8401 -0.0440 20 6 5.7819 4.1579 0.7340 21 6 4.6436 4.1518 1.7844 22 6 3.4328 3.5689 1.0268 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9474 0.8715 0.9444 27 1 3.9640 0.6952 -0.8267 28 1 2.4279 3.2407 -1.5171 29 1 3.8273 4.3397 -1.5617 30 1 3.0784 3.4325 -4.0593 31 1 2.7275 3.3759 -7.3780 32 1 5.9460 1.9918 0.5051 33 1 5.9756 2.8976 -1.0404 34 1 5.6919 5.0190 0.0718 35 1 6.7570 4.1439 1.2209 36 1 4.4304 5.1661 2.1217 37 1 4.9075 3.5153 2.6291 38 1 2.8117 4.3760 0.6383 39 1 2.8469 2.9334 1.6909 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190742552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:53 Heat of formation + Delta-G solvation = -160.252166 kcal Electronic energy + Delta-G solvation = -21761.343800 eV Core-core repulsion = 18474.546491 eV Total energy + Delta-G solvation = -3286.797308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97975 -40.49257 -38.84255 -37.31527 -35.93758 -33.30891 -33.12736 -30.38408 -29.44837 -28.41981 -26.89320 -25.65635 -22.26360 -21.77618 -21.07089 -20.10940 -19.31282 -18.50860 -17.64085 -17.54589 -17.17340 -16.54675 -16.40605 -16.01739 -15.68070 -15.49769 -14.63471 -14.45261 -14.28656 -14.04182 -13.77517 -13.48019 -13.09477 -12.98093 -12.77236 -12.69693 -12.41587 -12.13863 -12.05423 -11.90540 -11.84574 -11.68765 -11.62417 -11.45984 -11.31125 -11.25833 -11.09299 -10.08395 -9.97433 -8.45906 -5.94662 1.21150 1.37676 1.40512 1.53752 1.85219 2.07445 2.29659 3.21122 3.23501 3.60852 3.71800 3.85622 4.07725 4.26713 4.29749 4.32330 4.38870 4.46637 4.53720 4.61354 4.67207 4.70279 4.73630 4.85041 4.89544 5.02959 5.11523 5.22762 5.23197 5.31032 5.40750 5.47372 5.50430 5.57473 5.66661 6.01600 6.59005 6.77942 7.12557 7.57493 8.11321 8.71952 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.006131 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.557899 B = 4566.218822 C = 5564.990697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.461 3.539 4 O -0.522 6.522 5 C -0.112 4.112 6 C -0.022 4.022 7 C -0.120 4.120 8 C 0.442 3.558 9 O -0.608 6.608 10 N -0.579 5.579 11 C -0.330 4.330 12 H 0.085 0.915 13 C -0.018 4.018 14 N -0.925 5.925 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.269 1.269 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.100 4.100 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.391 0.609 31 H 0.276 0.724 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -0.870 15.256 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.290 6.290 3 C 0.305 3.695 4 O -0.411 6.411 5 C -0.149 4.149 6 C -0.022 4.022 7 C -0.160 4.160 8 C 0.231 3.769 9 O -0.495 6.495 10 N -0.215 5.215 11 C -0.460 4.460 12 H 0.103 0.897 13 C -0.217 4.217 14 N -0.567 5.567 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.194 1.194 19 C -0.143 4.143 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.137 4.137 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.224 0.776 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.387 -1.088 15.225 15.327 hybrid contribution -0.539 0.012 -1.339 1.444 sum -1.927 -1.076 13.886 14.060 Atomic orbital electron populations 1.23500 0.75135 1.05479 1.02360 1.86517 1.24928 1.33586 1.83936 1.24218 0.92855 0.81145 0.71239 1.90587 1.67766 1.36475 1.46296 1.21834 0.86233 1.00129 1.06711 1.20685 0.96304 0.91948 0.93298 1.21765 1.01505 0.99937 0.92791 1.20827 0.85159 0.86810 0.84145 1.90414 1.37850 1.37200 1.84073 1.42077 1.39490 1.34403 1.05504 1.19734 1.23157 1.16755 0.86331 0.89707 1.26095 0.96930 0.98049 1.00609 1.69699 1.32343 1.32444 1.22179 0.84912 0.78573 0.77842 0.76933 1.19725 1.19765 1.19395 1.22418 0.93025 0.98386 1.00519 1.22549 0.99301 0.96738 0.97493 1.22384 0.94015 1.01404 0.97665 1.22166 0.97561 0.98755 0.95243 0.91059 0.93049 0.85317 0.85455 0.87862 0.89836 0.89114 0.77591 0.91445 0.90928 0.92884 0.92269 0.90204 0.90607 0.90421 0.92051 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.37 -11.31 10.57 -51.41 -0.54 -11.86 16 3 C 0.46 15.12 7.07 71.23 0.50 15.62 16 4 O -0.52 -18.29 12.21 21.94 0.27 -18.02 16 5 C -0.11 -3.54 4.37 29.85 0.13 -3.41 16 6 C -0.02 -0.68 0.33 -51.46 -0.02 -0.70 16 7 C -0.12 -4.51 4.26 29.85 0.13 -4.39 16 8 C 0.44 21.06 6.91 87.66 0.61 21.66 16 9 O -0.61 -31.10 11.58 -3.07 -0.04 -31.14 16 10 N -0.58 -30.68 5.29 -307.00 -1.62 -32.30 16 11 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 12 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 13 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 14 N -0.93 -51.59 13.05 21.66 0.28 -51.31 16 15 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.11 -3.21 5.14 31.70 0.16 -3.05 16 20 C -0.12 -2.91 6.91 31.92 0.22 -2.69 16 21 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 22 C -0.10 -2.59 4.66 31.32 0.15 -2.44 16 23 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 24 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.13 3.16 8.11 -2.39 -0.02 3.14 16 27 H 0.10 3.97 5.74 -2.39 -0.01 3.96 16 28 H 0.08 3.27 5.95 -2.39 -0.01 3.25 16 29 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.39 20.47 7.90 -92.71 -0.73 19.73 16 31 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.07 2.02 7.83 -2.39 -0.02 2.00 16 33 H 0.05 2.01 5.96 -2.38 -0.01 2.00 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.69 7.67 -2.39 -0.02 1.67 16 39 H 0.06 1.58 6.74 -2.39 -0.02 1.56 16 Total: -1.00 -65.63 312.25 5.28 -60.36 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.33 Total: 37.12 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.57 Total: 1.62 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.34 Total: -83.61 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -0.31 Total: -61.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.63 5.28 -60.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190742552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.896 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds