Wall clock time and date at job start Mon Mar 30 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47198 * 2 1 4 4 C 1.50702 * 109.47454 * 240.00033 * 2 1 3 5 5 H 1.08002 * 120.00228 * 239.99993 * 4 2 1 6 6 C 1.37875 * 119.99612 * 60.00211 * 4 2 1 7 7 N 1.31507 * 120.00443 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99605 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47579 * 89.99820 * 8 6 4 10 10 H 1.48509 * 109.46851 * 209.99811 * 8 6 4 11 11 H 1.48494 * 109.47230 * 329.99267 * 8 6 4 12 12 N 1.46497 * 109.47102 * 120.00166 * 2 1 3 13 13 C 1.46501 * 120.00272 * 60.00192 * 12 2 1 14 14 C 1.34786 * 120.00062 * 240.00137 * 12 2 1 15 15 O 1.21281 * 119.99658 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00130 * 179.97438 * 14 12 2 17 17 H 1.09007 * 115.55912 * 34.29723 * 16 14 12 18 18 C 1.52999 * 117.50033 * 248.61273 * 16 14 12 19 19 H 1.08994 * 117.49813 * 0.02562 * 18 16 14 20 20 C 1.50695 * 117.50081 * 145.02221 * 18 16 14 21 21 O 1.20831 * 120.00103 * 332.63435 * 20 18 16 22 22 O 1.34235 * 120.00278 * 152.63506 * 20 18 16 23 23 C 1.53002 * 60.03006 * 252.51924 * 18 16 14 24 24 C 1.53001 * 117.49974 * 107.47734 * 23 18 16 25 25 C 1.52995 * 117.49968 * 252.47468 * 23 18 16 26 26 H 1.08996 * 109.47003 * 299.99942 * 1 2 3 27 27 H 1.09001 * 109.46630 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00725 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47176 * 269.99998 * 13 12 2 31 31 H 1.08993 * 109.46900 * 29.99931 * 13 12 2 32 32 H 1.08998 * 109.47446 * 150.00107 * 13 12 2 33 33 H 0.96691 * 116.99998 * 179.97438 * 22 20 18 34 34 H 1.09000 * 109.47473 * 111.39263 * 24 23 18 35 35 H 1.09003 * 109.47157 * 231.39645 * 24 23 18 36 36 H 1.08999 * 109.46804 * 351.38785 * 24 23 18 37 37 H 1.09000 * 109.47164 * 54.77734 * 25 23 18 38 38 H 1.09009 * 109.47418 * 174.77548 * 25 23 18 39 39 H 1.09000 * 109.47522 * 294.77331 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1616 -4.4119 10 1 2.4868 -0.1412 -5.1122 11 1 3.6295 -1.7581 -3.7122 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2950 -0.7459 3.3141 17 1 3.5210 -1.8046 3.1868 18 6 2.7319 -0.3012 4.6654 19 1 1.9981 0.5047 4.6642 20 6 2.5322 -1.3604 5.7186 21 8 2.3269 -2.5056 5.3924 22 8 2.5823 -1.0318 7.0191 23 6 4.1705 0.0525 4.2832 24 6 4.4690 1.5105 3.9281 25 6 5.2962 -0.6958 4.9998 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7083 1.1610 -3.4843 30 1 0.7376 -2.1445 1.9993 31 1 1.5296 -2.5968 0.4708 32 1 2.4629 -2.5819 1.9863 33 1 2.4479 -1.7453 7.6577 34 1 5.0981 1.9514 4.7014 35 1 4.9876 1.5523 2.9702 36 1 3.5340 2.0664 3.8595 37 1 5.1491 -1.7697 4.8852 38 1 6.2551 -0.4120 4.5658 39 1 5.2867 -0.4388 6.0591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223544635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:17 Heat of formation + Delta-G solvation = -122.596273 kcal Electronic energy + Delta-G solvation = -21502.810910 eV Core-core repulsion = 18217.646484 eV Total energy + Delta-G solvation = -3285.164426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00745 -40.69156 -38.52429 -37.12254 -36.84839 -34.80306 -31.69888 -30.48752 -28.49369 -27.64903 -27.32722 -26.88213 -23.85664 -21.93507 -20.59163 -19.72319 -18.94609 -18.50660 -18.26082 -17.37300 -16.91864 -16.74410 -16.01596 -15.93288 -14.99740 -14.85862 -14.55090 -14.46470 -14.11664 -13.83749 -13.67938 -13.51659 -13.36887 -13.09886 -13.05919 -12.76797 -12.72418 -12.59397 -12.57238 -12.39051 -12.20743 -12.10588 -11.75783 -11.38959 -11.18942 -10.95882 -10.57226 -10.33765 -9.33781 -8.14881 -6.31268 1.04508 1.38193 1.42181 1.42860 1.52841 1.98556 2.34233 2.44412 2.58872 3.13058 3.38144 3.51380 3.61409 3.93450 4.03088 4.35881 4.41069 4.55458 4.64244 4.71061 4.75089 4.79800 4.88539 4.92777 4.98884 5.00758 5.04317 5.07530 5.25043 5.45355 5.52599 5.54306 5.58446 5.67127 6.02163 6.15867 6.75897 6.79791 6.98033 7.30130 7.46342 8.89463 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.004902 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.713719 B = 5710.282048 C = 5945.568959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.524 3.476 15 O -0.579 6.579 16 C -0.159 4.159 17 H 0.140 0.860 18 C -0.134 4.134 19 H 0.141 0.859 20 C 0.528 3.472 21 O -0.535 6.535 22 O -0.499 6.499 23 C -0.052 4.052 24 C -0.099 4.099 25 C -0.120 4.120 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.265 0.735 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.432 0.568 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -5.436 17.933 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.325 5.325 13 C -0.057 4.057 14 C 0.313 3.687 15 O -0.460 6.460 16 C -0.180 4.180 17 H 0.158 0.842 18 C -0.154 4.154 19 H 0.158 0.842 20 C 0.371 3.629 21 O -0.425 6.425 22 O -0.313 6.313 23 C -0.053 4.053 24 C -0.156 4.156 25 C -0.177 4.177 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.294 0.706 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.054 -4.740 17.316 18.651 hybrid contribution -0.342 -0.688 -0.911 1.192 sum 4.712 -5.428 16.405 17.911 Atomic orbital electron populations 1.21871 0.97278 0.99929 0.99947 1.18564 0.91514 0.92417 0.81449 0.96660 1.21565 1.31962 1.13071 0.91186 0.92252 1.25711 0.95049 0.95608 1.01939 1.70010 1.37244 1.23835 1.24451 0.85458 0.78811 0.78258 0.78494 1.19403 1.21005 1.19597 1.48215 1.48601 1.13202 1.22524 1.21761 1.00760 0.81004 1.02217 1.20000 0.78324 0.86250 0.84147 1.90635 1.59258 1.18404 1.77711 1.22560 1.05829 1.01698 0.87923 0.84221 1.21900 1.01975 0.99956 0.91545 0.84172 1.21882 0.71100 0.87045 0.82840 1.90733 1.46175 1.22594 1.83039 1.84477 1.83333 1.47068 1.16377 1.21878 0.89604 0.97455 0.96368 1.21294 1.02001 0.91285 1.01002 1.21524 0.96394 0.98862 1.00883 0.96165 0.91232 0.93847 0.92603 0.92413 0.91074 0.90051 0.70557 0.90055 0.92946 0.93217 0.92210 0.89825 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.97 71.98 0.65 -5.86 16 2 C 0.26 13.86 2.64 44.25 0.12 13.97 16 3 H 0.02 0.96 6.90 -2.39 -0.02 0.94 16 4 C -0.54 -29.69 7.99 25.60 0.20 -29.49 16 5 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 6 C 0.02 0.92 5.30 84.66 0.45 1.36 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.60 -26.12 2.75 -826.80 -2.28 -28.39 16 13 C 0.09 2.99 9.26 127.77 1.18 4.18 16 14 C 0.52 21.81 7.44 87.66 0.65 22.46 16 15 O -0.58 -27.87 12.43 -3.03 -0.04 -27.91 16 16 C -0.16 -4.87 4.45 -11.52 -0.05 -4.92 16 17 H 0.14 3.99 6.17 -2.38 -0.01 3.97 16 18 C -0.13 -3.42 5.63 -11.54 -0.07 -3.48 16 19 H 0.14 3.66 8.05 -2.39 -0.02 3.64 16 20 C 0.53 11.70 6.94 71.23 0.49 12.20 16 21 O -0.54 -14.61 17.36 21.95 0.38 -14.22 16 22 O -0.50 -7.37 13.42 -51.46 -0.69 -8.06 16 23 C -0.05 -1.30 2.70 -52.16 -0.14 -1.44 16 24 C -0.10 -2.71 8.08 71.98 0.58 -2.13 16 25 C -0.12 -2.16 8.85 71.98 0.64 -1.52 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.04 1.97 7.67 -2.38 -0.02 1.95 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.62 7.02 -2.39 -0.02 2.60 16 32 H 0.08 2.42 6.00 -2.39 -0.01 2.41 16 33 H 0.43 2.25 9.10 -74.06 -0.67 1.57 16 34 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.05 1.71 7.26 -2.39 -0.02 1.69 16 36 H 0.05 1.56 7.01 -2.39 -0.02 1.54 16 37 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 38 H 0.08 1.36 8.13 -2.38 -0.02 1.34 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.40 321.75 4.74 -65.66 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.39 Total: 14.98 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.71 Total: 5.33 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.03 Total: -81.17 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.35 Total: -50.19 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.40 4.74 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223544635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.938 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds