Wall clock time and date at job start Mon Mar 30 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47198 * 2 1 4 4 C 1.50702 * 109.47454 * 240.00033 * 2 1 3 5 5 H 1.08002 * 120.00228 * 239.99993 * 4 2 1 6 6 C 1.37875 * 119.99612 * 60.00211 * 4 2 1 7 7 N 1.31507 * 120.00443 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99605 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47579 * 89.99820 * 8 6 4 10 10 H 1.48509 * 109.46851 * 209.99811 * 8 6 4 11 11 H 1.48494 * 109.47230 * 329.99267 * 8 6 4 12 12 N 1.46497 * 109.47102 * 120.00166 * 2 1 3 13 13 C 1.46501 * 120.00272 * 60.00192 * 12 2 1 14 14 C 1.34786 * 120.00062 * 240.00137 * 12 2 1 15 15 O 1.21281 * 119.99658 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00130 * 179.97438 * 14 12 2 17 17 H 1.09007 * 115.55912 * 34.29723 * 16 14 12 18 18 C 1.52999 * 117.50033 * 248.61273 * 16 14 12 19 19 H 1.08994 * 117.49813 * 0.02562 * 18 16 14 20 20 C 1.50695 * 117.50081 * 145.02221 * 18 16 14 21 21 O 1.20831 * 120.00103 * 332.63435 * 20 18 16 22 22 O 1.34235 * 120.00278 * 152.63506 * 20 18 16 23 23 C 1.53002 * 60.03006 * 252.51924 * 18 16 14 24 24 C 1.53001 * 117.49974 * 107.47734 * 23 18 16 25 25 C 1.52995 * 117.49968 * 252.47468 * 23 18 16 26 26 H 1.08996 * 109.47003 * 299.99942 * 1 2 3 27 27 H 1.09001 * 109.46630 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00725 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47176 * 269.99998 * 13 12 2 31 31 H 1.08993 * 109.46900 * 29.99931 * 13 12 2 32 32 H 1.08998 * 109.47446 * 150.00107 * 13 12 2 33 33 H 0.96691 * 116.99998 * 179.97438 * 22 20 18 34 34 H 1.09000 * 109.47473 * 111.39263 * 24 23 18 35 35 H 1.09003 * 109.47157 * 231.39645 * 24 23 18 36 36 H 1.08999 * 109.46804 * 351.38785 * 24 23 18 37 37 H 1.09000 * 109.47164 * 54.77734 * 25 23 18 38 38 H 1.09009 * 109.47418 * 174.77548 * 25 23 18 39 39 H 1.09000 * 109.47522 * 294.77331 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1616 -4.4119 10 1 2.4868 -0.1412 -5.1122 11 1 3.6295 -1.7581 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2950 -0.7459 3.3141 17 1 3.5210 -1.8046 3.1868 18 6 2.7319 -0.3012 4.6654 19 1 1.9981 0.5047 4.6642 20 6 2.5322 -1.3604 5.7186 21 8 2.3269 -2.5056 5.3924 22 8 2.5823 -1.0318 7.0191 23 6 4.1705 0.0525 4.2832 24 6 4.4690 1.5105 3.9281 25 6 5.2962 -0.6958 4.9998 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7083 1.1610 -3.4843 30 1 0.7376 -2.1445 1.9993 31 1 1.5296 -2.5968 0.4708 32 1 2.4629 -2.5819 1.9863 33 1 2.4479 -1.7453 7.6577 34 1 5.0981 1.9514 4.7014 35 1 4.9876 1.5523 2.9702 36 1 3.5340 2.0664 3.8595 37 1 5.1491 -1.7697 4.8852 38 1 6.2551 -0.4120 4.5658 39 1 5.2867 -0.4388 6.0591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223544635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:17 Heat of formation + Delta-G solvation = -102.064872 kcal Electronic energy + Delta-G solvation = -21501.920602 eV Core-core repulsion = 18217.646484 eV Total energy + Delta-G solvation = -3284.274118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88271 -39.37042 -37.19563 -36.16199 -35.16195 -32.84510 -30.04540 -29.14163 -27.49679 -26.15786 -25.63665 -25.19365 -22.43219 -20.46300 -19.42078 -18.43027 -17.77180 -17.09718 -16.41772 -15.90139 -15.80701 -15.14816 -14.41198 -14.32747 -13.82060 -13.62041 -13.42436 -12.95848 -12.60725 -12.45427 -12.37776 -12.22171 -11.92653 -11.70722 -11.60606 -11.45063 -11.32609 -11.02610 -10.83563 -10.75995 -10.64303 -10.27847 -10.22072 -10.16420 -9.79929 -9.17619 -8.80860 -8.42106 -7.58040 -6.07295 -4.15219 2.02007 2.60254 3.16154 3.26875 3.33985 3.37238 3.76237 3.90771 4.39032 4.54342 4.63516 4.83856 5.03283 5.18500 5.23978 5.32696 5.50789 5.56976 5.76201 5.82923 5.93000 5.99174 6.10688 6.14180 6.26177 6.31650 6.44700 6.68006 6.76127 6.84308 7.06743 7.42197 7.52980 7.71763 7.76610 8.01327 8.19637 8.52247 8.82429 9.03794 9.51260 10.97976 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.004902 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.713719 B = 5710.282048 C = 5945.568959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.084 3.916 14 C 0.532 3.468 15 O -0.543 6.543 16 C -0.146 4.146 17 H 0.131 0.869 18 C -0.143 4.143 19 H 0.144 0.856 20 C 0.515 3.485 21 O -0.510 6.510 22 O -0.511 6.511 23 C -0.065 4.065 24 C -0.102 4.102 25 C -0.124 4.124 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.408 0.592 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -3.813 16.179 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.060 4.060 14 C 0.318 3.682 15 O -0.422 6.422 16 C -0.167 4.167 17 H 0.148 0.852 18 C -0.162 4.162 19 H 0.161 0.839 20 C 0.357 3.643 21 O -0.398 6.398 22 O -0.322 6.322 23 C -0.066 4.066 24 C -0.159 4.159 25 C -0.181 4.181 26 H 0.029 0.971 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.228 -3.089 15.508 16.368 hybrid contribution -0.083 -1.269 -0.456 1.351 sum 4.145 -4.358 15.052 16.209 Atomic orbital electron populations 1.22082 0.98149 0.99466 1.00752 1.18970 0.90898 0.94529 0.79834 0.91781 1.21319 1.31834 1.13012 0.90279 0.92221 1.24884 0.94941 0.94956 0.98951 1.69873 1.36353 1.22605 1.23761 0.86492 0.79200 0.79300 0.82386 1.20620 1.21100 1.19928 1.48219 1.48113 1.11813 1.23294 1.21637 0.99141 0.83086 1.02170 1.19228 0.79297 0.86468 0.83196 1.90654 1.58218 1.16613 1.76717 1.22773 1.03245 1.01522 0.89136 0.85176 1.21926 1.01751 0.99978 0.92541 0.83887 1.22335 0.71670 0.88166 0.82115 1.90729 1.44800 1.21817 1.82431 1.84545 1.84173 1.46035 1.17464 1.21721 0.88714 0.98133 0.97991 1.21379 1.02789 0.90526 1.01226 1.21486 0.97361 0.99232 1.00034 0.97058 0.88815 0.95136 0.92685 0.93790 0.90147 0.92572 0.73327 0.93243 0.90382 0.91103 0.92397 0.90814 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.58 2.64 -69.08 -0.18 6.40 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.20 7.99 -34.44 -0.28 -14.48 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.21 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.58 -12.62 2.75 -175.27 -0.48 -13.10 16 13 C 0.08 1.50 9.26 59.85 0.55 2.06 16 14 C 0.53 10.85 7.44 -10.98 -0.08 10.77 16 15 O -0.54 -12.48 12.43 5.56 0.07 -12.41 16 16 C -0.15 -2.29 4.45 -91.74 -0.41 -2.70 16 17 H 0.13 1.97 6.17 -51.92 -0.32 1.65 16 18 C -0.14 -1.94 5.63 -91.77 -0.52 -2.46 16 19 H 0.14 1.93 8.05 -51.93 -0.42 1.51 16 20 C 0.51 6.45 6.94 36.00 0.25 6.70 16 21 O -0.51 -7.65 17.36 -18.75 -0.33 -7.98 16 22 O -0.51 -4.74 13.42 -39.27 -0.53 -5.27 16 23 C -0.06 -0.86 2.70 -154.47 -0.42 -1.28 16 24 C -0.10 -1.43 8.08 37.16 0.30 -1.13 16 25 C -0.12 -1.32 8.85 37.15 0.33 -0.99 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 32 H 0.06 0.88 6.00 -51.93 -0.31 0.57 16 33 H 0.41 1.91 9.10 45.56 0.41 2.32 16 34 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 1.25 7.26 -51.93 -0.38 0.87 16 36 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 37 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 38 H 0.07 0.72 8.13 -51.92 -0.42 0.30 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -31.72 321.75 -5.87 -37.59 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.85 Total: 3.37 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.21 Total: 1.36 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.14 Total: -37.53 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.78 Total: -25.66 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.72 -5.87 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.473 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds